FFCP PHASE1:Mm9::chr3:95119162..95119195,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=76893|HGNC=|MCL_coexpression_id=2985|UniProt=Q924Z4|association_with_transcript=0bp_to_ENSMUST00000133748,ENSMUST00000154055,NM_029789,uc008qjj.1_5end|description=CAGE_peak_1_at_Lass2_5end|id=chr3:95119162..95119195,+|ontology_enrichment_celltype=CL:0000219!5.60e-11!54;CL:0000063!1.27e-08!66;CL:0002320!2.19e-07!46;CL:0000134!2.19e-07!46;CL:0000144!4.25e-07!121;CL:0000012!4.25e-07!121;CL:0000333!9.16e-07!10;CL:0000095!9.16e-07!10;CL:0000243!9.16e-07!10;CL:0000123!9.16e-07!10;CL:0000125!9.16e-07!10;CL:0000030!9.16e-07!10;CL:0000339!9.16e-07!10|ontology_enrichment_celltype_v019_2=CL:0000219,5.60e-11,54;CL:0002320,2.19e-07,46;CL:0000134,2.19e-07,46;CL:0000333,9.16e-07,10;CL:0000095,9.16e-07,10;CL:0000243,9.16e-07,10;CL:0000123,9.16e-07,10;CL:0000125,9.16e-07,10;CL:0000030,9.16e-07,10;CL:0000339,9.16e-07,10|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0009569!1.06e-11!66;UBERON:0002100!2.89e-10!98;UBERON:0005256!3.83e-10!47;UBERON:0002365!2.72e-08!25;UBERON:0002330!2.72e-08!25;UBERON:0005177!2.79e-08!85;UBERON:0000926!4.13e-08!193;UBERON:0004120!4.13e-08!193;UBERON:0006603!4.13e-08!193;UBERON:0005172!5.72e-08!49;UBERON:0005173!5.72e-08!49;UBERON:0002417!5.72e-08!49;UBERON:0000916!5.72e-08!49;UBERON:0002107!1.88e-07!22;UBERON:0007499!1.88e-07!22;UBERON:0006925!1.88e-07!22;UBERON:0009497!1.88e-07!22;UBERON:0000015!1.88e-07!22;UBERON:0002423!1.88e-07!22;UBERON:0006235!1.88e-07!22;UBERON:0008835!1.88e-07!22;UBERON:0003894!1.88e-07!22;UBERON:0004161!1.88e-07!22;UBERON:0008836!1.88e-07!22;UBERON:0003104!2.12e-07!131;UBERON:0009142!2.12e-07!131;UBERON:0002384!2.19e-07!46;UBERON:0002405!4.35e-07!70;UBERON:0009854!5.90e-07!23;UBERON:0009856!5.90e-07!23;UBERON:0004119!6.63e-07!130;UBERON:0000925!6.63e-07!130;UBERON:0006595!6.63e-07!130;UBERON:0002204!6.64e-07!32|ontology_enrichment_uberon_v019_2=UBERON:0002100,5.79e-12,90;UBERON:0009569,1.06e-11,66;UBERON:0005256,1.82e-10,45;UBERON:0003104,5.00e-10,61;UBERON:0009142,5.00e-10,61;UBERON:0005177,9.56e-10,79;UBERON:0002365,2.72e-08,25;UBERON:0002330,2.72e-08,25;UBERON:0005172,5.72e-08,49;UBERON:0005173,5.72e-08,49;UBERON:0002417,5.72e-08,49;UBERON:0000916,5.72e-08,49;UBERON:0004119,9.74e-08,118;UBERON:0000925,9.74e-08,118;UBERON:0006595,9.74e-08,118;UBERON:0002107,1.88e-07,22;UBERON:0007499,1.88e-07,22;UBERON:0006925,1.88e-07,22;UBERON:0009497,1.88e-07,22;UBERON:0000015,1.88e-07,22;UBERON:0002423,1.88e-07,22;UBERON:0006235,1.88e-07,22;UBERON:0008835,1.88e-07,22;UBERON:0003894,1.88e-07,22;UBERON:0004161,1.88e-07,22;UBERON:0008836,1.88e-07,22;UBERON:0002384,2.19e-07,46;UBERON:0001007,4.43e-07,116;UBERON:0001555,4.43e-07,116;UBERON:0007026,4.43e-07,116;UBERON:0009854,5.90e-07,23;UBERON:0009856,5.90e-07,23;UBERON:0002204,6.64e-07,32|phase1_expression=44.6815283422375,79.5663929417743,78.2598691750002,76.523445460628,64.1146534331324,37.4370776363514,41.5830500260036,54.8774124626699,32.8037722613384,27.3855495796732,71.9115466547121,61.9829675393764,59.064251826266,54.1132290973594,63.6239645067916,51.6311931844056,53.8662646158673,51.2626018707136,55.2571167431127,61.1121098589163,48.4746753861098,45.7731285036081,41.0083668948129,77.4363326320088,82.8167504652484,75.7986192631827,62.0297274469068,66.7960821326256,108.313349090133,75.8610690577392,84.0358635383605,39.3719017544971,38.1340168302433,15.8481681015439,27.4409038763711,31.750817263472,29.6045566580435,91.6584271313828,84.3842172085704,64.3934205087772,82.940639812373,80.5993672250966,82.051249662265,60.3045758103015,58.4944893136599,64.7920035130736,98.5813093878529,88.9542638032222,125.440810341383,139.211807737187,79.5122874832059,100.62679505548,76.8444335744433,71.8108520591231,65.8743846319229,87.468208252222,76.7909619035868,81.4761905798359,14.1621522601718,20.1016572123373,19.0149421051854,69.8019736062412,82.704416038336,170.530996424825,226.450397027837,211.012594138992,128.828047522914,106.812688879392,16.6940275816649,19.1708432431001,14.5124223332454,48.2750163642428,56.5423464836131,11.8816075238505,16.5812664861549,28.4957823849107,34.1359231098105,28.9850257453376,28.5708151856613,19.1235117208781,14.1805847583735,21.3574481928272,45.5068288372251,32.6402313818374,31.7820355375765,29.1682299618931,22.9218406086556,19.3855423658313,158.343470259688,140.563101798621,85.510024166995,129.924005424189,185.632174102216,180.800569198669,280.703412337393,235.662142613199,69.2390991249537,71.7511658053623,70.4020072473774,80.5614229883576,45.0698943285378,52.6138557398703,71.3454671178608,71.1066703153331,106.730083218529,97.0368284769628,116.776146798415,92.1463909332814,62.6629678426156,95.745179696812,46.6675529000905,53.5859241829369,66.4172632097448,69.1816920136538,62.7923696104664,93.2446107666192,81.327144384609,100.062754988579,75.1918969157393,46.9123864847487,48.805975579747,49.9421510729279,37.2783522436244,22.2513405728776,29.5319856606972,95.7963957032218,60.6264529999957,52.1915375964265,62.772692174094,28.9095934051308,27.4500361691176,10.4293112253677,12.6891753740362,19.1786592997748,32.6227229958509,37.3154905055843,41.550460450929,47.2746488318353,56.1044523722758,36.1959992124735,30.7084245391981,26.4387420098494,29.3501271582719,26.0719334855787,27.4187091579851,29.85049682637,30.1719553082327,40.8751325767645,31.2573589752621,41.6033376369202,51.729630504201,54.7989331068937,40.0388038884861,38.3077383174383,37.8639130990616,31.6464484241404,68.816892356697,61.5061498004169,64.2209508634039,38.7325194641389,35.6479611171266,34.9320399234369,41.667073462997,39.7463748129756,39.4923808991688,39.2982366628189,42.1189240197402,40.1672777743063,39.4943639792353,40.2210286993783,36.2377578669975,36.2575968814824,36.0062189077323,34.4910496214155,20.1878350621562,19.551876352064,152.323058955531,108.16028176539,27.3008960685099,28.5651106388339,35.4385518635757,40.1350214000452,47.3665233389574,55.7361084509798,81.1444695241115,64.0678933876402,55.042410727259,57.8963333639749,62.7784360523567,90.7807602740764,77.8096979548899,76.470248929677,47.0376394363643,29.1333707154809,33.8123207019241,41.3412195525988,43.6393096127158,48.7443948237714,60.8967852506598,87.3852076039245,87.4482914076458,105.627972317061,160.677323881235,49.2193061862477,48.5500717929611,47.2210436008193,52.3379113182338,54.7472152637986,50.6705445045025,66.4578077511373,74.5822043165163,77.426318519039,60.3826467414889,73.3117666906952,84.5622094140459,132.351332044287,125.75758687886,123.987984990385,109.558641768797,30.3186258832776,40.5782791340644,36.3254483558903,44.8258374231039,62.3123277683555,81.4109251830167,116.885055066821,74.4037880181221,79.0628942046126,89.1352156795353,91.5995929260975,78.2262967852507,99.51855230408,197.536581960447,243.125840666963,77.2069908639887,72.2954275318399,40.2981980869358,57.668149803364,39.1804519450254,39.1329937166778,45.433183595941,41.7769456397403,54.7175430241309,51.8562291557038,61.9380313949056,57.7476122809218,58.6975517428597,61.9582418771981,70.3612244744812,15.4234231882467,71.6797430301757,39.7086296177979,41.2104007164547,60.5440351309205,66.3725691699814,32.0470439724576,36.5811503927349,29.9882076811878,51.0872274683737,48.8821885230845,41.0900986137472,38.8981090540931,40.997198514243,52.4621018173455,39.0048851727495,43.3169281642385,46.2997863825152,30.9705081733854,40.4892680240022,34.722599675118,34.2266650929588,46.0191549413342,38.6690198414984,42.9295578251585,96.2154003061212,95.3244318887191,60.8658378631695,22.7543029059242,35.0377805930115,30.578652938575,22.5613730165928,17.5630762727216,81.9061150929881,45.8000495965959,65.9561599879711,48.5009139713573,40.1872124392274,55.3803263593792,52.0805007617106,44.8405219484784,73.2607033273516,65.9171340444429,65.3685876094925,72.5549669691486,37.9603192297362,29.4813227333931,31.8615755424314,26.3451252978231,33.6278348169114,41.1336256473703,45.6247075603854,40.0486591235565,49.9017647173403,80.1527713882134,6.76431526421028,29.9033092087958,29.1206943204492,40.4458471755619,34.098193398121,42.7458997491669,37.202244650704,41.0143812258443,29.2557570947733,21.7425708743405,19.0099804130191,44.8735791292013,33.2469353075869,28.6563570489868,32.9998890363599,34.5521522638239,38.3455014727841,33.8951167646312,33.3778331414545,34.1266600824739,33.8358221548199,38.0114717965889,39.8602732225587,39.0620077059738,37.1668548937389,28.5680283355166,93.6780723238553,73.3859347065511,94.5190390129762,51.1952424185305,76.3867675086311,58.9748230140594,37.3000979597575,88.7782624142593,20.3310663342144,14.2700823317225,20.6242384838183,18.5601436931183,13.7016503954128,15.107877947794,13.5004500046361,12.158672487054,11.3285602246051,9.31968561153276,12.7658437528537,37.907362973098,30.7320490357442,40.5988217504051,18.4459583112624,14.1559501506511,39.7821642764891,35.6440649023287,29.2036480728552,29.5655737763643,32.6988296858409,31.8778516942469,32.7745276144588,30.4119473923129,31.3597660497648,37.1509079200797,39.284786495306,34.7236596834669,29.6701848578381,29.5869829470139,38.7442255195519,34.6077822010708,27.6585980338892,29.5053225763627,29.6444548308291,32.9150824698622,31.2806833612441,34.9882716212331,30.420121501473,42.6468126459881,34.2855202378863,34.1810553843205,42.5600284896477,30.6774945548213,33.9515635326809,27.2293529952361,36.2593993090383,54.5772477282678,50.117543002037,57.7949518093131,50.083452494011|short_description=p1@Lass2}} | ||
|EntrezGene=76893 | |||
|HGNC= | |||
|MCL_coexpression_id=2985 | |||
|UniProt=Q924Z4 | |||
|association_with_transcript=0bp_to_ENSMUST00000133748,ENSMUST00000154055,NM_029789,uc008qjj.1_5end | |||
|description=CAGE_peak_1_at_Lass2_5end | |||
|id=chr3:95119162..95119195,+ | |||
|ontology_enrichment_celltype=CL:0000219!5.60e-11!54;CL:0000063!1.27e-08!66;CL:0002320!2.19e-07!46;CL:0000134!2.19e-07!46;CL:0000144!4.25e-07!121;CL:0000012!4.25e-07!121;CL:0000333!9.16e-07!10;CL:0000095!9.16e-07!10;CL:0000243!9.16e-07!10;CL:0000123!9.16e-07!10;CL:0000125!9.16e-07!10;CL:0000030!9.16e-07!10;CL:0000339!9.16e-07!10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000219,5.60e-11,54;CL:0002320,2.19e-07,46;CL:0000134,2.19e-07,46;CL:0000333,9.16e-07,10;CL:0000095,9.16e-07,10;CL:0000243,9.16e-07,10;CL:0000123,9.16e-07,10;CL:0000125,9.16e-07,10;CL:0000030,9.16e-07,10;CL:0000339,9.16e-07,10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0009569!1.06e-11!66;UBERON:0002100!2.89e-10!98;UBERON:0005256!3.83e-10!47;UBERON:0002365!2.72e-08!25;UBERON:0002330!2.72e-08!25;UBERON:0005177!2.79e-08!85;UBERON:0000926!4.13e-08!193;UBERON:0004120!4.13e-08!193;UBERON:0006603!4.13e-08!193;UBERON:0005172!5.72e-08!49;UBERON:0005173!5.72e-08!49;UBERON:0002417!5.72e-08!49;UBERON:0000916!5.72e-08!49;UBERON:0002107!1.88e-07!22;UBERON:0007499!1.88e-07!22;UBERON:0006925!1.88e-07!22;UBERON:0009497!1.88e-07!22;UBERON:0000015!1.88e-07!22;UBERON:0002423!1.88e-07!22;UBERON:0006235!1.88e-07!22;UBERON:0008835!1.88e-07!22;UBERON:0003894!1.88e-07!22;UBERON:0004161!1.88e-07!22;UBERON:0008836!1.88e-07!22;UBERON:0003104!2.12e-07!131;UBERON:0009142!2.12e-07!131;UBERON:0002384!2.19e-07!46;UBERON:0002405!4.35e-07!70;UBERON:0009854!5.90e-07!23;UBERON:0009856!5.90e-07!23;UBERON:0004119!6.63e-07!130;UBERON:0000925!6.63e-07!130;UBERON:0006595!6.63e-07!130;UBERON:0002204!6.64e-07!32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,5.79e-12,90;UBERON:0009569,1.06e-11,66;UBERON:0005256,1.82e-10,45;UBERON:0003104,5.00e-10,61;UBERON:0009142,5.00e-10,61;UBERON:0005177,9.56e-10,79;UBERON:0002365,2.72e-08,25;UBERON:0002330,2.72e-08,25;UBERON:0005172,5.72e-08,49;UBERON:0005173,5.72e-08,49;UBERON:0002417,5.72e-08,49;UBERON:0000916,5.72e-08,49;UBERON:0004119,9.74e-08,118;UBERON:0000925,9.74e-08,118;UBERON:0006595,9.74e-08,118;UBERON:0002107,1.88e-07,22;UBERON:0007499,1.88e-07,22;UBERON:0006925,1.88e-07,22;UBERON:0009497,1.88e-07,22;UBERON:0000015,1.88e-07,22;UBERON:0002423,1.88e-07,22;UBERON:0006235,1.88e-07,22;UBERON:0008835,1.88e-07,22;UBERON:0003894,1.88e-07,22;UBERON:0004161,1.88e-07,22;UBERON:0008836,1.88e-07,22;UBERON:0002384,2.19e-07,46;UBERON:0001007,4.43e-07,116;UBERON:0001555,4.43e-07,116;UBERON:0007026,4.43e-07,116;UBERON:0009854,5.90e-07,23;UBERON:0009856,5.90e-07,23;UBERON:0002204,6.64e-07,32 | |||
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| |||
|short_description=p1@Lass2 | |||
}} |
Revision as of 03:04, 14 September 2013
Short description: | p1@Lass2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Lass2_5end |
Coexpression cluster: | MCL_coexpression_mm9:2985 |
Association with transcript: | 0bp_to_ENSMUST00000133748, ENSMUST00000154055, NM_029789, uc008qjj.1_5end |
EntrezGene: | Lass2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
motile cell | 5.60e-11 | 54 |
connective tissue cell | 2.19e-07 | 46 |
mesenchymal cell | 2.19e-07 | 46 |
migratory neural crest cell | 9.16e-07 | 10 |
neuron associated cell | 9.16e-07 | 10 |
glial cell (sensu Vertebrata) | 9.16e-07 | 10 |
neuron associated cell (sensu Vertebrata) | 9.16e-07 | 10 |
glial cell | 9.16e-07 | 10 |
glioblast | 9.16e-07 | 10 |
glioblast (sensu Vertebrata) | 9.16e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
trunk | 5.79e-12 | 90 |
subdivision of trunk | 1.06e-11 | 66 |
trunk mesenchyme | 1.82e-10 | 45 |
mesenchyme | 5.00e-10 | 61 |
entire embryonic mesenchyme | 5.00e-10 | 61 |
trunk region element | 9.56e-10 | 79 |
exocrine gland | 2.72e-08 | 25 |
exocrine system | 2.72e-08 | 25 |
abdomen element | 5.72e-08 | 49 |
abdominal segment element | 5.72e-08 | 49 |
abdominal segment of trunk | 5.72e-08 | 49 |
abdomen | 5.72e-08 | 49 |
endoderm-derived structure | 9.74e-08 | 118 |
endoderm | 9.74e-08 | 118 |
presumptive endoderm | 9.74e-08 | 118 |
liver | 1.88e-07 | 22 |
epithelial sac | 1.88e-07 | 22 |
digestive gland | 1.88e-07 | 22 |
epithelium of foregut-midgut junction | 1.88e-07 | 22 |
anatomical boundary | 1.88e-07 | 22 |
hepatobiliary system | 1.88e-07 | 22 |
foregut-midgut junction | 1.88e-07 | 22 |
hepatic diverticulum | 1.88e-07 | 22 |
liver primordium | 1.88e-07 | 22 |
septum transversum | 1.88e-07 | 22 |
liver bud | 1.88e-07 | 22 |
connective tissue | 2.19e-07 | 46 |
digestive system | 4.43e-07 | 116 |
digestive tract | 4.43e-07 | 116 |
primitive gut | 4.43e-07 | 116 |
digestive tract diverticulum | 5.90e-07 | 23 |
sac | 5.90e-07 | 23 |
musculoskeletal system | 6.64e-07 | 32 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.