FFCP PHASE1:Mm9::chr3:136333040..136333150,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=19055|HGNC=|MCL_coexpression_id=1523|UniProt=P63328|association_with_transcript=0bp_to_ENSMUST00000070198,ENSMUST00000124206_5end|description=CAGE_peak_1_at_Ppp3ca_5end|id=chr3:136333040..136333150,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!6.00e-10!63;UBERON:0001049!5.24e-08!52;UBERON:0005068!5.24e-08!52;UBERON:0006241!5.24e-08!52;UBERON:0007135!5.24e-08!52;UBERON:0003056!6.49e-08!49;UBERON:0002020!1.03e-07!34;UBERON:0002021!3.75e-07!10;UBERON:0000411!3.75e-07!10;UBERON:0001950!3.75e-07!10;UBERON:0000955!4.19e-07!50;UBERON:0006238!4.19e-07!50;UBERON:0002616!7.75e-07!49|ontology_enrichment_uberon_v019_2=UBERON:0002346,3.68e-09,64;UBERON:0003075,3.68e-09,64;UBERON:0007284,3.68e-09,64;UBERON:0000073,1.04e-08,54;UBERON:0010371,1.39e-08,73;UBERON:0001049,5.24e-08,52;UBERON:0005068,5.24e-08,52;UBERON:0006241,5.24e-08,52;UBERON:0007135,5.24e-08,52;UBERON:0003056,6.49e-08,49;UBERON:0002020,1.03e-07,34;UBERON:0004121,3.53e-07,95;UBERON:0000924,3.53e-07,95;UBERON:0006601,3.53e-07,95;UBERON:0002021,3.75e-07,10;UBERON:0000411,3.75e-07,10;UBERON:0001950,3.75e-07,10;UBERON:0010314,5.25e-07,92|phase1_expression=45.1619748835519,13.2610654902957,11.8299802241279,27.2217790176147,37.567179745976,24.6782529710478,22.1932008565749,17.8190186349375,22.2446180999633,22.2361300005894,2.39705155515707,1.91453181588807,15.5792664237397,14.5992072039726,19.9865857089398,20.0450514715928,10.4934281719222,77.6036926781265,84.7367199683466,65.7803960286947,43.4571212671967,19.1631535817709,11.4927907221132,15.6792574337539,16.9762867989706,14.3557991028755,17.230479846363,10.1271479362368,13.1116159424898,15.1218077855958,8.42575940490158,12.7006134691926,11.0711661765223,15.8481681015439,16.7533939455739,10.140313366868,14.9043630071529,110.492350514544,72.6641870407134,91.6166551954147,141.763788615474,124.997323747396,110.210850138072,21.150665419897,24.1277096302445,15.4179271815813,3.12956537739216,6.5407546914134,10.1055644057857,11.8602238435313,9.93903593540074,5.75010257459886,88.2536507863693,25.3876749703971,21.8460969442602,36.2735804810685,22.6361417551618,45.3791441204149,32.7752666592548,36.5003775697703,25.3532561402472,9.14880236586657,3.55717918444456,12.5985960419396,11.8663963508037,12.7886420690298,15.579205746957,14.2160772968975,29.4478498956077,24.5710807763677,21.453146057841,70.2701421633357,77.0831207921131,25.8455586343553,23.8655222835409,17.4651569455904,61.6648933596577,78.5277129223904,76.8032666281217,23.2119866405141,32.4781134788554,28.6502353806218,46.0651948352279,52.3369227329462,57.4521411640806,83.379889689048,80.5823713322923,54.9878365184637,15.22096485997,22.898182712356,68.6978838222976,23.2314446784974,10.879541339324,12.4131734076698,12.3457519315057,20.1612099193801,30.7573280088537,52.6629696766198,49.6191268791479,45.2274655373235,25.4926589795792,116.777094447029,188.555877382918,184.877342819866,21.4326130601102,21.2822286999083,19.2099289105618,27.8608666514506,67.5827876319118,18.1099409659086,17.0015620230813,14.6143429589828,15.912469310668,12.6607018064203,26.5750478126693,17.3419896034952,54.877282837031,31.9564578793005,53.0766331169925,45.1329511353272,49.2476586166678,45.5782737947109,22.3670113461747,175.375697409917,242.120393076354,20.4365644166873,17.4930081778644,20.3966928537759,19.0605340609597,72.9480413901487,91.5001205637253,77.0261178451859,88.3027546576764,106.121914792087,73.7647558186438,88.5837296349957,34.116186889856,41.0543003013307,12.6361379216837,190.449879577259,28.7566178947575,30.5769798896519,35.4722395716538,43.5536923545217,73.5474555825854,75.9714361289159,75.9920986179401,90.0287730171775,23.9280472155455,26.0966390631591,27.0964731212481,24.5499220318884,24.190110682627,29.253181987862,27.1632420058485,26.0734889532226,18.2575428701441,24.4480511758979,28.9846769383505,22.5767092063697,25.7978665979206,21.7875094367828,28.8828577413957,24.9890574319203,25.7626078521922,19.3003174142839,24.1446061259657,30.7092850425656,29.456213134513,31.6843205672654,37.6969964388229,34.0645970701024,28.1024147572545,35.1620817152174,150.147023274787,66.4763795970177,19.4947081960441,12.164726066523,13.650448034255,18.3466970769746,17.6548422011268,14.9245808221273,20.2364019898832,15.4082757151173,24.2009821387701,16.9639923365731,22.368833583224,27.0580801975965,23.9805827156518,21.5716658077013,18.371734239349,19.3167035056736,16.8804431848243,27.6481400515544,20.2873924211545,27.2892779312721,28.1231106393057,38.083750200443,27.3181840376791,22.8795729368383,18.6828486131236,19.4967518996445,17.1942523710546,10.3443965543978,7.07612382407531,8.99448449539415,9.94014594803664,11.8176808278684,17.569183772918,18.4125527968519,34.5348033030825,20.5921059891061,31.629005436018,25.3055844414582,29.9556166189978,20.7114679916632,12.0196267059681,28.4641677604387,78.520105820807,21.4125295300648,22.1632367961155,28.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| ||
|EntrezGene=19055 | |||
|HGNC= | |||
|MCL_coexpression_id=1523 | |||
|UniProt=P63328 | |||
|association_with_transcript=0bp_to_ENSMUST00000070198,ENSMUST00000124206_5end | |||
|description=CAGE_peak_1_at_Ppp3ca_5end | |||
|id=chr3:136333040..136333150,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!6.00e-10!63;UBERON:0001049!5.24e-08!52;UBERON:0005068!5.24e-08!52;UBERON:0006241!5.24e-08!52;UBERON:0007135!5.24e-08!52;UBERON:0003056!6.49e-08!49;UBERON:0002020!1.03e-07!34;UBERON:0002021!3.75e-07!10;UBERON:0000411!3.75e-07!10;UBERON:0001950!3.75e-07!10;UBERON:0000955!4.19e-07!50;UBERON:0006238!4.19e-07!50;UBERON:0002616!7.75e-07!49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,3.68e-09,64;UBERON:0003075,3.68e-09,64;UBERON:0007284,3.68e-09,64;UBERON:0000073,1.04e-08,54;UBERON:0010371,1.39e-08,73;UBERON:0001049,5.24e-08,52;UBERON:0005068,5.24e-08,52;UBERON:0006241,5.24e-08,52;UBERON:0007135,5.24e-08,52;UBERON:0003056,6.49e-08,49;UBERON:0002020,1.03e-07,34;UBERON:0004121,3.53e-07,95;UBERON:0000924,3.53e-07,95;UBERON:0006601,3.53e-07,95;UBERON:0002021,3.75e-07,10;UBERON:0000411,3.75e-07,10;UBERON:0001950,3.75e-07,10;UBERON:0010314,5.25e-07,92 | |||
|phase1_expression=45.1619748835519,13.2610654902957,11.8299802241279,27.2217790176147,37.567179745976,24.6782529710478,22.1932008565749,17.8190186349375,22.2446180999633,22.2361300005894,2.39705155515707,1.91453181588807,15.5792664237397,14.5992072039726,19.9865857089398,20.0450514715928,10.4934281719222,77.6036926781265,84.7367199683466,65.7803960286947,43.4571212671967,19.1631535817709,11.4927907221132,15.6792574337539,16.9762867989706,14.3557991028755,17.230479846363,10.1271479362368,13.1116159424898,15.1218077855958,8.42575940490158,12.7006134691926,11.0711661765223,15.8481681015439,16.7533939455739,10.140313366868,14.9043630071529,110.492350514544,72.6641870407134,91.6166551954147,141.763788615474,124.997323747396,110.210850138072,21.150665419897,24.1277096302445,15.4179271815813,3.12956537739216,6.5407546914134,10.1055644057857,11.8602238435313,9.93903593540074,5.75010257459886,88.2536507863693,25.3876749703971,21.8460969442602,36.2735804810685,22.6361417551618,45.3791441204149,32.7752666592548,36.5003775697703,25.3532561402472,9.14880236586657,3.55717918444456,12.5985960419396,11.8663963508037,12.7886420690298,15.579205746957,14.2160772968975,29.4478498956077,24.5710807763677,21.453146057841,70.2701421633357,77.0831207921131,25.8455586343553,23.8655222835409,17.4651569455904,61.6648933596577,78.5277129223904,76.8032666281217,23.2119866405141,32.4781134788554,28.6502353806218,46.0651948352279,52.3369227329462,57.4521411640806,83.379889689048,80.5823713322923,54.9878365184637,15.22096485997,22.898182712356,68.6978838222976,23.2314446784974,10.879541339324,12.4131734076698,12.3457519315057,20.1612099193801,30.7573280088537,52.6629696766198,49.6191268791479,45.2274655373235,25.4926589795792,116.777094447029,188.555877382918,184.877342819866,21.4326130601102,21.2822286999083,19.2099289105618,27.8608666514506,67.5827876319118,18.1099409659086,17.0015620230813,14.6143429589828,15.912469310668,12.6607018064203,26.5750478126693,17.3419896034952,54.877282837031,31.9564578793005,53.0766331169925,45.1329511353272,49.2476586166678,45.5782737947109,22.3670113461747,175.375697409917,242.120393076354,20.4365644166873,17.4930081778644,20.3966928537759,19.0605340609597,72.9480413901487,91.5001205637253,77.0261178451859,88.3027546576764,106.121914792087,73.7647558186438,88.5837296349957,34.116186889856,41.0543003013307,12.6361379216837,190.449879577259,28.7566178947575,30.5769798896519,35.4722395716538,43.5536923545217,73.5474555825854,75.9714361289159,75.9920986179401,90.0287730171775,23.9280472155455,26.0966390631591,27.0964731212481,24.5499220318884,24.190110682627,29.253181987862,27.1632420058485,26.0734889532226,18.2575428701441,24.4480511758979,28.9846769383505,22.5767092063697,25.7978665979206,21.7875094367828,28.8828577413957,24.9890574319203,25.7626078521922,19.3003174142839,24.1446061259657,30.7092850425656,29.456213134513,31.6843205672654,37.6969964388229,34.0645970701024,28.1024147572545,35.1620817152174,150.147023274787,66.4763795970177,19.4947081960441,12.164726066523,13.650448034255,18.3466970769746,17.6548422011268,14.9245808221273,20.2364019898832,15.4082757151173,24.2009821387701,16.9639923365731,22.368833583224,27.0580801975965,23.9805827156518,21.5716658077013,18.371734239349,19.3167035056736,16.8804431848243,27.6481400515544,20.2873924211545,27.2892779312721,28.1231106393057,38.083750200443,27.3181840376791,22.8795729368383,18.6828486131236,19.4967518996445,17.1942523710546,10.3443965543978,7.07612382407531,8.99448449539415,9.94014594803664,11.8176808278684,17.569183772918,18.4125527968519,34.5348033030825,20.5921059891061,31.629005436018,25.3055844414582,29.9556166189978,20.7114679916632,12.0196267059681,28.4641677604387,78.520105820807,21.4125295300648,22.1632367961155,28.3474293244564,32.3872542638133,45.3941957667321,53.5598191993531,94.6398192110324,70.3052742713612,57.8022839983303,67.2899123734596,70.1334986983359,64.2388132541132,64.3688310687726,24.1266054302836,17.4049818821987,20.1623351937805,23.4546234359023,59.7248194754586,64.1147925659351,42.4591508525589,83.3154059774431,15.4599027513966,14.4462335389756,20.0343759891503,17.9226598464414,27.1814382380521,36.2337959409706,17.8116708736954,17.82760733259,20.5549644532192,50.7687679946455,31.9365191718604,20.1214132143998,34.0433745048974,39.0979191444909,54.4255067193848,13.595715624679,16.6277956330613,21.3123740124165,23.0335476447003,23.6725063916824,26.1012576099903,30.900367005588,31.3717692978555,41.4008152895919,51.6551182017494,40.2228618667929,36.7674774214091,19.0864759673189,12.5477923269272,18.2186479776853,31.2118811210402,28.0039043635251,33.5680002028327,22.2259412853657,25.3445444708807,15.6755732439227,77.8465245134016,48.3116721118537,34.0689940328361,24.7282992205439,20.0545537925269,21.9948805658382,17.488850197791,85.851914830866,32.1237255899963,23.7344898157706,27.7791791054568,22.6042148405629,27.202151316484,31.5713879025001,34.6755997187465,39.1864066506242,42.1509920103493,31.5041303944987,15.9749676758473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| |||
|short_description=p1@Ppp3ca | |||
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Revision as of 01:38, 14 September 2013
Short description: | p1@Ppp3ca |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Ppp3ca_5end |
Coexpression cluster: | MCL_coexpression_mm9:1523 |
Association with transcript: | 0bp_to_ENSMUST00000070198, ENSMUST00000124206_5end |
EntrezGene: | Ppp3ca |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neurectoderm | 3.68e-09 | 64 |
neural plate | 3.68e-09 | 64 |
presumptive neural plate | 3.68e-09 | 64 |
regional part of nervous system | 1.04e-08 | 54 |
ecto-epithelium | 1.39e-08 | 73 |
neural tube | 5.24e-08 | 52 |
neural rod | 5.24e-08 | 52 |
future spinal cord | 5.24e-08 | 52 |
neural keel | 5.24e-08 | 52 |
pre-chordal neural plate | 6.49e-08 | 49 |
gray matter | 1.03e-07 | 34 |
ectoderm-derived structure | 3.53e-07 | 95 |
ectoderm | 3.53e-07 | 95 |
presumptive ectoderm | 3.53e-07 | 95 |
occipital lobe | 3.75e-07 | 10 |
visual cortex | 3.75e-07 | 10 |
neocortex | 3.75e-07 | 10 |
structure with developmental contribution from neural crest | 5.25e-07 | 92 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.