FFCP PHASE1:Mm9::chr1:75139402..75139411,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=227298|HGNC=|MCL_coexpression_id=60|UniProt=Q6NS82|association_with_transcript=42bp_to_ENSMUST00000060113,ENSMUST00000097694,NM_170755,uc007bnt.1,uc007bnu.1_5end|description=CAGE_peak_5_at_Fam134a_5end|id=chr1:75139402..75139411,+|ontology_enrichment_celltype=CL:0000221!1.13e-12!44;CL:0000133!1.13e-12!44;CL:0002319!1.86e-12!43;CL:0000540!7.57e-12!33;CL:0000047!7.57e-12!33;CL:0000031!7.57e-12!33;CL:0000404!7.57e-12!33;CL:0000055!1.00e-11!50;CL:0000117!4.45e-11!23;CL:0000337!4.45e-11!23;CL:0000393!2.22e-10!39;CL:0000211!2.22e-10!39;CL:0000723!6.28e-08!91;CL:0000048!6.28e-08!91;CL:0002321!2.79e-07!70;CL:0000220!2.79e-07!70;CL:0000034!3.10e-07!97|ontology_enrichment_celltype_v019_2=CL:0000221,6.52e-13,44;CL:0000133,6.52e-13,44;CL:0002319,1.13e-12,43;CL:0000540,1.98e-12,33;CL:0000047,1.98e-12,33;CL:0000031,1.98e-12,33;CL:0000404,1.98e-12,33;CL:0000117,1.55e-11,23;CL:0000337,1.55e-11,23;CL:0000393,8.65e-11,39;CL:0000211,8.65e-11,39;CL:0002321,1.07e-07,70;CL:0000723,1.97e-07,91;CL:0000048,1.97e-07,91;CL:0000034,6.79e-07,97|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.14e-27!73;UBERON:0005743!1.14e-27!73;UBERON:0000073!1.84e-27!75;UBERON:0001016!1.84e-27!75;UBERON:0004121!8.14e-22!102;UBERON:0000924!8.14e-22!102;UBERON:0006601!8.14e-22!102;UBERON:0001049!4.29e-21!52;UBERON:0005068!4.29e-21!52;UBERON:0006241!4.29e-21!52;UBERON:0007135!4.29e-21!52;UBERON:0002346!8.89e-20!71;UBERON:0003075!8.89e-20!71;UBERON:0007284!8.89e-20!71;UBERON:0000955!1.51e-19!50;UBERON:0006238!1.51e-19!50;UBERON:0002616!4.66e-19!49;UBERON:0000033!4.95e-18!63;UBERON:0003056!1.32e-15!49;UBERON:0003080!2.03e-15!40;UBERON:0002780!8.79e-15!39;UBERON:0001890!8.79e-15!39;UBERON:0006240!8.79e-15!39;UBERON:0002020!2.43e-14!34;UBERON:0002791!1.59e-11!29;UBERON:0003528!1.59e-11!29;UBERON:0001893!1.59e-11!29;UBERON:0000025!4.93e-09!114;UBERON:0004111!4.69e-08!122;UBERON:0007811!9.32e-08!86;UBERON:0000956!1.10e-07!21;UBERON:0001869!1.10e-07!21;UBERON:0000203!1.10e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.91e-29,73;UBERON:0001016,6.40e-29,75;UBERON:0000073,2.14e-23,54;UBERON:0004121,7.02e-23,95;UBERON:0000924,7.02e-23,95;UBERON:0006601,7.02e-23,95;UBERON:0002346,2.33e-22,64;UBERON:0003075,2.33e-22,64;UBERON:0007284,2.33e-22,64;UBERON:0001049,2.79e-22,52;UBERON:0005068,2.79e-22,52;UBERON:0006241,2.79e-22,52;UBERON:0007135,2.79e-22,52;UBERON:0000955,7.46e-19,47;UBERON:0006238,7.46e-19,47;UBERON:0002616,2.48e-18,46;UBERON:0010371,1.77e-17,73;UBERON:0003080,2.58e-16,40;UBERON:0003056,3.15e-16,49;UBERON:0002780,1.27e-15,39;UBERON:0001890,1.27e-15,39;UBERON:0006240,1.27e-15,39;UBERON:0002020,4.03e-15,34;UBERON:0003528,4.63e-12,29;UBERON:0002791,4.63e-12,29;UBERON:0001893,4.63e-12,29;UBERON:0010314,1.69e-11,92;UBERON:0000025,2.55e-08,114;UBERON:0000956,6.80e-08,21;UBERON:0001869,6.80e-08,21;UBERON:0000203,6.80e-08,21;UBERON:0004111,1.39e-07,122|phase1_expression=1.28119077683835,2.44282785347553,2.72999543633722,3.0246421130683,0,0.839396359559449,0.233612640595526,1.29123323441576,0.985521055061667,0.468129052643987,0.68487187290202,1.03703806693937,1.02720437958723,0.524522414513984,1.33243904726265,1.41732687172878,4.19737126876888,1.41957974411207,1.09691546884591,1.27316895539409,3.74190476664707,0.794327609607082,0.783599367416806,1.59992422793407,1.60586496747019,1.72269589234506,0,1.07735616342945,1.52018735565099,1.26015064879965,0.665191531965914,1.27006134691926,1.23012957516914,0,0.866554859253824,0.831173226792462,1.02084678131185,1.67412652294763,1.5626706890476,0.523523743973798,4.70585190424811,2.73218193983378,1.45653105909346,1.51076181570693,1.11514624341466,1.46837401729345,0.782391344348039,1.96222640742402,1.09843091367236,2.52758868796568,0.839918529752175,2.87505128729943,3.18786951509699,2.17608642603403,1.00828139742739,0.771778308107841,1.14613375975503,0.515672092277442,5.86717736492834,2.64495489636016,5.07065122804943,1.0165335962074,0.889294796111139,4.49949858640699,1.97773272513395,4.2628806896766,2.39680088414724,4.99483796918021,2.48855069540346,2.16009501330705,1.89292465216244,3.42781181284564,6.18431914664518,2.08234358665422,1.62937300731002,0.919218786610021,2.20231761998777,5.36286819957788,3.99376986466233,3.95658863190582,4.02545631850602,3.64639359389732,6.14202597803038,3.37657566019008,4.12555268997387,3.24091444021034,5.12538050876771,3.91438836233131,1.06016670666458,1.36028808192214,0.869593466105033,3.44169550792555,1.3599426674155,2.15881276655127,1.29955283489534,3.13618820968135,1.40444420131752,1.02258193546835,1.03914401841148,1.06001872353102,1.69012103732017,0,0,0,0.649473123033642,0.506719730950197,0.505524445014783,1.37020655662872,0.258937883647172,1.03909497345377,1.56136794089522,1.21786191324856,1.38369298353635,0.150722640552623,1.05829836422134,1.0053327306374,1.23597483867187,0.289198713839823,0,0.808834249737046,0.883366073841574,0.484875253135222,0,5.5628351432194,5.02672096352292,0.510914110417183,0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| ||
|EntrezGene=227298 | |||
|HGNC= | |||
|MCL_coexpression_id=60 | |||
|UniProt=Q6NS82 | |||
|association_with_transcript=42bp_to_ENSMUST00000060113,ENSMUST00000097694,NM_170755,uc007bnt.1,uc007bnu.1_5end | |||
|description=CAGE_peak_5_at_Fam134a_5end | |||
|id=chr1:75139402..75139411,+ | |||
|ontology_enrichment_celltype=CL:0000221!1.13e-12!44;CL:0000133!1.13e-12!44;CL:0002319!1.86e-12!43;CL:0000540!7.57e-12!33;CL:0000047!7.57e-12!33;CL:0000031!7.57e-12!33;CL:0000404!7.57e-12!33;CL:0000055!1.00e-11!50;CL:0000117!4.45e-11!23;CL:0000337!4.45e-11!23;CL:0000393!2.22e-10!39;CL:0000211!2.22e-10!39;CL:0000723!6.28e-08!91;CL:0000048!6.28e-08!91;CL:0002321!2.79e-07!70;CL:0000220!2.79e-07!70;CL:0000034!3.10e-07!97 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,6.52e-13,44;CL:0000133,6.52e-13,44;CL:0002319,1.13e-12,43;CL:0000540,1.98e-12,33;CL:0000047,1.98e-12,33;CL:0000031,1.98e-12,33;CL:0000404,1.98e-12,33;CL:0000117,1.55e-11,23;CL:0000337,1.55e-11,23;CL:0000393,8.65e-11,39;CL:0000211,8.65e-11,39;CL:0002321,1.07e-07,70;CL:0000723,1.97e-07,91;CL:0000048,1.97e-07,91;CL:0000034,6.79e-07,97 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.14e-27!73;UBERON:0005743!1.14e-27!73;UBERON:0000073!1.84e-27!75;UBERON:0001016!1.84e-27!75;UBERON:0004121!8.14e-22!102;UBERON:0000924!8.14e-22!102;UBERON:0006601!8.14e-22!102;UBERON:0001049!4.29e-21!52;UBERON:0005068!4.29e-21!52;UBERON:0006241!4.29e-21!52;UBERON:0007135!4.29e-21!52;UBERON:0002346!8.89e-20!71;UBERON:0003075!8.89e-20!71;UBERON:0007284!8.89e-20!71;UBERON:0000955!1.51e-19!50;UBERON:0006238!1.51e-19!50;UBERON:0002616!4.66e-19!49;UBERON:0000033!4.95e-18!63;UBERON:0003056!1.32e-15!49;UBERON:0003080!2.03e-15!40;UBERON:0002780!8.79e-15!39;UBERON:0001890!8.79e-15!39;UBERON:0006240!8.79e-15!39;UBERON:0002020!2.43e-14!34;UBERON:0002791!1.59e-11!29;UBERON:0003528!1.59e-11!29;UBERON:0001893!1.59e-11!29;UBERON:0000025!4.93e-09!114;UBERON:0004111!4.69e-08!122;UBERON:0007811!9.32e-08!86;UBERON:0000956!1.10e-07!21;UBERON:0001869!1.10e-07!21;UBERON:0000203!1.10e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.91e-29,73;UBERON:0001016,6.40e-29,75;UBERON:0000073,2.14e-23,54;UBERON:0004121,7.02e-23,95;UBERON:0000924,7.02e-23,95;UBERON:0006601,7.02e-23,95;UBERON:0002346,2.33e-22,64;UBERON:0003075,2.33e-22,64;UBERON:0007284,2.33e-22,64;UBERON:0001049,2.79e-22,52;UBERON:0005068,2.79e-22,52;UBERON:0006241,2.79e-22,52;UBERON:0007135,2.79e-22,52;UBERON:0000955,7.46e-19,47;UBERON:0006238,7.46e-19,47;UBERON:0002616,2.48e-18,46;UBERON:0010371,1.77e-17,73;UBERON:0003080,2.58e-16,40;UBERON:0003056,3.15e-16,49;UBERON:0002780,1.27e-15,39;UBERON:0001890,1.27e-15,39;UBERON:0006240,1.27e-15,39;UBERON:0002020,4.03e-15,34;UBERON:0003528,4.63e-12,29;UBERON:0002791,4.63e-12,29;UBERON:0001893,4.63e-12,29;UBERON:0010314,1.69e-11,92;UBERON:0000025,2.55e-08,114;UBERON:0000956,6.80e-08,21;UBERON:0001869,6.80e-08,21;UBERON:0000203,6.80e-08,21;UBERON:0004111,1.39e-07,122 | |||
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| |||
|short_description=p5@Fam134a | |||
}} |
Revision as of 20:58, 13 September 2013
Short description: | p5@Fam134a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Fam134a_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | 42bp_to_ENSMUST00000060113, ENSMUST00000097694, NM_170755, uc007bnt.1, uc007bnu.1_5end |
EntrezGene: | Fam134a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 6.52e-13 | 44 |
neurectodermal cell | 6.52e-13 | 44 |
neural cell | 1.13e-12 | 43 |
neuron | 1.98e-12 | 33 |
neuronal stem cell | 1.98e-12 | 33 |
neuroblast | 1.98e-12 | 33 |
electrically signaling cell | 1.98e-12 | 33 |
CNS neuron (sensu Vertebrata) | 1.55e-11 | 23 |
neuroblast (sensu Vertebrata) | 1.55e-11 | 23 |
electrically responsive cell | 8.65e-11 | 39 |
electrically active cell | 8.65e-11 | 39 |
embryonic cell | 1.07e-07 | 70 |
somatic stem cell | 1.97e-07 | 91 |
multi fate stem cell | 1.97e-07 | 91 |
stem cell | 6.79e-07 | 97 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 3.91e-29 | 73 |
nervous system | 6.40e-29 | 75 |
regional part of nervous system | 2.14e-23 | 54 |
ectoderm-derived structure | 7.02e-23 | 95 |
ectoderm | 7.02e-23 | 95 |
presumptive ectoderm | 7.02e-23 | 95 |
neurectoderm | 2.33e-22 | 64 |
neural plate | 2.33e-22 | 64 |
presumptive neural plate | 2.33e-22 | 64 |
neural tube | 2.79e-22 | 52 |
neural rod | 2.79e-22 | 52 |
future spinal cord | 2.79e-22 | 52 |
neural keel | 2.79e-22 | 52 |
brain | 7.46e-19 | 47 |
future brain | 7.46e-19 | 47 |
regional part of brain | 2.48e-18 | 46 |
ecto-epithelium | 1.77e-17 | 73 |
anterior neural tube | 2.58e-16 | 40 |
pre-chordal neural plate | 3.15e-16 | 49 |
regional part of forebrain | 1.27e-15 | 39 |
forebrain | 1.27e-15 | 39 |
future forebrain | 1.27e-15 | 39 |
gray matter | 4.03e-15 | 34 |
brain grey matter | 4.63e-12 | 29 |
regional part of telencephalon | 4.63e-12 | 29 |
telencephalon | 4.63e-12 | 29 |
structure with developmental contribution from neural crest | 1.69e-11 | 92 |
tube | 2.55e-08 | 114 |
cerebral cortex | 6.80e-08 | 21 |
cerebral hemisphere | 6.80e-08 | 21 |
pallium | 6.80e-08 | 21 |
anatomical conduit | 1.39e-07 | 122 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.