FFCP PHASE1:Mm9::chr3:130433228..130433270,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=100042557,100043876,619547,68436|HGNC=|MCL_coexpression_id=565|UniProt=Q9D1R9|association_with_transcript=0bp_to_ENSMUST00000062601,ENSMUST00000133802,ENSMUST00000135691,NM_001199350,uc008rje.2_5end|description=CAGE_peak_1_at_Gm10086_5end,CAGE_peak_1_at_Gm4705_5end,CAGE_peak_1_at_Rpl34-ps1_5end,CAGE_peak_1_at_Rpl34_5end|id=chr3:130433228..130433270,-|ontology_enrichment_celltype=CL:0000144!9.39e-17!121;CL:0000012!9.39e-17!121;CL:0002371!1.43e-15!118;CL:0000548!2.68e-15!115;CL:0000004!2.68e-15!115;CL:0000255!2.68e-15!115;CL:0000034!3.94e-15!97;CL:0000723!4.36e-14!91;CL:0000048!4.36e-14!91;CL:0000063!7.00e-13!66;CL:0000219!7.69e-11!54;CL:0002320!8.79e-11!46;CL:0000134!8.79e-11!46;CL:0000988!1.42e-10!32;CL:0002032!1.42e-10!32;CL:0000037!1.42e-10!32;CL:0000566!1.42e-10!32;CL:0000837!1.42e-10!32;CL:0002031!3.62e-07!25|ontology_enrichment_celltype_v019_2=CL:0000034,3.94e-15,97;CL:0000723,4.36e-14,91;CL:0000048,4.36e-14,91;CL:0000219,7.69e-11,54;CL:0002320,8.79e-11,46;CL:0000134,8.79e-11,46;CL:0000988,1.42e-10,32;CL:0002032,1.42e-10,32;CL:0000037,1.42e-10,32;CL:0000837,1.42e-10,32;CL:0002031,3.62e-07,25|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002384!8.79e-11!46|ontology_enrichment_uberon_v019_2=UBERON:0002384,8.79e-11,46|phase1_expression=28.5064947846533,15.0059425284925,13.1949779422965,12.0985684522732,13.023288978605,21.6564260766338,21.4923629347884,19.3684985162364,69.5496287429234,64.1336802122262,51.0229545312005,49.3789664181132,15.9216678836021,21.6802597999114,21.6521345180181,20.0450514715928,13.9912375625629,17.9813434254195,15.3568165638427,26.7365480632759,11.4808441703944,29.5887034578638,27.6871776487272,16.1592347021341,16.0586496747019,30.4342940980961,32.3071497119306,21.1161808032171,13.8717096203153,26.9672238843126,37.0289952794359,25.4012269383852,27.0628506537211,63.3926724061755,30.9071233133864,46.0469967643024,37.7713309085383,18.8339233831608,19.533383613095,15.7057123192139,24.7057224973026,14.3439551841274,16.9928623560904,13.7227531593379,14.9024088892686,18.9053154726532,28.9484797408774,24.41881751461,14.7189742432096,15.1655321277941,14.6985742706631,17.2503077237966,40.4356080599145,26.8383992544197,23.8626597391149,28.2985379639542,26.9341433542431,28.8776371675368,22.2548106945558,23.8045940672415,20.2826049121977,26.7687180334614,19.5644855144451,25.6471419425199,36.5880554149781,43.3392870117121,24.5672090625092,29.5848095097597,16.6940275816649,16.605730414798,17.2466468308133,24.8516356431309,19.6573001446936,17.0262210908786,23.6738313415044,12.8690630125403,12.1127469099328,13.1517958227743,15.3606533256243,18.5959665699573,23.4208367622169,20.8365348222704,18.7052609330925,21.3849791812038,16.5022107598955,13.258286346315,16.2303716110977,19.7583412574819,29.5332153999418,13.1494514585807,12.7540375028738,17.2084775396277,20.3991400112325,22.6675340487883,12.9955283489534,6.72040330646003,12.6399978118577,13.8048561288227,22.8611684050525,18.3736578745377,31.9714562893065,8.98285341900225,12.7402619853323,7.11066703153331,40.7003157101083,38.2573396867399,42.9695778262566,12.7885945285347,9.58070169494535,13.0629082377046,31.921300124969,33.1867371360234,26.9820131789588,28.4865790644457,15.7568867561844,13.8233250462643,11.6181634835156,6.65157041831594,7.07688441559899,13.1031148457401,10.1587098491781,19.8798853785441,18.6391761218122,7.61230072230023,5.44561437714983,9.70736809792647,22.2856131581012,59.9902730993408,37.9939978948463,7.48953197024113,4.57500602818627,10.0523481690292,8.16974304903699,10.7400492078739,14.7529511637288,12.1680947300818,12.7299204812895,13.1871388846699,13.3943061969848,5.89237196482127,22.7710775184731,21.380895712313,15.3052810334547,17.4817588689429,9.18492738542926,10.249097622788,10.4945931506896,9.8307280880826,17.2454394346274,11.535470890237,13.5482365606241,17.0972671293508,18.3511184488895,11.1440693287093,18.108828003899,25.2773518859486,58.2836945469985,47.866710723337,38.0779089190094,17.6056906655177,19.7001890384121,25.5688127274641,14.2046841351126,15.9379027715397,21.2888615784582,18.3701816352822,15.0233104783787,12.37712629092,10.5318303944627,15.1034066952768,6.97191762094359,8.77199924551994,10.9775057645525,8.32079796314305,6.72927835405207,8.54108282748061,7.93005079161115,16.1314845664762,23.8882840599462,27.1716906076713,12.5001437482431,9.27744213267376,11.1189021922435,13.1255682017666,13.2868137232463,13.8347121968169,17.3421294072186,9.74886713001639,10.7230247915516,15.2799299471218,16.6426298403515,12.7450414882795,24.6568271239006,23.6494421102139,11.270773567308,19.3468761453049,18.0375813065892,11.5724102819026,9.42224403151434,7.97094799089852,11.1469096767376,10.8589504251184,21.0481365231876,18.0192714173382,21.4249304673391,15.9652099793246,16.8373900752457,17.6059326619264,21.8978232532021,13.2340223227373,16.0513874507285,22.7885972946108,14.3768206527355,15.6299198020771,16.2259590019572,16.9227848224565,18.11913876571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| ||
|EntrezGene=100042557,100043876,619547,68436 | |||
|HGNC= | |||
|MCL_coexpression_id=565 | |||
|UniProt=Q9D1R9 | |||
|association_with_transcript=0bp_to_ENSMUST00000062601,ENSMUST00000133802,ENSMUST00000135691,NM_001199350,uc008rje.2_5end | |||
|description=CAGE_peak_1_at_Gm10086_5end,CAGE_peak_1_at_Gm4705_5end,CAGE_peak_1_at_Rpl34-ps1_5end,CAGE_peak_1_at_Rpl34_5end | |||
|id=chr3:130433228..130433270,- | |||
|ontology_enrichment_celltype=CL:0000144!9.39e-17!121;CL:0000012!9.39e-17!121;CL:0002371!1.43e-15!118;CL:0000548!2.68e-15!115;CL:0000004!2.68e-15!115;CL:0000255!2.68e-15!115;CL:0000034!3.94e-15!97;CL:0000723!4.36e-14!91;CL:0000048!4.36e-14!91;CL:0000063!7.00e-13!66;CL:0000219!7.69e-11!54;CL:0002320!8.79e-11!46;CL:0000134!8.79e-11!46;CL:0000988!1.42e-10!32;CL:0002032!1.42e-10!32;CL:0000037!1.42e-10!32;CL:0000566!1.42e-10!32;CL:0000837!1.42e-10!32;CL:0002031!3.62e-07!25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000034,3.94e-15,97;CL:0000723,4.36e-14,91;CL:0000048,4.36e-14,91;CL:0000219,7.69e-11,54;CL:0002320,8.79e-11,46;CL:0000134,8.79e-11,46;CL:0000988,1.42e-10,32;CL:0002032,1.42e-10,32;CL:0000037,1.42e-10,32;CL:0000837,1.42e-10,32;CL:0002031,3.62e-07,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002384!8.79e-11!46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,8.79e-11,46 | |||
|phase1_expression=28.5064947846533,15.0059425284925,13.1949779422965,12.0985684522732,13.023288978605,21.6564260766338,21.4923629347884,19.3684985162364,69.5496287429234,64.1336802122262,51.0229545312005,49.3789664181132,15.9216678836021,21.6802597999114,21.6521345180181,20.0450514715928,13.9912375625629,17.9813434254195,15.3568165638427,26.7365480632759,11.4808441703944,29.5887034578638,27.6871776487272,16.1592347021341,16.0586496747019,30.4342940980961,32.3071497119306,21.1161808032171,13.8717096203153,26.9672238843126,37.0289952794359,25.4012269383852,27.0628506537211,63.3926724061755,30.9071233133864,46.0469967643024,37.7713309085383,18.8339233831608,19.533383613095,15.7057123192139,24.7057224973026,14.3439551841274,16.9928623560904,13.7227531593379,14.9024088892686,18.9053154726532,28.9484797408774,24.41881751461,14.7189742432096,15.1655321277941,14.6985742706631,17.2503077237966,40.4356080599145,26.8383992544197,23.8626597391149,28.2985379639542,26.9341433542431,28.8776371675368,22.2548106945558,23.8045940672415,20.2826049121977,26.7687180334614,19.5644855144451,25.6471419425199,36.5880554149781,43.3392870117121,24.5672090625092,29.5848095097597,16.6940275816649,16.605730414798,17.2466468308133,24.8516356431309,19.6573001446936,17.0262210908786,23.6738313415044,12.8690630125403,12.1127469099328,13.1517958227743,15.3606533256243,18.5959665699573,23.4208367622169,20.8365348222704,18.7052609330925,21.3849791812038,16.5022107598955,13.258286346315,16.2303716110977,19.7583412574819,29.5332153999418,13.1494514585807,12.7540375028738,17.2084775396277,20.3991400112325,22.6675340487883,12.9955283489534,6.72040330646003,12.6399978118577,13.8048561288227,22.8611684050525,18.3736578745377,31.9714562893065,8.98285341900225,12.7402619853323,7.11066703153331,40.7003157101083,38.2573396867399,42.9695778262566,12.7885945285347,9.58070169494535,13.0629082377046,31.921300124969,33.1867371360234,26.9820131789588,28.4865790644457,15.7568867561844,13.8233250462643,11.6181634835156,6.65157041831594,7.07688441559899,13.1031148457401,10.1587098491781,19.8798853785441,18.6391761218122,7.61230072230023,5.44561437714983,9.70736809792647,22.2856131581012,59.9902730993408,37.9939978948463,7.48953197024113,4.57500602818627,10.0523481690292,8.16974304903699,10.7400492078739,14.7529511637288,12.1680947300818,12.7299204812895,13.1871388846699,13.3943061969848,5.89237196482127,22.7710775184731,21.380895712313,15.3052810334547,17.4817588689429,9.18492738542926,10.249097622788,10.4945931506896,9.8307280880826,17.2454394346274,11.535470890237,13.5482365606241,17.0972671293508,18.3511184488895,11.1440693287093,18.108828003899,25.2773518859486,58.2836945469985,47.866710723337,38.0779089190094,17.6056906655177,19.7001890384121,25.5688127274641,14.2046841351126,15.9379027715397,21.2888615784582,18.3701816352822,15.0233104783787,12.37712629092,10.5318303944627,15.1034066952768,6.97191762094359,8.77199924551994,10.9775057645525,8.32079796314305,6.72927835405207,8.54108282748061,7.93005079161115,16.1314845664762,23.8882840599462,27.1716906076713,12.5001437482431,9.27744213267376,11.1189021922435,13.1255682017666,13.2868137232463,13.8347121968169,17.3421294072186,9.74886713001639,10.7230247915516,15.2799299471218,16.6426298403515,12.7450414882795,24.6568271239006,23.6494421102139,11.270773567308,19.3468761453049,18.0375813065892,11.5724102819026,9.42224403151434,7.97094799089852,11.1469096767376,10.8589504251184,21.0481365231876,18.0192714173382,21.4249304673391,15.9652099793246,16.8373900752457,17.6059326619264,21.8978232532021,13.2340223227373,16.0513874507285,22.7885972946108,14.3768206527355,15.6299198020771,16.2259590019572,16.9227848224565,18.1191387657131,21.7099584613515,8.12914036733061,33.1609970598348,11.2445833744998,24.4432923516271,19.4792906079457,11.8929442783689,9.75978927632656,14.4398899414771,11.3497303756458,10.4088404134924,9.40783135079174,14.5838350097007,11.7425787668809,12.729117155173,13.5712155545345,15.2293591469239,15.2446924635901,13.2449638226272,9.15138362930414,8.79087649441524,56.7214911003297,14.895784705058,23.6631164562193,21.8645696806118,13.3562506594335,14.8160654730582,15.1503098376028,16.7015153165411,15.7876173653209,14.6127928955656,18.9738133414331,4.81981974632711,9.65192579416227,17.2723635557238,10.5876523579824,9.73323725537959,17.2568679841952,33.7465084255424,31.4416499243341,37.5324108714237,27.4630760379119,26.1319875752338,17.3146956422708,18.1766864738753,21.0333453246986,38.2404477102337,31.6255825724996,42.2855727317566,9.19186935535228,23.4079422240703,25.7423780727681,23.148399783412,13.8325382240973,20.5124140242381,19.087686389846,18.5723618959906,11.4989136951218,15.8874053147865,18.7449138346718,10.7176064411962,10.4951877352339,8.7453741145826,12.6534684643325,10.9974402829191,9.61886760878507,7.78786268444141,15.2075083910089,20.8450736642855,21.852954229626,19.0252141574738,17.0867784651281,22.1914828010327,27.7064840889984,24.9113585136111,23.7703954943609,7.63736494412091,14.55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| |||
|short_description=p1@Gm10086,p1@Gm4705,p1@Rpl34-ps1,p1@Rpl34 | |||
}} | |||
Revision as of 01:31, 14 September 2013
| Short description: | p1@Gm10086, p1@Gm4705, p1@Rpl34-ps1, p1@Rpl34 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_Gm10086_5end, CAGE_peak_1_at_Gm4705_5end, CAGE_peak_1_at_Rpl34-ps1_5end, CAGE_peak_1_at_Rpl34_5end |
| Coexpression cluster: | MCL_coexpression_mm9:565 |
| Association with transcript: | 0bp_to_ENSMUST00000062601, ENSMUST00000133802, ENSMUST00000135691, NM_001199350, uc008rje.2_5end |
| EntrezGene: | 100042557,100043876,619547,68436 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
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CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| stem cell | 3.94e-15 | 97 |
| somatic stem cell | 4.36e-14 | 91 |
| multi fate stem cell | 4.36e-14 | 91 |
| motile cell | 7.69e-11 | 54 |
| connective tissue cell | 8.79e-11 | 46 |
| mesenchymal cell | 8.79e-11 | 46 |
| hematopoietic cell | 1.42e-10 | 32 |
| hematopoietic oligopotent progenitor cell | 1.42e-10 | 32 |
| hematopoietic stem cell | 1.42e-10 | 32 |
| hematopoietic multipotent progenitor cell | 1.42e-10 | 32 |
| hematopoietic lineage restricted progenitor cell | 3.62e-07 | 25 |
| Ontology term | p-value | n |
|---|---|---|
| connective tissue | 8.79e-11 | 46 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
