FFCP PHASE1:Mm9::chr4:40650187..40650220,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=66408|HGNC=|MCL_coexpression_id=0|UniProt=Q7TQC5,E0CXB7,B1AXX6,B1AXX7|association_with_transcript=0bp_to_ENSMUST00000108103,ENSMUST00000129021,NM_001025444,uc008shp.1,uc008shq.1,uc008shr.1_5end|description=CAGE_peak_1_at_Aptx_5end|id=chr4:40650187..40650220,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000153!1.63e-13!94;UBERON:0007811!1.93e-12!86;UBERON:0000033!4.57e-11!63;UBERON:0003056!3.82e-08!49;UBERON:0000955!2.59e-07!50;UBERON:0006238!2.59e-07!50;UBERON:0002616!7.44e-07!49|ontology_enrichment_uberon_v019_2=UBERON:0010371,1.57e-09,73;UBERON:0010314,2.97e-09,92;UBERON:0003056,3.82e-08,49;UBERON:0002346,9.23e-08,64;UBERON:0003075,9.23e-08,64;UBERON:0007284,9.23e-08,64;UBERON:0004121,5.49e-07,95;UBERON:0000924,5.49e-07,95;UBERON:0006601,5.49e-07,95;UBERON:0000955,9.64e-07,47;UBERON:0006238,9.64e-07,47|phase1_expression=9.28863313207805,4.18770489167233,4.54999239389536,4.23449895829562,3.50627010962443,5.03637815735669,4.67225281191051,9.16775596435192,3.94208422024667,4.91535505276186,9.07455231595176,8.69516533049167,8.04643430676667,8.56719943706175,3.99731714178795,4.25198061518635,0.699561878128147,7.88655413395594,8.91243818437302,5.09267582157636,22.4514285998824,6.15603897445489,4.96279599363977,4.63978026100879,4.35877634027623,4.01962374880514,4.73838195774982,3.878482188346,5.89072600314759,3.52842181663903,4.21287970245079,5.71527606113668,7.38077745101484,0,3.46621943701529,2.1610503896604,3.06254034393554,8.37063261473815,3.906676722619,15.1821885752402,15.2940186888064,10.9287277593351,10.6812277666854,4.53228544712078,4.8660926985367,2.9367480345869,0.782391344348039,2.18025156380447,1.5378032791413,4.27745777963423,2.65974201088189,1.43752564364972,7.55021727259814,6.5282592781021,7.05796978199174,7.20326420900652,6.01720223871389,2.57836046138721,6.06949382578793,7.40587370980846,3.1691570175309,1.0165335962074,0.889294796111139,1.3498495759221,0.988866362566974,2.8419204597844,0.898800331555214,0.384218305321555,7.05089363697648,7.1553147315796,6.94072372459561,5.14171771926846,4.19650227808066,8.81933754347669,8.81778333367775,5.51531271966013,6.60695285996332,10.3426743849002,8.29475279583715,4.87979264601717,8.96578907303615,5.2091337055676,9.21303896704557,6.19038871034848,8.55670187550137,6.18720029494702,8.25755748634797,7.26957838718672,7.1182621733193,5.06329452715463,9.56552812715537,3.44169550792555,0,2.15881276655127,1.94932925234301,0.896053774194671,6.74133216632409,6.64678258054425,3.11743205523443,2.47337702157238,7.60554466794075,6.41632387071589,5.09610479413291,0,5.19578498426914,6.58735650235256,4.04419556011827,6.96521666286266,9.32176381129818,5.64080128446334,4.16364784238726,7.00270600117925,4.38169444786511,6.33035090321015,7.52567725668511,5.40366342717605,4.20231445148436,5.35017620603673,1.76922110389975,5.66183974815932,4.19598885074748,8.24287930329878,5.59175283654366,11.4184510834503,13.4045892360611,6.38642638021478,6.35020159881377,10.7982491578813,8.51370521389534,10.6351353977424,12.3525162761029,11.0575829859321,14.2535942557667,10.9957646652042,9.97382613885888,9.89671704713322,7.33243419722277,5.72272064806428,9.60346482047964,7.57590681191306,6.50602214813519,11.9549094305406,9.36323074987816,8.13806016312861,8.98081788797528,9.48041530107888,8.99536555773397,10.3481348295606,7.32931175971664,11.1572587299013,7.38994721488585,6.79506770525482,5.00485048606076,6.96504333044333,8.23128545631774,5.37392520409932,11.2354109970118,9.77922047035918,5.68326998791185,6.00664740352955,7.73935997937617,8.4629168886677,8.28606574548236,8.65762619688577,10.3358965634543,10.4640275137684,8.04820204198858,10.0418194435766,6.25327429671226,8.70087559619205,6.08016071593918,7.30999937126662,6.14740322814942,7.64976586934119,8.41159794256509,8.95270127699774,6.27795687669216,3.96675849995316,6.18535926552179,5.80591679651096,5.92790322081629,5.44545516483025,3.33567065767305,5.32631753115166,5.21981967698963,5.43506550589236,8.54539709920916,4.17808591286417,5.65395852645448,1.79763881730844,5.61958929674205,7.96565093017469,7.2073802362171,8.91138398355885,5.63538678365402,5.90588850751411,4.84881217919064,7.50453272826409,6.13394410105296,4.57591458736767,5.80895293013087,6.04646103216823,4.15033677922008,5.33904338291501,3.14494392181125,5.17182858485164,3.04290182082754,2.41177159752417,3.05551022137704,5.17853047411459,5.83686816390127,4.11842119782122,2.87536413054709,7.44281895337007,5.61667811606209,3.03094653536534,4.12614051100398,1.92977408545347,9.23765950833023,10.6115190591471,6.19266910479698,6.62005834523234,7.04070744865506,6.365237782789,9.04565835366852,6.43941037930736,8.19702749352193,7.0868700687608,6.218735977642,6.882259218061,7.59813920209941,5.06271705035291,10.5553898757491,2.71952841909355,7.86822836830458,4.69092468718045,12.6834966090356,11.9555920324047,2.13115428989678,5.80683132570058,5.363639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| ||
|EntrezGene=66408 | |||
|HGNC= | |||
|MCL_coexpression_id=0 | |||
|UniProt=Q7TQC5,E0CXB7,B1AXX6,B1AXX7 | |||
|association_with_transcript=0bp_to_ENSMUST00000108103,ENSMUST00000129021,NM_001025444,uc008shp.1,uc008shq.1,uc008shr.1_5end | |||
|description=CAGE_peak_1_at_Aptx_5end | |||
|id=chr4:40650187..40650220,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000153!1.63e-13!94;UBERON:0007811!1.93e-12!86;UBERON:0000033!4.57e-11!63;UBERON:0003056!3.82e-08!49;UBERON:0000955!2.59e-07!50;UBERON:0006238!2.59e-07!50;UBERON:0002616!7.44e-07!49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010371,1.57e-09,73;UBERON:0010314,2.97e-09,92;UBERON:0003056,3.82e-08,49;UBERON:0002346,9.23e-08,64;UBERON:0003075,9.23e-08,64;UBERON:0007284,9.23e-08,64;UBERON:0004121,5.49e-07,95;UBERON:0000924,5.49e-07,95;UBERON:0006601,5.49e-07,95;UBERON:0000955,9.64e-07,47;UBERON:0006238,9.64e-07,47 | |||
|phase1_expression=9.28863313207805,4.18770489167233,4.54999239389536,4.23449895829562,3.50627010962443,5.03637815735669,4.67225281191051,9.16775596435192,3.94208422024667,4.91535505276186,9.07455231595176,8.69516533049167,8.04643430676667,8.56719943706175,3.99731714178795,4.25198061518635,0.699561878128147,7.88655413395594,8.91243818437302,5.09267582157636,22.4514285998824,6.15603897445489,4.96279599363977,4.63978026100879,4.35877634027623,4.01962374880514,4.73838195774982,3.878482188346,5.89072600314759,3.52842181663903,4.21287970245079,5.71527606113668,7.38077745101484,0,3.46621943701529,2.1610503896604,3.06254034393554,8.37063261473815,3.906676722619,15.1821885752402,15.2940186888064,10.9287277593351,10.6812277666854,4.53228544712078,4.8660926985367,2.9367480345869,0.782391344348039,2.18025156380447,1.5378032791413,4.27745777963423,2.65974201088189,1.43752564364972,7.55021727259814,6.5282592781021,7.05796978199174,7.20326420900652,6.01720223871389,2.57836046138721,6.06949382578793,7.40587370980846,3.1691570175309,1.0165335962074,0.889294796111139,1.3498495759221,0.988866362566974,2.8419204597844,0.898800331555214,0.384218305321555,7.05089363697648,7.1553147315796,6.94072372459561,5.14171771926846,4.19650227808066,8.81933754347669,8.81778333367775,5.51531271966013,6.60695285996332,10.3426743849002,8.29475279583715,4.87979264601717,8.96578907303615,5.2091337055676,9.21303896704557,6.19038871034848,8.55670187550137,6.18720029494702,8.25755748634797,7.26957838718672,7.1182621733193,5.06329452715463,9.56552812715537,3.44169550792555,0,2.15881276655127,1.94932925234301,0.896053774194671,6.74133216632409,6.64678258054425,3.11743205523443,2.47337702157238,7.60554466794075,6.41632387071589,5.09610479413291,0,5.19578498426914,6.58735650235256,4.04419556011827,6.96521666286266,9.32176381129818,5.64080128446334,4.16364784238726,7.00270600117925,4.38169444786511,6.33035090321015,7.52567725668511,5.40366342717605,4.20231445148436,5.35017620603673,1.76922110389975,5.66183974815932,4.19598885074748,8.24287930329878,5.59175283654366,11.4184510834503,13.4045892360611,6.38642638021478,6.35020159881377,10.7982491578813,8.51370521389534,10.6351353977424,12.3525162761029,11.0575829859321,14.2535942557667,10.9957646652042,9.97382613885888,9.89671704713322,7.33243419722277,5.72272064806428,9.60346482047964,7.57590681191306,6.50602214813519,11.9549094305406,9.36323074987816,8.13806016312861,8.98081788797528,9.48041530107888,8.99536555773397,10.3481348295606,7.32931175971664,11.1572587299013,7.38994721488585,6.79506770525482,5.00485048606076,6.96504333044333,8.23128545631774,5.37392520409932,11.2354109970118,9.77922047035918,5.68326998791185,6.00664740352955,7.73935997937617,8.4629168886677,8.28606574548236,8.65762619688577,10.3358965634543,10.4640275137684,8.04820204198858,10.0418194435766,6.25327429671226,8.70087559619205,6.08016071593918,7.30999937126662,6.14740322814942,7.64976586934119,8.41159794256509,8.95270127699774,6.27795687669216,3.96675849995316,6.18535926552179,5.80591679651096,5.92790322081629,5.44545516483025,3.33567065767305,5.32631753115166,5.21981967698963,5.43506550589236,8.54539709920916,4.17808591286417,5.65395852645448,1.79763881730844,5.61958929674205,7.96565093017469,7.2073802362171,8.91138398355885,5.63538678365402,5.90588850751411,4.84881217919064,7.50453272826409,6.13394410105296,4.57591458736767,5.80895293013087,6.04646103216823,4.15033677922008,5.33904338291501,3.14494392181125,5.17182858485164,3.04290182082754,2.41177159752417,3.05551022137704,5.17853047411459,5.83686816390127,4.11842119782122,2.87536413054709,7.44281895337007,5.61667811606209,3.03094653536534,4.12614051100398,1.92977408545347,9.23765950833023,10.6115190591471,6.19266910479698,6.62005834523234,7.04070744865506,6.365237782789,9.04565835366852,6.43941037930736,8.19702749352193,7.0868700687608,6.218735977642,6.882259218061,7.59813920209941,5.06271705035291,10.5553898757491,2.71952841909355,7.86822836830458,4.69092468718045,12.6834966090356,11.9555920324047,2.13115428989678,5.80683132570058,5.36363973007636,4.29482618726302,6.46270193198397,4.54040716109849,5.79276552614225,6.51076020814315,4.85772842009873,5.55286130031493,6.7198922250909,13.1741739732941,6.52924391958036,6.94455854302295,6.18970445543589,5.77395430403874,3.98235415019888,4.12727081463468,6.04647113929502,3.20628635585027,5.02013217897314,5.84126781093462,5.16856586336442,4.72593848320757,3.92147116223193,5.37262488490887,2.10837217149998,4.12542172992747,8.17055053809091,9.54323798365944,6.07985813778946,6.64444808597936,5.49754724291048,7.31312152168489,8.72109809191241,5.48036908406279,5.86679270159276,6.77862626764225,5.51320995137405,9.23363016472288,9.68786560175433,8.56443533979813,7.63983001620073,10.833299383174,4.95517422270746,13.5360470467672,3.75915937755276,4.12773735926445,5.00025223898222,4.1441060541032,4.51090951479383,2.97411625168479,8.32894306969891,7.83728133012485,8.7065983496787,5.72802370809068,6.32671987162271,7.31950081656655,7.02034715341708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| |||
|short_description=p1@Aptx | |||
}} | |||
Revision as of 04:55, 14 September 2013
| Short description: | p1@Aptx |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_Aptx_5end |
| Coexpression cluster: | MCL_coexpression_mm9:0 |
| Association with transcript: | 0bp_to_ENSMUST00000108103, ENSMUST00000129021, NM_001025444, uc008shp.1, uc008shq.1, uc008shr.1_5end |
| EntrezGene: | Aptx |
| Link to Zenbu: | ZENBU |
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CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| ecto-epithelium | 1.57e-09 | 73 |
| structure with developmental contribution from neural crest | 2.97e-09 | 92 |
| pre-chordal neural plate | 3.82e-08 | 49 |
| neurectoderm | 9.23e-08 | 64 |
| neural plate | 9.23e-08 | 64 |
| presumptive neural plate | 9.23e-08 | 64 |
| ectoderm-derived structure | 5.49e-07 | 95 |
| ectoderm | 5.49e-07 | 95 |
| presumptive ectoderm | 5.49e-07 | 95 |
| brain | 9.64e-07 | 47 |
| future brain | 9.64e-07 | 47 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
