FFCP PHASE1:Hg19::chr6:41196052..41196063,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=285852|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=30807|TSSclassifier=S|UniProt=Q6UXN2,C9JF33|association_with_transcript=0bp_to_ENST00000341495,ENST00000445267,NM_198153,uc003oqc.2_5end|coexpression_cluster_id=C641|description=CAGE_peak_3_at_TREML4_5end|id=chr6:41196052..41196063,+|ontology_enrichment_celltype=CL:0000766!2.29e-22!76;CL:0000557!4.07e-21!71;CL:0002194!4.10e-21!63;CL:0000576!4.10e-21!63;CL:0000040!4.10e-21!63;CL:0000559!4.10e-21!63;CL:0002009!2.20e-20!65;CL:0000763!3.39e-20!112;CL:0000049!3.39e-20!112;CL:0000839!9.75e-19!70;CL:0002057!7.94e-15!42;CL:0000037!8.81e-15!172;CL:0000566!8.81e-15!172;CL:0002032!5.43e-14!165;CL:0000837!5.43e-14!165;CL:0000988!9.75e-14!182;CL:0000738!9.92e-14!140;CL:0000860!1.01e-13!45;CL:0002087!4.91e-13!119;CL:0002031!8.13e-11!124;CL:0002619!6.87e-10!3|ontology_enrichment_celltype_v019=CL:0000473;1.14e-28;39!CL:0000234;1.14e-28;39!CL:0000860;9.82e-25;33!CL:0002057;9.82e-25;33!CL:0000576;6.58e-22;48!CL:0000763;3.86e-15;100!CL:0002619;6.16e-14;3!CL:0000766;9.67e-14;69!CL:0002032;4.44e-11;1!CL:0000557;4.44e-11;1!CL:0002087;7.40e-10;104!CL:0000738;2.15e-09;136!CL:0000235;1.77e-07;6|ontology_enrichment_celltype_v019_2=CL:0000766,8.00e-33,72;CL:0000557,8.33e-31,67;CL:0002194,1.34e-30,59;CL:0000576,1.34e-30,59;CL:0000040,1.34e-30,59;CL:0000559,1.34e-30,59;CL:0002009,1.52e-29,61;CL:0000473,2.04e-28,48;CL:0000234,2.04e-28,48;CL:0000839,3.46e-27,66;CL:0000763,3.49e-27,108;CL:0000049,3.49e-27,108;CL:0000860,1.05e-22,42;CL:0002057,1.05e-22,42;CL:0000738,3.97e-21,136;CL:0000037,5.31e-21,168;CL:0000988,8.29e-20,177;CL:0002032,1.10e-19,161;CL:0000837,1.10e-19,161;CL:0002087,1.18e-19,115;CL:0002031,2.40e-16,120;CL:0002619,5.77e-14,3;CL:0000134,1.48e-08,354;CL:0002320,2.47e-08,361;CL:0000219,1.49e-07,386;CL:0000235,1.57e-07,6|ontology_enrichment_development_v019=CL:0002057;4.73e-19;42!CL:0000049;2.32e-11;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!5.47e-20!102;UBERON:0003061!5.47e-20!102;UBERON:0002371!2.05e-18!80;UBERON:0002193!6.97e-18!112;UBERON:0001474!6.36e-17!86;UBERON:0002405!2.26e-15!115;UBERON:0004765!5.81e-14!101;UBERON:0001434!5.81e-14!101;UBERON:0002106!1.46e-09!3;UBERON:0004854!1.46e-09!3;UBERON:0009034!1.46e-09!3;UBERON:0002095!1.46e-09!3;UBERON:0004782!1.46e-09!3;UBERON:0003281!1.46e-09!3;UBERON:0009664!1.46e-09!3;UBERON:0002296!1.46e-09!3;UBERON:0005602!1.46e-09!3;UBERON:0001179!1.46e-09!3;UBERON:0006293!1.46e-09!3;UBERON:0002171!7.59e-08!1;UBERON:0006518!7.59e-08!1;UBERON:0008949!7.59e-08!1;UBERON:0000101!7.59e-08!1;UBERON:0002167!7.59e-08!1;UBERON:0001154!8.69e-08!1;UBERON:0001153!8.69e-08!1;UBERON:0001882!1.14e-07!1;UBERON:0005403!1.14e-07!1;UBERON:0002363!1.21e-07!1;UBERON:0007647!1.21e-07!1;UBERON:0010115!1.21e-07!1;UBERON:0003081!1.67e-07!216;UBERON:0002204!3.09e-07!167|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,5.98e-27,76;UBERON:0001474,7.67e-25,82;UBERON:0002390,2.06e-23,98;UBERON:0003061,2.06e-23,98;UBERON:0004765,1.84e-22,90;UBERON:0002405,1.13e-21,93;UBERON:0002193,4.76e-21,108;UBERON:0001434,5.14e-20,100;UBERON:0002204,4.16e-11,167;UBERON:0003081,4.19e-10,203;UBERON:0002384,4.95e-08,371|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34349284543955,0,1.54545340580512,2.4717700592526,0,0,11.8538808821899,0,0,18.9876978932619,0,0,8.96338769915208,0,0,4.70605848856512,0,0,11.0190201253525,0,0,7.25672860410775,0,0,19.7342282267437,0,0,12.8136819280939,0,0,19.3727840842678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70763890732835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.930705723632056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96973604869918,0,2.52672975890838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29.0090859405225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.399158742865633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23087398947712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27746588066972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=285852 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30807 | |||
|TSSclassifier=S | |||
|UniProt=Q6UXN2,C9JF33 | |||
|association_with_transcript=0bp_to_ENST00000341495,ENST00000445267,NM_198153,uc003oqc.2_5end | |||
|coexpression_cluster_id=C641 | |||
|description=CAGE_peak_3_at_TREML4_5end | |||
|id=chr6:41196052..41196063,+ | |||
|ontology_enrichment_celltype=CL:0000766!2.29e-22!76;CL:0000557!4.07e-21!71;CL:0002194!4.10e-21!63;CL:0000576!4.10e-21!63;CL:0000040!4.10e-21!63;CL:0000559!4.10e-21!63;CL:0002009!2.20e-20!65;CL:0000763!3.39e-20!112;CL:0000049!3.39e-20!112;CL:0000839!9.75e-19!70;CL:0002057!7.94e-15!42;CL:0000037!8.81e-15!172;CL:0000566!8.81e-15!172;CL:0002032!5.43e-14!165;CL:0000837!5.43e-14!165;CL:0000988!9.75e-14!182;CL:0000738!9.92e-14!140;CL:0000860!1.01e-13!45;CL:0002087!4.91e-13!119;CL:0002031!8.13e-11!124;CL:0002619!6.87e-10!3 | |||
|ontology_enrichment_celltype_v019=CL:0000473;1.14e-28;39!CL:0000234;1.14e-28;39!CL:0000860;9.82e-25;33!CL:0002057;9.82e-25;33!CL:0000576;6.58e-22;48!CL:0000763;3.86e-15;100!CL:0002619;6.16e-14;3!CL:0000766;9.67e-14;69!CL:0002032;4.44e-11;1!CL:0000557;4.44e-11;1!CL:0002087;7.40e-10;104!CL:0000738;2.15e-09;136!CL:0000235;1.77e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,8.00e-33,72;CL:0000557,8.33e-31,67;CL:0002194,1.34e-30,59;CL:0000576,1.34e-30,59;CL:0000040,1.34e-30,59;CL:0000559,1.34e-30,59;CL:0002009,1.52e-29,61;CL:0000473,2.04e-28,48;CL:0000234,2.04e-28,48;CL:0000839,3.46e-27,66;CL:0000763,3.49e-27,108;CL:0000049,3.49e-27,108;CL:0000860,1.05e-22,42;CL:0002057,1.05e-22,42;CL:0000738,3.97e-21,136;CL:0000037,5.31e-21,168;CL:0000988,8.29e-20,177;CL:0002032,1.10e-19,161;CL:0000837,1.10e-19,161;CL:0002087,1.18e-19,115;CL:0002031,2.40e-16,120;CL:0002619,5.77e-14,3;CL:0000134,1.48e-08,354;CL:0002320,2.47e-08,361;CL:0000219,1.49e-07,386;CL:0000235,1.57e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002057;4.73e-19;42!CL:0000049;2.32e-11;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!5.47e-20!102;UBERON:0003061!5.47e-20!102;UBERON:0002371!2.05e-18!80;UBERON:0002193!6.97e-18!112;UBERON:0001474!6.36e-17!86;UBERON:0002405!2.26e-15!115;UBERON:0004765!5.81e-14!101;UBERON:0001434!5.81e-14!101;UBERON:0002106!1.46e-09!3;UBERON:0004854!1.46e-09!3;UBERON:0009034!1.46e-09!3;UBERON:0002095!1.46e-09!3;UBERON:0004782!1.46e-09!3;UBERON:0003281!1.46e-09!3;UBERON:0009664!1.46e-09!3;UBERON:0002296!1.46e-09!3;UBERON:0005602!1.46e-09!3;UBERON:0001179!1.46e-09!3;UBERON:0006293!1.46e-09!3;UBERON:0002171!7.59e-08!1;UBERON:0006518!7.59e-08!1;UBERON:0008949!7.59e-08!1;UBERON:0000101!7.59e-08!1;UBERON:0002167!7.59e-08!1;UBERON:0001154!8.69e-08!1;UBERON:0001153!8.69e-08!1;UBERON:0001882!1.14e-07!1;UBERON:0005403!1.14e-07!1;UBERON:0002363!1.21e-07!1;UBERON:0007647!1.21e-07!1;UBERON:0010115!1.21e-07!1;UBERON:0003081!1.67e-07!216;UBERON:0002204!3.09e-07!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,5.98e-27,76;UBERON:0001474,7.67e-25,82;UBERON:0002390,2.06e-23,98;UBERON:0003061,2.06e-23,98;UBERON:0004765,1.84e-22,90;UBERON:0002405,1.13e-21,93;UBERON:0002193,4.76e-21,108;UBERON:0001434,5.14e-20,100;UBERON:0002204,4.16e-11,167;UBERON:0003081,4.19e-10,203;UBERON:0002384,4.95e-08,371 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34349284543955,0,1.54545340580512,2.4717700592526,0,0,11.8538808821899,0,0,18.9876978932619,0,0,8.96338769915208,0,0,4.70605848856512,0,0,11.0190201253525,0,0,7.25672860410775,0,0,19.7342282267437,0,0,12.8136819280939,0,0,19.3727840842678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70763890732835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.930705723632056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96973604869918,0,2.52672975890838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29.0090859405225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.399158742865633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23087398947712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27746588066972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.657887425858975,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p3@TREML4 | |||
}} |
Revision as of 20:58, 13 September 2013
Short description: | p3@TREML4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_TREML4_5end |
Coexpression cluster: | C641_CD14_Neutrophils_Peripheral_Basophils_Whole_Monocytederived_Eosinophils |
Association with transcript: | 0bp_to_ENST00000341495, ENST00000445267, NM_198153, uc003oqc.2_5end |
EntrezGene: | TREML4 |
HGNC: | 30807 |
UniProt: | Q6UXN2C9JF33 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 8.00e-33 | 72 |
granulocyte monocyte progenitor cell | 8.33e-31 | 67 |
monopoietic cell | 1.34e-30 | 59 |
monocyte | 1.34e-30 | 59 |
monoblast | 1.34e-30 | 59 |
promonocyte | 1.34e-30 | 59 |
macrophage dendritic cell progenitor | 1.52e-29 | 61 |
defensive cell | 2.04e-28 | 48 |
phagocyte | 2.04e-28 | 48 |
myeloid lineage restricted progenitor cell | 3.46e-27 | 66 |
myeloid cell | 3.49e-27 | 108 |
common myeloid progenitor | 3.49e-27 | 108 |
classical monocyte | 1.05e-22 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.05e-22 | 42 |
leukocyte | 3.97e-21 | 136 |
hematopoietic stem cell | 5.31e-21 | 168 |
hematopoietic cell | 8.29e-20 | 177 |
hematopoietic oligopotent progenitor cell | 1.10e-19 | 161 |
hematopoietic multipotent progenitor cell | 1.10e-19 | 161 |
nongranular leukocyte | 1.18e-19 | 115 |
hematopoietic lineage restricted progenitor cell | 2.40e-16 | 120 |
adult endothelial progenitor cell | 5.77e-14 | 3 |
mesenchymal cell | 1.48e-08 | 354 |
connective tissue cell | 2.47e-08 | 361 |
motile cell | 1.49e-07 | 386 |
macrophage | 1.57e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 5.98e-27 | 76 |
bone element | 7.67e-25 | 82 |
hematopoietic system | 2.06e-23 | 98 |
blood island | 2.06e-23 | 98 |
skeletal element | 1.84e-22 | 90 |
immune system | 1.13e-21 | 93 |
hemolymphoid system | 4.76e-21 | 108 |
skeletal system | 5.14e-20 | 100 |
musculoskeletal system | 4.16e-11 | 167 |
lateral plate mesoderm | 4.19e-10 | 203 |
connective tissue | 4.95e-08 | 371 |
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