FFCP PHASE1:Mm9::chr4:130348428..130348582,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=20970|HGNC=|MCL_coexpression_id=1801|UniProt=Q64519,B1ASF5|association_with_transcript=0bp_to_ENSMUST00000070478,NM_011520,uc008uzr.1_5end|description=CAGE_peak_1_at_Sdc3_5end|id=chr4:130348428..130348582,+|ontology_enrichment_celltype=CL:0000117!3.71e-12!23;CL:0000337!3.71e-12!23;CL:0000055!2.44e-11!50;CL:0002319!2.57e-11!43;CL:0000221!2.75e-11!44;CL:0000133!2.75e-11!44;CL:0000540!3.27e-11!33;CL:0000047!3.27e-11!33;CL:0000031!3.27e-11!33;CL:0000404!3.27e-11!33;CL:0000393!9.11e-11!39;CL:0000211!9.11e-11!39|ontology_enrichment_celltype_v019_2=CL:0000117,3.69e-12,23;CL:0000337,3.69e-12,23;CL:0002319,2.55e-11,43;CL:0000221,2.73e-11,44;CL:0000133,2.73e-11,44;CL:0000540,3.25e-11,33;CL:0000047,3.25e-11,33;CL:0000031,3.25e-11,33;CL:0000404,3.25e-11,33;CL:0000393,9.07e-11,39;CL:0000211,9.07e-11,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!2.29e-19!75;UBERON:0001016!2.29e-19!75;UBERON:0001017!2.45e-18!73;UBERON:0005743!2.45e-18!73;UBERON:0004121!3.54e-18!102;UBERON:0000924!3.54e-18!102;UBERON:0006601!3.54e-18!102;UBERON:0002346!7.98e-16!71;UBERON:0003075!7.98e-16!71;UBERON:0007284!7.98e-16!71;UBERON:0001049!8.91e-14!52;UBERON:0005068!8.91e-14!52;UBERON:0006241!8.91e-14!52;UBERON:0007135!8.91e-14!52;UBERON:0002020!4.42e-13!34;UBERON:0000955!3.78e-12!50;UBERON:0006238!3.78e-12!50;UBERON:0002616!9.81e-12!49;UBERON:0000468!1.58e-10!333;UBERON:0000033!2.13e-10!63;UBERON:0000025!2.24e-10!114;UBERON:0002791!4.45e-10!29;UBERON:0003528!4.45e-10!29;UBERON:0001893!4.45e-10!29;UBERON:0004111!1.87e-09!122;UBERON:0003080!4.85e-09!40;UBERON:0002780!1.22e-08!39;UBERON:0001890!1.22e-08!39;UBERON:0006240!1.22e-08!39;UBERON:0003056!5.35e-08!49;UBERON:0000479!1.94e-07!349;UBERON:0000922!3.18e-07!328|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.27e-19,75;UBERON:0001017,2.43e-18,73;UBERON:0010314,3.40e-15,92;UBERON:0000073,1.25e-14,54;UBERON:0004121,1.34e-14,95;UBERON:0000924,1.34e-14,95;UBERON:0006601,1.34e-14,95;UBERON:0001049,8.86e-14,52;UBERON:0005068,8.86e-14,52;UBERON:0006241,8.86e-14,52;UBERON:0007135,8.86e-14,52;UBERON:0002020,4.40e-13,34;UBERON:0002346,2.49e-12,64;UBERON:0003075,2.49e-12,64;UBERON:0007284,2.49e-12,64;UBERON:0000955,7.61e-11,47;UBERON:0006238,7.61e-11,47;UBERON:0002616,1.92e-10,46;UBERON:0000025,2.24e-10,114;UBERON:0003528,4.43e-10,29;UBERON:0002791,4.43e-10,29;UBERON:0001893,4.43e-10,29;UBERON:0010371,7.63e-10,73;UBERON:0004111,1.86e-09,122;UBERON:0003080,4.83e-09,40;UBERON:0002780,1.22e-08,39;UBERON:0001890,1.22e-08,39;UBERON:0006240,1.22e-08,39;UBERON:0003056,5.33e-08,49;UBERON:0000922,1.15e-07,320;UBERON:0000479,2.10e-07,349|phase1_expression=54.7709057098395,0,0,0.60492842261366,0,0.503637815735669,0.934450562382103,4.13194635013044,3.09735188733667,2.57470978954193,1.19852577757853,0.638177271962691,3.0816131387617,2.53519167015092,65.6226230776856,37.0529739323381,23.785103856357,18.9277299214943,21.6640805097067,24.1902101524877,54.2576191163825,5.46100231604869,4.4403964153619,2.07990149631429,1.14704640533585,0,0,0.215471232685889,0.570070258369122,0.504060259519861,0.665191531965914,0,0,0,0.288851619751275,0.166234645358492,0.204169356262369,1.67412652294763,2.3440060335714,3.66466620781659,0.588231488031014,2.04913645487534,3.39857247121808,30.3411331321141,26.4593790482933,30.2852141066775,90.7573959443725,34.665999864491,27.9001452072779,12.4435135407541,36.1164967793435,66.1261796078869,2.68452169692378,2.17608642603403,2.35265659399725,147.666916284634,115.759509735258,128.402350977083,222.750423406417,221.11822933571,200.290723507953,43.3721001048489,16.0073063300005,725.769121987448,1008.64368981831,888.100143682625,490.445380918629,416.108424663244,99.4383382038301,106.924703158699,105.793455559745,361.919797239619,297.289056120872,96.2777681829539,82.4271050756833,100.194847740492,135.442533629248,153.607867716481,145.618993526919,337.233237726106,332.832047425566,277.646826506753,154.109015448762,122.119486376875,137.060028255799,343.242302076823,319.197308351589,210.63137378259,131.915028786407,202.909638886719,58.8424912064406,86.90281157512,1.3599426674155,7.01614149129162,16.8941868536394,9.85659151614138,43.9591035012383,59.6506129023202,42.3451187502676,56.8876714961648,62.6753218006228,214.305217281911,193.651982177051,255.984013135199,14.5048997477513,18.2419103142071,11.1215377903252,38.2515997058851,271.107964178589,251.906309993008,95.2434443946086,193.944509684834,236.842115681972,222.768062736776,201.076689202055,261.512176557055,34.360100515078,62.7561209032417,118.537813961283,116.14859826224,91.8700716795237,94.0657991082331,13.0474232852686,117.697880398642,91.5282108774799,9.45191104271788,1.07833612055328,1.19980546198682,0.254140454146129,138.706132088866,107.970142265196,289.884590324378,134.887672469207,114.304809426658,152.100848617598,110.648541412211,106.931332042832,104.875076224308,30.8321765289083,43.7719060243866,34.2216764991911,29.4274693674845,58.7002543165438,46.1156742577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| ||
|EntrezGene=20970 | |||
|HGNC= | |||
|MCL_coexpression_id=1801 | |||
|UniProt=Q64519,B1ASF5 | |||
|association_with_transcript=0bp_to_ENSMUST00000070478,NM_011520,uc008uzr.1_5end | |||
|description=CAGE_peak_1_at_Sdc3_5end | |||
|id=chr4:130348428..130348582,+ | |||
|ontology_enrichment_celltype=CL:0000117!3.71e-12!23;CL:0000337!3.71e-12!23;CL:0000055!2.44e-11!50;CL:0002319!2.57e-11!43;CL:0000221!2.75e-11!44;CL:0000133!2.75e-11!44;CL:0000540!3.27e-11!33;CL:0000047!3.27e-11!33;CL:0000031!3.27e-11!33;CL:0000404!3.27e-11!33;CL:0000393!9.11e-11!39;CL:0000211!9.11e-11!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.69e-12,23;CL:0000337,3.69e-12,23;CL:0002319,2.55e-11,43;CL:0000221,2.73e-11,44;CL:0000133,2.73e-11,44;CL:0000540,3.25e-11,33;CL:0000047,3.25e-11,33;CL:0000031,3.25e-11,33;CL:0000404,3.25e-11,33;CL:0000393,9.07e-11,39;CL:0000211,9.07e-11,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.29e-19!75;UBERON:0001016!2.29e-19!75;UBERON:0001017!2.45e-18!73;UBERON:0005743!2.45e-18!73;UBERON:0004121!3.54e-18!102;UBERON:0000924!3.54e-18!102;UBERON:0006601!3.54e-18!102;UBERON:0002346!7.98e-16!71;UBERON:0003075!7.98e-16!71;UBERON:0007284!7.98e-16!71;UBERON:0001049!8.91e-14!52;UBERON:0005068!8.91e-14!52;UBERON:0006241!8.91e-14!52;UBERON:0007135!8.91e-14!52;UBERON:0002020!4.42e-13!34;UBERON:0000955!3.78e-12!50;UBERON:0006238!3.78e-12!50;UBERON:0002616!9.81e-12!49;UBERON:0000468!1.58e-10!333;UBERON:0000033!2.13e-10!63;UBERON:0000025!2.24e-10!114;UBERON:0002791!4.45e-10!29;UBERON:0003528!4.45e-10!29;UBERON:0001893!4.45e-10!29;UBERON:0004111!1.87e-09!122;UBERON:0003080!4.85e-09!40;UBERON:0002780!1.22e-08!39;UBERON:0001890!1.22e-08!39;UBERON:0006240!1.22e-08!39;UBERON:0003056!5.35e-08!49;UBERON:0000479!1.94e-07!349;UBERON:0000922!3.18e-07!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.27e-19,75;UBERON:0001017,2.43e-18,73;UBERON:0010314,3.40e-15,92;UBERON:0000073,1.25e-14,54;UBERON:0004121,1.34e-14,95;UBERON:0000924,1.34e-14,95;UBERON:0006601,1.34e-14,95;UBERON:0001049,8.86e-14,52;UBERON:0005068,8.86e-14,52;UBERON:0006241,8.86e-14,52;UBERON:0007135,8.86e-14,52;UBERON:0002020,4.40e-13,34;UBERON:0002346,2.49e-12,64;UBERON:0003075,2.49e-12,64;UBERON:0007284,2.49e-12,64;UBERON:0000955,7.61e-11,47;UBERON:0006238,7.61e-11,47;UBERON:0002616,1.92e-10,46;UBERON:0000025,2.24e-10,114;UBERON:0003528,4.43e-10,29;UBERON:0002791,4.43e-10,29;UBERON:0001893,4.43e-10,29;UBERON:0010371,7.63e-10,73;UBERON:0004111,1.86e-09,122;UBERON:0003080,4.83e-09,40;UBERON:0002780,1.22e-08,39;UBERON:0001890,1.22e-08,39;UBERON:0006240,1.22e-08,39;UBERON:0003056,5.33e-08,49;UBERON:0000922,1.15e-07,320;UBERON:0000479,2.10e-07,349 | |||
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| |||
|short_description=p1@Sdc3 | |||
}} |
Revision as of 03:55, 14 September 2013
Short description: | p1@Sdc3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Sdc3_5end |
Coexpression cluster: | MCL_coexpression_mm9:1801 |
Association with transcript: | 0bp_to_ENSMUST00000070478, NM_011520, uc008uzr.1_5end |
EntrezGene: | Sdc3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.69e-12 | 23 |
neuroblast (sensu Vertebrata) | 3.69e-12 | 23 |
neural cell | 2.55e-11 | 43 |
ectodermal cell | 2.73e-11 | 44 |
neurectodermal cell | 2.73e-11 | 44 |
neuron | 3.25e-11 | 33 |
neuronal stem cell | 3.25e-11 | 33 |
neuroblast | 3.25e-11 | 33 |
electrically signaling cell | 3.25e-11 | 33 |
electrically responsive cell | 9.07e-11 | 39 |
electrically active cell | 9.07e-11 | 39 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.27e-19 | 75 |
central nervous system | 2.43e-18 | 73 |
structure with developmental contribution from neural crest | 3.40e-15 | 92 |
regional part of nervous system | 1.25e-14 | 54 |
ectoderm-derived structure | 1.34e-14 | 95 |
ectoderm | 1.34e-14 | 95 |
presumptive ectoderm | 1.34e-14 | 95 |
neural tube | 8.86e-14 | 52 |
neural rod | 8.86e-14 | 52 |
future spinal cord | 8.86e-14 | 52 |
neural keel | 8.86e-14 | 52 |
gray matter | 4.40e-13 | 34 |
neurectoderm | 2.49e-12 | 64 |
neural plate | 2.49e-12 | 64 |
presumptive neural plate | 2.49e-12 | 64 |
brain | 7.61e-11 | 47 |
future brain | 7.61e-11 | 47 |
regional part of brain | 1.92e-10 | 46 |
tube | 2.24e-10 | 114 |
brain grey matter | 4.43e-10 | 29 |
regional part of telencephalon | 4.43e-10 | 29 |
telencephalon | 4.43e-10 | 29 |
ecto-epithelium | 7.63e-10 | 73 |
anatomical conduit | 1.86e-09 | 122 |
anterior neural tube | 4.83e-09 | 40 |
regional part of forebrain | 1.22e-08 | 39 |
forebrain | 1.22e-08 | 39 |
future forebrain | 1.22e-08 | 39 |
pre-chordal neural plate | 5.33e-08 | 49 |
embryo | 1.15e-07 | 320 |
tissue | 2.10e-07 | 349 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.