FFCP PHASE1:Mm9::chr2:131178570..131178592,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=51902|HGNC=|MCL_coexpression_id=335|UniProt=|association_with_transcript=5bp_to_ENSMUST00000148058_5end|description=CAGE_peak_1_at_Rnf24_5end|id=chr2:131178570..131178592,-|ontology_enrichment_celltype=CL:0000117!5.61e-11!23;CL:0000337!5.61e-11!23;CL:0000540!2.93e-10!33;CL:0000047!2.93e-10!33;CL:0000031!2.93e-10!33;CL:0000404!2.93e-10!33;CL:0000393!3.76e-10!39;CL:0000211!3.76e-10!39;CL:0000221!7.49e-08!44;CL:0000133!7.49e-08!44;CL:0002319!9.69e-08!43;CL:0000055!2.27e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,5.60e-11,23;CL:0000337,5.60e-11,23;CL:0000540,2.93e-10,33;CL:0000047,2.93e-10,33;CL:0000031,2.93e-10,33;CL:0000404,2.93e-10,33;CL:0000393,3.75e-10,39;CL:0000211,3.75e-10,39;CL:0000221,7.49e-08,44;CL:0000133,7.49e-08,44;CL:0002319,9.69e-08,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.01e-17!73;UBERON:0005743!1.01e-17!73;UBERON:0000033!2.84e-17!63;UBERON:0000073!3.15e-17!75;UBERON:0001016!3.15e-17!75;UBERON:0003056!2.34e-16!49;UBERON:0001049!2.81e-15!52;UBERON:0005068!2.81e-15!52;UBERON:0006241!2.81e-15!52;UBERON:0007135!2.81e-15!52;UBERON:0000955!1.09e-14!50;UBERON:0006238!1.09e-14!50;UBERON:0002346!1.87e-14!71;UBERON:0003075!1.87e-14!71;UBERON:0007284!1.87e-14!71;UBERON:0002616!2.57e-14!49;UBERON:0002020!2.79e-14!34;UBERON:0003080!1.04e-13!40;UBERON:0004121!1.54e-13!102;UBERON:0000924!1.54e-13!102;UBERON:0006601!1.54e-13!102;UBERON:0002780!3.15e-13!39;UBERON:0001890!3.15e-13!39;UBERON:0006240!3.15e-13!39;UBERON:0002791!6.18e-13!29;UBERON:0003528!6.18e-13!29;UBERON:0001893!6.18e-13!29;UBERON:0000956!6.36e-10!21;UBERON:0001869!6.36e-10!21;UBERON:0000203!6.36e-10!21;UBERON:0002619!8.33e-08!17;UBERON:0000153!1.35e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.92e-18,64;UBERON:0003075,1.92e-18,64;UBERON:0007284,1.92e-18,64;UBERON:0001017,1.01e-17,73;UBERON:0001016,3.14e-17,75;UBERON:0004121,1.82e-16,95;UBERON:0000924,1.82e-16,95;UBERON:0006601,1.82e-16,95;UBERON:0003056,2.34e-16,49;UBERON:0010371,7.63e-16,73;UBERON:0000073,7.90e-16,54;UBERON:0001049,2.81e-15,52;UBERON:0005068,2.81e-15,52;UBERON:0006241,2.81e-15,52;UBERON:0007135,2.81e-15,52;UBERON:0002020,2.79e-14,34;UBERON:0000955,8.65e-14,47;UBERON:0006238,8.65e-14,47;UBERON:0003080,1.04e-13,40;UBERON:0002616,2.02e-13,46;UBERON:0002780,3.15e-13,39;UBERON:0001890,3.15e-13,39;UBERON:0006240,3.15e-13,39;UBERON:0003528,6.17e-13,29;UBERON:0002791,6.17e-13,29;UBERON:0001893,6.17e-13,29;UBERON:0000956,6.36e-10,21;UBERON:0001869,6.36e-10,21;UBERON:0000203,6.36e-10,21;UBERON:0010314,2.39e-08,92;UBERON:0002619,8.33e-08,17|phase1_expression=16.1750335575842,28.6159834264276,37.7649368693315,6.0492842261366,7.51343594919521,3.69334398206158,9.57811826441655,1.54947988129892,12.67098499365,17.5548394741495,0.856089841127525,1.03703806693937,1.19840510951844,1.39872643870396,1.66554880907831,0.404950534779652,1.39912375625629,1.41957974411207,1.50825876966313,1.27316895539409,24.4924675635081,4.76596565764249,3.39559725880616,16.6392119705143,18.5821517664408,27.563134277521,17.6612418425221,14.2211013572687,4.56056206695297,3.02436155711917,10.199603490144,1.27006134691926,1.23012957516914,0,0.288851619751275,0.332469290716985,1.22501613757421,20.0895182753716,13.2827008569046,17.2762835511353,39.411509698078,19.1252735788365,13.5942898848723,16.8701736087274,13.8886395770735,9.54443111240744,3.12956537739216,7.41285531693518,5.05278220289285,8.36048566019419,6.29938897314131,7.18762821824858,4.69791296961662,10.1550699881588,6.38578218370682,7.46052364504246,4.29800159908135,7.73508138416164,28.7289374420629,43.9062512795787,49.438849473482,4.40497891689872,8.00365316500025,1.7997994345628,2.96659908770092,2.8419204597844,7.19040265244171,6.14749288514487,22.5006458709397,25.3811164063578,23.7667206327062,9.99778445413313,12.1477697523387,26.0905402327852,24.0572132255773,47.7993769037211,15.4162233399144,11.6195477657521,14.8998337258556,35.2136388239618,32.4781134788554,32.2966289745191,8.93385596804419,16.8828783009504,12.2238598221448,16.7938293719991,12.8134512719193,22.7407323906867,6.43672643332064,6.12129636864963,13.0439019915755,2.58127163094416,14.2793980078628,3.77792234146472,5.84798775702902,4.48026887097336,6.60088774619234,14.4865774191349,11.4305842025262,13.0735642568826,10.140726223921,10.2661181931454,2.54805239706646,0,12.7729714196616,16.7217511213565,13.6491600153991,6.50848114398642,4.66088190564909,6.08612770165782,2.77576522825817,2.74018930480927,4.15107895060905,2.86373017049983,4.70354828542819,4.77533047052767,2.71914464507811,21.1115061103071,4.42305275974937,9.22071044700232,4.19598885074748,3.39412677194655,1.86391761218122,15.8101630386235,8.79676168616511,7.40825460104915,12.2211426996039,6.59893004092748,9.02198612218759,19.472783122627,16.4700217014706,13.9476330845279,20.5112697826886,21.2243829584174,16.8308316093244,15.8996437806402,7.43427356107309,6.09594155989456,4.54900965180614,29.2514179682199,11.7108398666433,11.4951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| ||
|EntrezGene=51902 | |||
|HGNC= | |||
|MCL_coexpression_id=335 | |||
|UniProt= | |||
|association_with_transcript=5bp_to_ENSMUST00000148058_5end | |||
|description=CAGE_peak_1_at_Rnf24_5end | |||
|id=chr2:131178570..131178592,- | |||
|ontology_enrichment_celltype=CL:0000117!5.61e-11!23;CL:0000337!5.61e-11!23;CL:0000540!2.93e-10!33;CL:0000047!2.93e-10!33;CL:0000031!2.93e-10!33;CL:0000404!2.93e-10!33;CL:0000393!3.76e-10!39;CL:0000211!3.76e-10!39;CL:0000221!7.49e-08!44;CL:0000133!7.49e-08!44;CL:0002319!9.69e-08!43;CL:0000055!2.27e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.60e-11,23;CL:0000337,5.60e-11,23;CL:0000540,2.93e-10,33;CL:0000047,2.93e-10,33;CL:0000031,2.93e-10,33;CL:0000404,2.93e-10,33;CL:0000393,3.75e-10,39;CL:0000211,3.75e-10,39;CL:0000221,7.49e-08,44;CL:0000133,7.49e-08,44;CL:0002319,9.69e-08,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.01e-17!73;UBERON:0005743!1.01e-17!73;UBERON:0000033!2.84e-17!63;UBERON:0000073!3.15e-17!75;UBERON:0001016!3.15e-17!75;UBERON:0003056!2.34e-16!49;UBERON:0001049!2.81e-15!52;UBERON:0005068!2.81e-15!52;UBERON:0006241!2.81e-15!52;UBERON:0007135!2.81e-15!52;UBERON:0000955!1.09e-14!50;UBERON:0006238!1.09e-14!50;UBERON:0002346!1.87e-14!71;UBERON:0003075!1.87e-14!71;UBERON:0007284!1.87e-14!71;UBERON:0002616!2.57e-14!49;UBERON:0002020!2.79e-14!34;UBERON:0003080!1.04e-13!40;UBERON:0004121!1.54e-13!102;UBERON:0000924!1.54e-13!102;UBERON:0006601!1.54e-13!102;UBERON:0002780!3.15e-13!39;UBERON:0001890!3.15e-13!39;UBERON:0006240!3.15e-13!39;UBERON:0002791!6.18e-13!29;UBERON:0003528!6.18e-13!29;UBERON:0001893!6.18e-13!29;UBERON:0000956!6.36e-10!21;UBERON:0001869!6.36e-10!21;UBERON:0000203!6.36e-10!21;UBERON:0002619!8.33e-08!17;UBERON:0000153!1.35e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.92e-18,64;UBERON:0003075,1.92e-18,64;UBERON:0007284,1.92e-18,64;UBERON:0001017,1.01e-17,73;UBERON:0001016,3.14e-17,75;UBERON:0004121,1.82e-16,95;UBERON:0000924,1.82e-16,95;UBERON:0006601,1.82e-16,95;UBERON:0003056,2.34e-16,49;UBERON:0010371,7.63e-16,73;UBERON:0000073,7.90e-16,54;UBERON:0001049,2.81e-15,52;UBERON:0005068,2.81e-15,52;UBERON:0006241,2.81e-15,52;UBERON:0007135,2.81e-15,52;UBERON:0002020,2.79e-14,34;UBERON:0000955,8.65e-14,47;UBERON:0006238,8.65e-14,47;UBERON:0003080,1.04e-13,40;UBERON:0002616,2.02e-13,46;UBERON:0002780,3.15e-13,39;UBERON:0001890,3.15e-13,39;UBERON:0006240,3.15e-13,39;UBERON:0003528,6.17e-13,29;UBERON:0002791,6.17e-13,29;UBERON:0001893,6.17e-13,29;UBERON:0000956,6.36e-10,21;UBERON:0001869,6.36e-10,21;UBERON:0000203,6.36e-10,21;UBERON:0010314,2.39e-08,92;UBERON:0002619,8.33e-08,17 | |||
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| |||
|short_description=p1@Rnf24 | |||
}} |
Revision as of 22:06, 13 September 2013
Short description: | p1@Rnf24 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rnf24_5end |
Coexpression cluster: | MCL_coexpression_mm9:335 |
Association with transcript: | 5bp_to_ENSMUST00000148058_5end |
EntrezGene: | Rnf24 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.60e-11 | 23 |
neuroblast (sensu Vertebrata) | 5.60e-11 | 23 |
neuron | 2.93e-10 | 33 |
neuronal stem cell | 2.93e-10 | 33 |
neuroblast | 2.93e-10 | 33 |
electrically signaling cell | 2.93e-10 | 33 |
electrically responsive cell | 3.75e-10 | 39 |
electrically active cell | 3.75e-10 | 39 |
ectodermal cell | 7.49e-08 | 44 |
neurectodermal cell | 7.49e-08 | 44 |
neural cell | 9.69e-08 | 43 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 1.92e-18 | 64 |
neural plate | 1.92e-18 | 64 |
presumptive neural plate | 1.92e-18 | 64 |
central nervous system | 1.01e-17 | 73 |
nervous system | 3.14e-17 | 75 |
ectoderm-derived structure | 1.82e-16 | 95 |
ectoderm | 1.82e-16 | 95 |
presumptive ectoderm | 1.82e-16 | 95 |
pre-chordal neural plate | 2.34e-16 | 49 |
ecto-epithelium | 7.63e-16 | 73 |
regional part of nervous system | 7.90e-16 | 54 |
neural tube | 2.81e-15 | 52 |
neural rod | 2.81e-15 | 52 |
future spinal cord | 2.81e-15 | 52 |
neural keel | 2.81e-15 | 52 |
gray matter | 2.79e-14 | 34 |
brain | 8.65e-14 | 47 |
future brain | 8.65e-14 | 47 |
anterior neural tube | 1.04e-13 | 40 |
regional part of brain | 2.02e-13 | 46 |
regional part of forebrain | 3.15e-13 | 39 |
forebrain | 3.15e-13 | 39 |
future forebrain | 3.15e-13 | 39 |
brain grey matter | 6.17e-13 | 29 |
regional part of telencephalon | 6.17e-13 | 29 |
telencephalon | 6.17e-13 | 29 |
cerebral cortex | 6.36e-10 | 21 |
cerebral hemisphere | 6.36e-10 | 21 |
pallium | 6.36e-10 | 21 |
structure with developmental contribution from neural crest | 2.39e-08 | 92 |
regional part of cerebral cortex | 8.33e-08 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.