FFCP PHASE1:Mm9::chr2:56967334..56967366,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=18227|HGNC=|MCL_coexpression_id=7|UniProt=Q06219,Q3TYI4|association_with_transcript=82bp_to_ENSMUST00000028166,ENSMUST00000140165,NM_013613,uc008jrw.2,uc012bvn.1_5end|description=CAGE_peak_1_at_Nr4a2_5end|id=chr2:56967334..56967366,-|ontology_enrichment_celltype=CL:0000117!1.08e-11!23;CL:0000337!1.08e-11!23;CL:0000540!1.34e-10!33;CL:0000047!1.34e-10!33;CL:0000031!1.34e-10!33;CL:0000404!1.34e-10!33|ontology_enrichment_celltype_v019_2=CL:0000117,4.28e-13,23;CL:0000337,4.28e-13,23;CL:0000540,5.54e-11,33;CL:0000047,5.54e-11,33;CL:0000031,5.54e-11,33;CL:0000404,5.54e-11,33;CL:0000393,2.12e-07,39;CL:0000211,2.12e-07,39;CL:0000221,3.97e-07,44;CL:0000133,3.97e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!5.85e-17!63;UBERON:0002020!1.62e-15!34;UBERON:0000073!3.51e-15!75;UBERON:0001016!3.51e-15!75;UBERON:0004121!3.74e-15!102;UBERON:0000924!3.74e-15!102;UBERON:0006601!3.74e-15!102;UBERON:0002346!4.57e-15!71;UBERON:0003075!4.57e-15!71;UBERON:0007284!4.57e-15!71;UBERON:0001017!6.19e-15!73;UBERON:0005743!6.19e-15!73;UBERON:0000955!7.25e-15!50;UBERON:0006238!7.25e-15!50;UBERON:0001049!7.60e-15!52;UBERON:0005068!7.60e-15!52;UBERON:0006241!7.60e-15!52;UBERON:0007135!7.60e-15!52;UBERON:0002616!2.77e-14!49;UBERON:0003056!3.41e-14!49;UBERON:0002780!6.78e-14!39;UBERON:0001890!6.78e-14!39;UBERON:0006240!6.78e-14!39;UBERON:0003080!7.45e-14!40;UBERON:0002791!9.11e-14!29;UBERON:0003528!9.11e-14!29;UBERON:0001893!9.11e-14!29;UBERON:0000153!4.04e-13!94;UBERON:0007811!6.33e-13!86;UBERON:0000956!7.77e-10!21;UBERON:0001869!7.77e-10!21;UBERON:0000203!7.77e-10!21;UBERON:0002619!6.67e-08!17;UBERON:0002021!9.03e-07!10;UBERON:0000411!9.03e-07!10;UBERON:0001950!9.03e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0000073,9.95e-18,54;UBERON:0002020,3.21e-17,34;UBERON:0001016,5.04e-17,75;UBERON:0001017,9.62e-17,73;UBERON:0001049,2.93e-16,52;UBERON:0005068,2.93e-16,52;UBERON:0006241,2.93e-16,52;UBERON:0007135,2.93e-16,52;UBERON:0002346,1.18e-15,64;UBERON:0003075,1.18e-15,64;UBERON:0007284,1.18e-15,64;UBERON:0003528,3.17e-15,29;UBERON:0002791,3.17e-15,29;UBERON:0001893,3.17e-15,29;UBERON:0004121,4.40e-15,95;UBERON:0000924,4.40e-15,95;UBERON:0006601,4.40e-15,95;UBERON:0000955,7.20e-15,47;UBERON:0006238,7.20e-15,47;UBERON:0002780,7.47e-15,39;UBERON:0001890,7.47e-15,39;UBERON:0006240,7.47e-15,39;UBERON:0003080,8.15e-15,40;UBERON:0003056,1.68e-14,49;UBERON:0002616,3.16e-14,46;UBERON:0010371,2.50e-13,73;UBERON:0000956,9.24e-11,21;UBERON:0001869,9.24e-11,21;UBERON:0000203,9.24e-11,21;UBERON:0010314,1.37e-08,92;UBERON:0002619,1.44e-08,17;UBERON:0002021,1.70e-07,10;UBERON:0000411,1.70e-07,10;UBERON:0001950,1.70e-07,10|phase1_expression=10.2495262147068,2.09385244583617,0.909998478779072,2.41971369045464,6.01074875935617,4.70061961353291,3.50418960893289,6.58528949552039,759.977522174697,954.749202867411,95.1971903333808,40.7635732466169,2.22560948910567,1.74840804837995,0.333109761815663,0,0,0.157731082679119,0.137114433605739,0,4.67738095830884,0.695036658406197,0.783599367416806,0.47997726838022,0,1.14846392823004,1.7230479846363,2.37018355954478,0.190023419456374,0.252030129759931,0.886922042621219,1.27006134691926,0,0,3.17736781726402,2.32728503501889,5.10423390655923,0,0,0,0,0,0,0.251793635951155,0,0,0,0.218025156380447,0.439372365468944,0.194429899074283,0,0,10.9058693937529,33.3666585325218,65.202197033638,0,0,0,15.3760510253294,20.1016572123373,15.8457850876545,0,0,0,0,0,0,0,7.56934169851887,13.2305819565057,9.25429829946081,2.85650984403804,4.8591079009355,15.6788222995141,13.9934387686625,22.0612508786405,4.40463523997555,10.7257363991558,9.06278546211836,32.1802542061673,27.2633177935181,26.045668527838,5.30447698102624,10.1297269805702,9.77908785771585,7.07108605136802,6.97621235915604,12.3023634244698,2.87759534666099,1.81371744256285,0.869593466105033,0,0,0,0,0,1.40444420131752,0,0,0,10.563256483251,0,0,0,2.59789249213457,2.28023878927589,3.0331466700887,2.2836775943812,2.33044095282455,14.398887489288,0.173485326766136,1.21786191324856,0.922461989024234,0.904335843315735,1.41106448562846,4.27266410520897,0.494389935468748,4.33798070759735,0,0.808834249737046,0.441683036920787,0.484875253135222,0,7.02673912827713,2.72280718857492,1.78819938646014,24.8017307727255,5.39912457894067,14.9942867946216,1.79748767285787,13.7250180845588,5.90575454930463,32.5051478759557,24.8043993610421,8.10373373782284,7.30085683804909,0.203678727700633,0.497627882440372,1.26361379216837,6.10281382070775,0.520481771850815,0.229902104433473,0.900310649026746,3.76762044589288,4.49040894398764,4.22775276940004,4.8724896771059,2.32833033665114,2.58681591519411,1.89106080167819,2.63926686245923,1.31517439456545,1.39023624612799,1.0447564995665,0.411564272815887,0.59710280045548,1.40442637462647,3.86021860672073,6.81992398549422,0.621377317606506,0.469052119962192,0.180062061461015,0.23674473558521,0.196764231747404,0.308534225774757,0,0,0.583826711835847,0.16455984991348,0.1641674640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| ||
|EntrezGene=18227 | |||
|HGNC= | |||
|MCL_coexpression_id=7 | |||
|UniProt=Q06219,Q3TYI4 | |||
|association_with_transcript=82bp_to_ENSMUST00000028166,ENSMUST00000140165,NM_013613,uc008jrw.2,uc012bvn.1_5end | |||
|description=CAGE_peak_1_at_Nr4a2_5end | |||
|id=chr2:56967334..56967366,- | |||
|ontology_enrichment_celltype=CL:0000117!1.08e-11!23;CL:0000337!1.08e-11!23;CL:0000540!1.34e-10!33;CL:0000047!1.34e-10!33;CL:0000031!1.34e-10!33;CL:0000404!1.34e-10!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.28e-13,23;CL:0000337,4.28e-13,23;CL:0000540,5.54e-11,33;CL:0000047,5.54e-11,33;CL:0000031,5.54e-11,33;CL:0000404,5.54e-11,33;CL:0000393,2.12e-07,39;CL:0000211,2.12e-07,39;CL:0000221,3.97e-07,44;CL:0000133,3.97e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!5.85e-17!63;UBERON:0002020!1.62e-15!34;UBERON:0000073!3.51e-15!75;UBERON:0001016!3.51e-15!75;UBERON:0004121!3.74e-15!102;UBERON:0000924!3.74e-15!102;UBERON:0006601!3.74e-15!102;UBERON:0002346!4.57e-15!71;UBERON:0003075!4.57e-15!71;UBERON:0007284!4.57e-15!71;UBERON:0001017!6.19e-15!73;UBERON:0005743!6.19e-15!73;UBERON:0000955!7.25e-15!50;UBERON:0006238!7.25e-15!50;UBERON:0001049!7.60e-15!52;UBERON:0005068!7.60e-15!52;UBERON:0006241!7.60e-15!52;UBERON:0007135!7.60e-15!52;UBERON:0002616!2.77e-14!49;UBERON:0003056!3.41e-14!49;UBERON:0002780!6.78e-14!39;UBERON:0001890!6.78e-14!39;UBERON:0006240!6.78e-14!39;UBERON:0003080!7.45e-14!40;UBERON:0002791!9.11e-14!29;UBERON:0003528!9.11e-14!29;UBERON:0001893!9.11e-14!29;UBERON:0000153!4.04e-13!94;UBERON:0007811!6.33e-13!86;UBERON:0000956!7.77e-10!21;UBERON:0001869!7.77e-10!21;UBERON:0000203!7.77e-10!21;UBERON:0002619!6.67e-08!17;UBERON:0002021!9.03e-07!10;UBERON:0000411!9.03e-07!10;UBERON:0001950!9.03e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,9.95e-18,54;UBERON:0002020,3.21e-17,34;UBERON:0001016,5.04e-17,75;UBERON:0001017,9.62e-17,73;UBERON:0001049,2.93e-16,52;UBERON:0005068,2.93e-16,52;UBERON:0006241,2.93e-16,52;UBERON:0007135,2.93e-16,52;UBERON:0002346,1.18e-15,64;UBERON:0003075,1.18e-15,64;UBERON:0007284,1.18e-15,64;UBERON:0003528,3.17e-15,29;UBERON:0002791,3.17e-15,29;UBERON:0001893,3.17e-15,29;UBERON:0004121,4.40e-15,95;UBERON:0000924,4.40e-15,95;UBERON:0006601,4.40e-15,95;UBERON:0000955,7.20e-15,47;UBERON:0006238,7.20e-15,47;UBERON:0002780,7.47e-15,39;UBERON:0001890,7.47e-15,39;UBERON:0006240,7.47e-15,39;UBERON:0003080,8.15e-15,40;UBERON:0003056,1.68e-14,49;UBERON:0002616,3.16e-14,46;UBERON:0010371,2.50e-13,73;UBERON:0000956,9.24e-11,21;UBERON:0001869,9.24e-11,21;UBERON:0000203,9.24e-11,21;UBERON:0010314,1.37e-08,92;UBERON:0002619,1.44e-08,17;UBERON:0002021,1.70e-07,10;UBERON:0000411,1.70e-07,10;UBERON:0001950,1.70e-07,10 | |||
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| |||
|short_description=p1@Nr4a2 | |||
}} |
Revision as of 00:09, 14 September 2013
Short description: | p1@Nr4a2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Nr4a2_5end |
Coexpression cluster: | MCL_coexpression_mm9:7 |
Association with transcript: | 82bp_to_ENSMUST00000028166, ENSMUST00000140165, NM_013613, uc008jrw.2, uc012bvn.1_5end |
EntrezGene: | Nr4a2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.28e-13 | 23 |
neuroblast (sensu Vertebrata) | 4.28e-13 | 23 |
neuron | 5.54e-11 | 33 |
neuronal stem cell | 5.54e-11 | 33 |
neuroblast | 5.54e-11 | 33 |
electrically signaling cell | 5.54e-11 | 33 |
electrically responsive cell | 2.12e-07 | 39 |
electrically active cell | 2.12e-07 | 39 |
ectodermal cell | 3.97e-07 | 44 |
neurectodermal cell | 3.97e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 9.95e-18 | 54 |
gray matter | 3.21e-17 | 34 |
nervous system | 5.04e-17 | 75 |
central nervous system | 9.62e-17 | 73 |
neural tube | 2.93e-16 | 52 |
neural rod | 2.93e-16 | 52 |
future spinal cord | 2.93e-16 | 52 |
neural keel | 2.93e-16 | 52 |
neurectoderm | 1.18e-15 | 64 |
neural plate | 1.18e-15 | 64 |
presumptive neural plate | 1.18e-15 | 64 |
brain grey matter | 3.17e-15 | 29 |
regional part of telencephalon | 3.17e-15 | 29 |
telencephalon | 3.17e-15 | 29 |
ectoderm-derived structure | 4.40e-15 | 95 |
ectoderm | 4.40e-15 | 95 |
presumptive ectoderm | 4.40e-15 | 95 |
brain | 7.20e-15 | 47 |
future brain | 7.20e-15 | 47 |
regional part of forebrain | 7.47e-15 | 39 |
forebrain | 7.47e-15 | 39 |
future forebrain | 7.47e-15 | 39 |
anterior neural tube | 8.15e-15 | 40 |
pre-chordal neural plate | 1.68e-14 | 49 |
regional part of brain | 3.16e-14 | 46 |
ecto-epithelium | 2.50e-13 | 73 |
cerebral cortex | 9.24e-11 | 21 |
cerebral hemisphere | 9.24e-11 | 21 |
pallium | 9.24e-11 | 21 |
structure with developmental contribution from neural crest | 1.37e-08 | 92 |
regional part of cerebral cortex | 1.44e-08 | 17 |
occipital lobe | 1.70e-07 | 10 |
visual cortex | 1.70e-07 | 10 |
neocortex | 1.70e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.