FFCP PHASE1:Mm9::chr2:120676164..120676181,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=140810|HGNC=|MCL_coexpression_id=60|UniProt=|association_with_transcript=0bp_to_ENSMUST00000141921_5end|description=CAGE_peak_3_at_Ttbk2_5end|id=chr2:120676164..120676181,-|ontology_enrichment_celltype=CL:0000117!4.58e-08!23;CL:0000337!4.58e-08!23|ontology_enrichment_celltype_v019_2=CL:0000117,3.94e-08,23;CL:0000337,3.94e-08,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!1.49e-13!52;UBERON:0005068!1.49e-13!52;UBERON:0006241!1.49e-13!52;UBERON:0007135!1.49e-13!52;UBERON:0002020!8.44e-13!34;UBERON:0003056!1.39e-11!49;UBERON:0000955!1.65e-11!50;UBERON:0006238!1.65e-11!50;UBERON:0000033!1.72e-11!63;UBERON:0002346!3.50e-11!71;UBERON:0003075!3.50e-11!71;UBERON:0007284!3.50e-11!71;UBERON:0002616!4.74e-11!49;UBERON:0001017!9.66e-11!73;UBERON:0005743!9.66e-11!73;UBERON:0003080!1.20e-10!40;UBERON:0002791!1.78e-10!29;UBERON:0003528!1.78e-10!29;UBERON:0001893!1.78e-10!29;UBERON:0002780!3.75e-10!39;UBERON:0001890!3.75e-10!39;UBERON:0006240!3.75e-10!39;UBERON:0000073!4.56e-10!75;UBERON:0001016!4.56e-10!75;UBERON:0007811!1.48e-09!86;UBERON:0000153!1.53e-09!94;UBERON:0004121!3.56e-08!102;UBERON:0000924!3.56e-08!102;UBERON:0006601!3.56e-08!102;UBERON:0000956!4.94e-08!21;UBERON:0001869!4.94e-08!21;UBERON:0000203!4.94e-08!21;UBERON:0000468!9.12e-08!333|ontology_enrichment_uberon_v019_2=UBERON:0001049,6.21e-14,52;UBERON:0005068,6.21e-14,52;UBERON:0006241,6.21e-14,52;UBERON:0007135,6.21e-14,52;UBERON:0000073,1.16e-13,54;UBERON:0002346,1.35e-13,64;UBERON:0003075,1.35e-13,64;UBERON:0007284,1.35e-13,64;UBERON:0002020,5.68e-13,34;UBERON:0003056,1.01e-11,49;UBERON:0000955,1.33e-11,47;UBERON:0006238,1.33e-11,47;UBERON:0010371,1.98e-11,73;UBERON:0002616,3.89e-11,46;UBERON:0001017,4.73e-11,73;UBERON:0003080,8.87e-11,40;UBERON:0003528,1.27e-10,29;UBERON:0002791,1.27e-10,29;UBERON:0001893,1.27e-10,29;UBERON:0002780,2.80e-10,39;UBERON:0001890,2.80e-10,39;UBERON:0006240,2.80e-10,39;UBERON:0001016,3.12e-10,75;UBERON:0004121,1.38e-09,95;UBERON:0000924,1.38e-09,95;UBERON:0006601,1.38e-09,95;UBERON:0010314,2.54e-09,92;UBERON:0000956,3.73e-08,21;UBERON:0001869,3.73e-08,21;UBERON:0000203,3.73e-08,21;UBERON:0002619,8.92e-07,17;UBERON:0002021,9.91e-07,10;UBERON:0000411,9.91e-07,10;UBERON:0001950,9.91e-07,10|phase1_expression=2.08193501236232,3.14077866875425,3.63999391511629,2.72217790176147,0.500895729946347,1.00727563147134,1.16806320297763,1.03298658753261,0,0,0,0.319088635981346,0.513602189793617,1.31130603628496,0.666219523631325,1.41732687172878,2.09868563438444,0.315462165358238,0.685572168028694,0.84877930359606,9.95006494767516,1.29078236561151,1.04479915655574,0.47997726838022,0.91763712426868,0.57423196411502,0.86152399231815,0.646413698057667,1.14014051673824,1.51218077855958,1.10865255327652,1.27006134691926,0.61506478758457,0,0.577703239502549,0.664938581433969,0.408338712524738,1.25559489221072,1.5626706890476,0.523523743973798,0,0.683045484958446,0.971020706062307,1.38486499773135,2.63580021170738,3.12029478674859,0,0.436050312760893,0.439372365468944,0.58328969722285,0.839918529752175,0,0.671130424230945,1.45072428402269,1.34437519656986,1.02903774414379,2.0057340795713,3.6097046459421,5.05791152148994,4.23192783417626,3.1691570175309,1.0165335962074,0,0.449949858640699,0,0.7104801149461,0.898800331555214,0,5.39185984004084,2.16009501330705,5.25812403378455,3.42781181284564,3.97563373712904,3.91970557487853,4.50473713785711,7.35375029288017,1.10115880999389,3.31987079021488,6.60508093001847,3.56092976871523,3.7509933876988,4.68822033501084,2.51264699101243,2.25105044012672,3.66715794664344,9.1334861496837,7.11858403995515,4.47358669980721,1.51452386666368,0.982430281388212,1.15945795480671,0.860423876981386,0,0.539703191637817,0.649776417447669,0.896053774194671,1.26399978118577,1.02258193546835,1.03914401841148,2.47337702157238,1.54927761754349,2.56652954828636,10.1922095882658,7.11066703153331,1.08245520505607,0.253359865475099,0,1.82694207550496,0.517875767294343,1.7813056687779,1.21439728736295,1.52232739156071,2.07553947530453,1.20578112442098,1.52865319276416,1.25666591329675,2.22475470960936,1.01219549843938,0.884610551949874,2.42650274921114,1.32504911076236,0.484875253135222,0,5.27005434620785,4.60782754989601,0.766371165625774,0.718890747035522,0,0.127070227073065,5.54225365797844,7.77751024791665,9.04711335212624,7.12679712788333,6.13717097592793,6.85700547046548,6.00292673350703,3.36069900706044,2.11491850037158,2.27450482590307,3.15662783829711,3.12289063110489,2.29902104433473,2.16074555766419,3.0140963567143,3.87808045162569,3.45907044769094,2.52994656311268,1.81092359517311,1.94011193639558,2.64748512234947,3.87092473160687,2.19195732427575,2.50242524303038,2.43776516565517,2.05782136407943,3.18454826909589,0.702213187313235,0.772043721344145,0.284163499395593,2.89976081549703,1.40715635988658,1.62055855314913,2.84093682702252,1.57411385397923,2.00547246753592,2.79040733700489,1.60964040839772,1.75148013550754,2.79751744852917,1.313339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| ||
|EntrezGene=140810 | |||
|HGNC= | |||
|MCL_coexpression_id=60 | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000141921_5end | |||
|description=CAGE_peak_3_at_Ttbk2_5end | |||
|id=chr2:120676164..120676181,- | |||
|ontology_enrichment_celltype=CL:0000117!4.58e-08!23;CL:0000337!4.58e-08!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.94e-08,23;CL:0000337,3.94e-08,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.49e-13!52;UBERON:0005068!1.49e-13!52;UBERON:0006241!1.49e-13!52;UBERON:0007135!1.49e-13!52;UBERON:0002020!8.44e-13!34;UBERON:0003056!1.39e-11!49;UBERON:0000955!1.65e-11!50;UBERON:0006238!1.65e-11!50;UBERON:0000033!1.72e-11!63;UBERON:0002346!3.50e-11!71;UBERON:0003075!3.50e-11!71;UBERON:0007284!3.50e-11!71;UBERON:0002616!4.74e-11!49;UBERON:0001017!9.66e-11!73;UBERON:0005743!9.66e-11!73;UBERON:0003080!1.20e-10!40;UBERON:0002791!1.78e-10!29;UBERON:0003528!1.78e-10!29;UBERON:0001893!1.78e-10!29;UBERON:0002780!3.75e-10!39;UBERON:0001890!3.75e-10!39;UBERON:0006240!3.75e-10!39;UBERON:0000073!4.56e-10!75;UBERON:0001016!4.56e-10!75;UBERON:0007811!1.48e-09!86;UBERON:0000153!1.53e-09!94;UBERON:0004121!3.56e-08!102;UBERON:0000924!3.56e-08!102;UBERON:0006601!3.56e-08!102;UBERON:0000956!4.94e-08!21;UBERON:0001869!4.94e-08!21;UBERON:0000203!4.94e-08!21;UBERON:0000468!9.12e-08!333 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,6.21e-14,52;UBERON:0005068,6.21e-14,52;UBERON:0006241,6.21e-14,52;UBERON:0007135,6.21e-14,52;UBERON:0000073,1.16e-13,54;UBERON:0002346,1.35e-13,64;UBERON:0003075,1.35e-13,64;UBERON:0007284,1.35e-13,64;UBERON:0002020,5.68e-13,34;UBERON:0003056,1.01e-11,49;UBERON:0000955,1.33e-11,47;UBERON:0006238,1.33e-11,47;UBERON:0010371,1.98e-11,73;UBERON:0002616,3.89e-11,46;UBERON:0001017,4.73e-11,73;UBERON:0003080,8.87e-11,40;UBERON:0003528,1.27e-10,29;UBERON:0002791,1.27e-10,29;UBERON:0001893,1.27e-10,29;UBERON:0002780,2.80e-10,39;UBERON:0001890,2.80e-10,39;UBERON:0006240,2.80e-10,39;UBERON:0001016,3.12e-10,75;UBERON:0004121,1.38e-09,95;UBERON:0000924,1.38e-09,95;UBERON:0006601,1.38e-09,95;UBERON:0010314,2.54e-09,92;UBERON:0000956,3.73e-08,21;UBERON:0001869,3.73e-08,21;UBERON:0000203,3.73e-08,21;UBERON:0002619,8.92e-07,17;UBERON:0002021,9.91e-07,10;UBERON:0000411,9.91e-07,10;UBERON:0001950,9.91e-07,10 | |||
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| |||
|short_description=p3@Ttbk2 | |||
}} |
Revision as of 21:49, 13 September 2013
Short description: | p3@Ttbk2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Ttbk2_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | 0bp_to_ENSMUST00000141921_5end |
EntrezGene: | Ttbk2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.94e-08 | 23 |
neuroblast (sensu Vertebrata) | 3.94e-08 | 23 |
Ontology term | p-value | n |
---|---|---|
neural tube | 6.21e-14 | 52 |
neural rod | 6.21e-14 | 52 |
future spinal cord | 6.21e-14 | 52 |
neural keel | 6.21e-14 | 52 |
regional part of nervous system | 1.16e-13 | 54 |
neurectoderm | 1.35e-13 | 64 |
neural plate | 1.35e-13 | 64 |
presumptive neural plate | 1.35e-13 | 64 |
gray matter | 5.68e-13 | 34 |
pre-chordal neural plate | 1.01e-11 | 49 |
brain | 1.33e-11 | 47 |
future brain | 1.33e-11 | 47 |
ecto-epithelium | 1.98e-11 | 73 |
regional part of brain | 3.89e-11 | 46 |
central nervous system | 4.73e-11 | 73 |
anterior neural tube | 8.87e-11 | 40 |
brain grey matter | 1.27e-10 | 29 |
regional part of telencephalon | 1.27e-10 | 29 |
telencephalon | 1.27e-10 | 29 |
regional part of forebrain | 2.80e-10 | 39 |
forebrain | 2.80e-10 | 39 |
future forebrain | 2.80e-10 | 39 |
nervous system | 3.12e-10 | 75 |
ectoderm-derived structure | 1.38e-09 | 95 |
ectoderm | 1.38e-09 | 95 |
presumptive ectoderm | 1.38e-09 | 95 |
structure with developmental contribution from neural crest | 2.54e-09 | 92 |
cerebral cortex | 3.73e-08 | 21 |
cerebral hemisphere | 3.73e-08 | 21 |
pallium | 3.73e-08 | 21 |
regional part of cerebral cortex | 8.92e-07 | 17 |
occipital lobe | 9.91e-07 | 10 |
visual cortex | 9.91e-07 | 10 |
neocortex | 9.91e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.