FFCP PHASE1:Mm9::chr1:38684431..38684450,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=16764|HGNC=|MCL_coexpression_id=2153|UniProt=P51827|association_with_transcript=-342bp_to_uc007asu.1_5end|description=CAGE_peak_3_at_Aff3_5end|id=chr1:38684431..38684450,-|ontology_enrichment_celltype=CL:0000540!6.46e-13!33;CL:0000047!6.46e-13!33;CL:0000031!6.46e-13!33;CL:0000404!6.46e-13!33;CL:0000117!1.91e-12!23;CL:0000337!1.91e-12!23;CL:0000393!4.85e-10!39;CL:0000211!4.85e-10!39;CL:0002319!1.25e-09!43;CL:0000221!1.87e-09!44;CL:0000133!1.87e-09!44;CL:0000055!3.23e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,8.15e-15,23;CL:0000337,8.15e-15,23;CL:0000540,3.47e-14,33;CL:0000047,3.47e-14,33;CL:0000031,3.47e-14,33;CL:0000404,3.47e-14,33;CL:0000393,8.25e-11,39;CL:0000211,8.25e-11,39;CL:0002319,4.17e-08,43;CL:0000221,1.12e-07,44;CL:0000133,1.12e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.53e-19!73;UBERON:0005743!2.53e-19!73;UBERON:0000073!5.09e-19!75;UBERON:0001016!5.09e-19!75;UBERON:0001049!2.84e-16!52;UBERON:0005068!2.84e-16!52;UBERON:0006241!2.84e-16!52;UBERON:0007135!2.84e-16!52;UBERON:0000955!3.04e-15!50;UBERON:0006238!3.04e-15!50;UBERON:0004121!4.41e-15!102;UBERON:0000924!4.41e-15!102;UBERON:0006601!4.41e-15!102;UBERON:0002616!5.11e-15!49;UBERON:0002346!6.60e-15!71;UBERON:0003075!6.60e-15!71;UBERON:0007284!6.60e-15!71;UBERON:0000033!8.45e-15!63;UBERON:0003056!1.55e-13!49;UBERON:0002020!3.94e-13!34;UBERON:0003080!1.33e-12!40;UBERON:0002780!5.59e-12!39;UBERON:0001890!5.59e-12!39;UBERON:0006240!5.59e-12!39;UBERON:0002791!2.03e-11!29;UBERON:0003528!2.03e-11!29;UBERON:0001893!2.03e-11!29;UBERON:0000153!1.44e-08!94;UBERON:0007811!9.53e-08!86;UBERON:0000956!1.66e-07!21;UBERON:0001869!1.66e-07!21;UBERON:0000203!1.66e-07!21;UBERON:0000468!8.10e-07!333|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.91e-19,73;UBERON:0001016,9.28e-18,75;UBERON:0000073,1.79e-17,54;UBERON:0002346,2.26e-17,64;UBERON:0003075,2.26e-17,64;UBERON:0007284,2.26e-17,64;UBERON:0001049,9.14e-17,52;UBERON:0005068,9.14e-17,52;UBERON:0006241,9.14e-17,52;UBERON:0007135,9.14e-17,52;UBERON:0004121,4.14e-15,95;UBERON:0000924,4.14e-15,95;UBERON:0006601,4.14e-15,95;UBERON:0003056,7.26e-15,49;UBERON:0002020,2.31e-14,34;UBERON:0000955,2.97e-14,47;UBERON:0006238,2.97e-14,47;UBERON:0010371,4.04e-14,73;UBERON:0002616,5.52e-14,46;UBERON:0003080,2.35e-13,40;UBERON:0002780,1.25e-12,39;UBERON:0001890,1.25e-12,39;UBERON:0006240,1.25e-12,39;UBERON:0003528,2.72e-12,29;UBERON:0002791,2.72e-12,29;UBERON:0001893,2.72e-12,29;UBERON:0010314,6.17e-09,92;UBERON:0000956,1.16e-07,21;UBERON:0001869,1.16e-07,21;UBERON:0000203,1.16e-07,21|phase1_expression=2.08193501236232,0,0,0,0,0,0,0,0.140788722151667,0.234064526321993,0.171217968225505,0,0,0,0,0,0,0,0,0,1.61582251287033,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.588231488031014,0.683045484958446,0,0.503587271902309,0,0,0.782391344348039,0.65407546914134,0.219686182734472,0.388859798148567,0.419959264876088,0,0,0,0,0.257259436035947,0.286533439938757,1.54701627683233,4.85559506063035,7.40587370980846,5.07065122804943,0,0.889294796111139,0,0,0,0.599200221036809,0.384218305321555,6.73982480005105,7.69533848490637,8.62332341540666,2.57085885963423,1.54607978666129,5.02212276781312,5.17565543498476,7.35375029288017,1.10115880999389,4.72443150915195,4.14737639791857,5.27545150920775,5.58074625974699,1.04182674111352,3.90856198601933,5.06486349028512,2.90316670775939,3.24091444021034,2.56269025438385,3.16879057903011,0.605809546665472,0.68014404096107,0,0,0,0,0,0,0,0,0,0,0.563373679106722,3.84979432242953,2.54805239706646,21.3320010945999,0,0,0,0.11418387971906,0,0.445326417194474,1.56136794089522,0.304465478312141,0,0.301445281105245,0.940709657085638,0,0,0.144599356919912,0,0.485300549842228,0,0.969750506270444,0,2.63502717310392,3.35114730901528,0.255457055208591,0.239630249011841,0,0.254140454146129,5.39246301857362,5.03250663100489,10.178002521142,3.30266208365325,2.04572365864264,2.49345653471472,2.43361894601636,3.56437773476107,0.497627882440372,0,0,1.43132487258974,1.14951052216736,1.0803727788321,1.9591626318643,3.74200745332303,2.43416068541215,3.5606655332697,1.81092359517311,3.66465587985832,4.9167580843633,2.99116911078713,0.876782929710299,1.11218899690239,1.39300866608867,0.61734640922383,5.17489093728082,0,0.51469581422943,0.568326998791185,1.24275463521301,0.234526059981096,1.08037236876609,0,0.983821158737019,0.925602677324269,1.39520366850245,0.536546802799238,0,0.658239399653922,0.164167464079095,0.0810688095458557,0.438599962275997,0.219550115291051,0.134206418760372,1.89260953707715,5.14523061896422,0,0,1.49301775374664,2.78684006232526,1.54640953586512,1.61346819698674,0,0.570676878337677,0,0.164698954724011,1.00534083520108,0.596869416123452,0.58489226135736,0,0.216138049874694,0.199141273254367,1.13800740571849,2.62771579002376,3.38123207019241,2.64746726198909,2.32742984601151,2.80543279561274,0.885311519739602,0,0.156998727841375,0.246794327843601,0,0.166845105716094,0.196558995113203,0.224862112384854,0.2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| ||
|EntrezGene=16764 | |||
|HGNC= | |||
|MCL_coexpression_id=2153 | |||
|UniProt=P51827 | |||
|association_with_transcript=-342bp_to_uc007asu.1_5end | |||
|description=CAGE_peak_3_at_Aff3_5end | |||
|id=chr1:38684431..38684450,- | |||
|ontology_enrichment_celltype=CL:0000540!6.46e-13!33;CL:0000047!6.46e-13!33;CL:0000031!6.46e-13!33;CL:0000404!6.46e-13!33;CL:0000117!1.91e-12!23;CL:0000337!1.91e-12!23;CL:0000393!4.85e-10!39;CL:0000211!4.85e-10!39;CL:0002319!1.25e-09!43;CL:0000221!1.87e-09!44;CL:0000133!1.87e-09!44;CL:0000055!3.23e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,8.15e-15,23;CL:0000337,8.15e-15,23;CL:0000540,3.47e-14,33;CL:0000047,3.47e-14,33;CL:0000031,3.47e-14,33;CL:0000404,3.47e-14,33;CL:0000393,8.25e-11,39;CL:0000211,8.25e-11,39;CL:0002319,4.17e-08,43;CL:0000221,1.12e-07,44;CL:0000133,1.12e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.53e-19!73;UBERON:0005743!2.53e-19!73;UBERON:0000073!5.09e-19!75;UBERON:0001016!5.09e-19!75;UBERON:0001049!2.84e-16!52;UBERON:0005068!2.84e-16!52;UBERON:0006241!2.84e-16!52;UBERON:0007135!2.84e-16!52;UBERON:0000955!3.04e-15!50;UBERON:0006238!3.04e-15!50;UBERON:0004121!4.41e-15!102;UBERON:0000924!4.41e-15!102;UBERON:0006601!4.41e-15!102;UBERON:0002616!5.11e-15!49;UBERON:0002346!6.60e-15!71;UBERON:0003075!6.60e-15!71;UBERON:0007284!6.60e-15!71;UBERON:0000033!8.45e-15!63;UBERON:0003056!1.55e-13!49;UBERON:0002020!3.94e-13!34;UBERON:0003080!1.33e-12!40;UBERON:0002780!5.59e-12!39;UBERON:0001890!5.59e-12!39;UBERON:0006240!5.59e-12!39;UBERON:0002791!2.03e-11!29;UBERON:0003528!2.03e-11!29;UBERON:0001893!2.03e-11!29;UBERON:0000153!1.44e-08!94;UBERON:0007811!9.53e-08!86;UBERON:0000956!1.66e-07!21;UBERON:0001869!1.66e-07!21;UBERON:0000203!1.66e-07!21;UBERON:0000468!8.10e-07!333 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.91e-19,73;UBERON:0001016,9.28e-18,75;UBERON:0000073,1.79e-17,54;UBERON:0002346,2.26e-17,64;UBERON:0003075,2.26e-17,64;UBERON:0007284,2.26e-17,64;UBERON:0001049,9.14e-17,52;UBERON:0005068,9.14e-17,52;UBERON:0006241,9.14e-17,52;UBERON:0007135,9.14e-17,52;UBERON:0004121,4.14e-15,95;UBERON:0000924,4.14e-15,95;UBERON:0006601,4.14e-15,95;UBERON:0003056,7.26e-15,49;UBERON:0002020,2.31e-14,34;UBERON:0000955,2.97e-14,47;UBERON:0006238,2.97e-14,47;UBERON:0010371,4.04e-14,73;UBERON:0002616,5.52e-14,46;UBERON:0003080,2.35e-13,40;UBERON:0002780,1.25e-12,39;UBERON:0001890,1.25e-12,39;UBERON:0006240,1.25e-12,39;UBERON:0003528,2.72e-12,29;UBERON:0002791,2.72e-12,29;UBERON:0001893,2.72e-12,29;UBERON:0010314,6.17e-09,92;UBERON:0000956,1.16e-07,21;UBERON:0001869,1.16e-07,21;UBERON:0000203,1.16e-07,21 | |||
|phase1_expression=2.08193501236232,0,0,0,0,0,0,0,0.140788722151667,0.234064526321993,0.171217968225505,0,0,0,0,0,0,0,0,0,1.61582251287033,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.588231488031014,0.683045484958446,0,0.503587271902309,0,0,0.782391344348039,0.65407546914134,0.219686182734472,0.388859798148567,0.419959264876088,0,0,0,0,0.257259436035947,0.286533439938757,1.54701627683233,4.85559506063035,7.40587370980846,5.07065122804943,0,0.889294796111139,0,0,0,0.599200221036809,0.384218305321555,6.73982480005105,7.69533848490637,8.62332341540666,2.57085885963423,1.54607978666129,5.02212276781312,5.17565543498476,7.35375029288017,1.10115880999389,4.72443150915195,4.14737639791857,5.27545150920775,5.58074625974699,1.04182674111352,3.90856198601933,5.06486349028512,2.90316670775939,3.24091444021034,2.56269025438385,3.16879057903011,0.605809546665472,0.68014404096107,0,0,0,0,0,0,0,0,0,0,0.563373679106722,3.84979432242953,2.54805239706646,21.3320010945999,0,0,0,0.11418387971906,0,0.445326417194474,1.56136794089522,0.304465478312141,0,0.301445281105245,0.940709657085638,0,0,0.144599356919912,0,0.485300549842228,0,0.969750506270444,0,2.63502717310392,3.35114730901528,0.255457055208591,0.239630249011841,0,0.254140454146129,5.39246301857362,5.03250663100489,10.178002521142,3.30266208365325,2.04572365864264,2.49345653471472,2.43361894601636,3.56437773476107,0.497627882440372,0,0,1.43132487258974,1.14951052216736,1.0803727788321,1.9591626318643,3.74200745332303,2.43416068541215,3.5606655332697,1.81092359517311,3.66465587985832,4.9167580843633,2.99116911078713,0.876782929710299,1.11218899690239,1.39300866608867,0.61734640922383,5.17489093728082,0,0.51469581422943,0.568326998791185,1.24275463521301,0.234526059981096,1.08037236876609,0,0.983821158737019,0.925602677324269,1.39520366850245,0.536546802799238,0,0.658239399653922,0.164167464079095,0.0810688095458557,0.438599962275997,0.219550115291051,0.134206418760372,1.89260953707715,5.14523061896422,0,0,1.49301775374664,2.78684006232526,1.54640953586512,1.61346819698674,0,0.570676878337677,0,0.164698954724011,1.00534083520108,0.596869416123452,0.58489226135736,0,0.216138049874694,0.199141273254367,1.13800740571849,2.62771579002376,3.38123207019241,2.64746726198909,2.32742984601151,2.80543279561274,0.885311519739602,0,0.156998727841375,0.246794327843601,0,0.166845105716094,0.196558995113203,0.224862112384854,0.202860121388503,0.482354319504834,0,0.575392274901621,0.324270453550071,0,0,0.372140947668503,0,0,0.179397413521912,0,2.40179147216586,1.89491411770485,3.25929952884052,1.69745085775188,0.938760993154008,1.84256883185997,2.14239276797412,2.34160377429359,2.99506773801763,2.43611158613652,3.98636921643718,4.58817281204066,1.38147985492716,1.59113964439663,0,0,0.983528546038072,0,2.24770825982909,3.5163505977661,1.14754461763673,0,1.57754109708128,0.780877488593277,0.861693590931196,1.19484398976276,2.00518806674155,3.67999490025482,1.21443210502468,1.46127928955656,1.97643888973262,1.92792789853084,1.13552068166615,1.6025904330053,3.58351310577867,0.824850614862677,0,0.485561272309963,0,0.188605079755898,0,0.307435147943927,0.775284879504663,0.363533729477506,0.356497378384721,0.632073515871632,0,0,0.340439605753788,1.8006109403131,1.94038025674132,1.92903331528433,1.95074257006501,1.42695054081656,1.15184314421485,0.304464949114599,0.23467170806371,0,0,1.48397627647332,0.322928853391811,0.784068024066026,0.477489376012546,0.328281799490123,0.291480836629851,3.70850604021019,0.170870880797853,1.857481811669,0.925972636848558,0,0.27338845544205,0,1.01987057996313,0.419854356970974,0.138199973804424,0.954670618015114,2.68885594543965,1.62655573701479,1.51207477150522,0.836353184057875,0.87345025498471,0.539457385539283,0.495920734352016,0.26175594198403,0,0,0,3.13984746692355,2.97825282822776,2.13896307178452,1.6790777052105,2.36538575687089,3.16864544343536,1.5624526181274,1.25831213310853,0.483168241652012,0.288030006257865,0,0.405450430580328,0.102710957164827,0,0.179026695667481,0,0.120195449519969,0.295379054349154,0.100966449948148,0.15241361331,0,0.194915761479505,0,0,0,0,0,0,0.386379188064381,0.563047426353546,0.36630324853453,0.428736758158132,0,2.82375921308533,2.30162618253588,4.01026859407578,0.515559547031063,2.05524755931193,1.5107877947794,3.37511250115903,0.45032120322422,4.07828168085784,3.62432218226274,2.59468368960442,3.59122386060928,2.56100408631201,0.729320151204882,2.51535795153579,1.47074806760011,1.55572709461131,1.44224540067226,1.28367683836726,2.77966932940177,1.52087579934144,2.26351609663291,1.21733959710847,1.40855335290712,2.1825478203133,1.90517476513229,2.0859178670074,2.50781986602817,1.23625770240992,3.38557516309114,2.05721551431249,1.77475806159337,1.66905332963125,2.32554266611726,1.69396884747595,1.60767754994185,2.37806364734604,3.41990624869196,1.62964936615034,1.68342681497322,2.37270036248348,1.47756723563345,2.04615521584845,1.54936841185966,0.771626443924566,1.24905288968973,2.33931608445408,0.644613162144895,0.95644166034421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| |||
|short_description=p3@Aff3 | |||
}} |
Revision as of 20:20, 13 September 2013
Short description: | p3@Aff3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Aff3_5end |
Coexpression cluster: | MCL_coexpression_mm9:2153 |
Association with transcript: | -342bp_to_uc007asu.1_5end |
EntrezGene: | Aff3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 8.15e-15 | 23 |
neuroblast (sensu Vertebrata) | 8.15e-15 | 23 |
neuron | 3.47e-14 | 33 |
neuronal stem cell | 3.47e-14 | 33 |
neuroblast | 3.47e-14 | 33 |
electrically signaling cell | 3.47e-14 | 33 |
electrically responsive cell | 8.25e-11 | 39 |
electrically active cell | 8.25e-11 | 39 |
neural cell | 4.17e-08 | 43 |
ectodermal cell | 1.12e-07 | 44 |
neurectodermal cell | 1.12e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 6.91e-19 | 73 |
nervous system | 9.28e-18 | 75 |
regional part of nervous system | 1.79e-17 | 54 |
neurectoderm | 2.26e-17 | 64 |
neural plate | 2.26e-17 | 64 |
presumptive neural plate | 2.26e-17 | 64 |
neural tube | 9.14e-17 | 52 |
neural rod | 9.14e-17 | 52 |
future spinal cord | 9.14e-17 | 52 |
neural keel | 9.14e-17 | 52 |
ectoderm-derived structure | 4.14e-15 | 95 |
ectoderm | 4.14e-15 | 95 |
presumptive ectoderm | 4.14e-15 | 95 |
pre-chordal neural plate | 7.26e-15 | 49 |
gray matter | 2.31e-14 | 34 |
brain | 2.97e-14 | 47 |
future brain | 2.97e-14 | 47 |
ecto-epithelium | 4.04e-14 | 73 |
regional part of brain | 5.52e-14 | 46 |
anterior neural tube | 2.35e-13 | 40 |
regional part of forebrain | 1.25e-12 | 39 |
forebrain | 1.25e-12 | 39 |
future forebrain | 1.25e-12 | 39 |
brain grey matter | 2.72e-12 | 29 |
regional part of telencephalon | 2.72e-12 | 29 |
telencephalon | 2.72e-12 | 29 |
structure with developmental contribution from neural crest | 6.17e-09 | 92 |
cerebral cortex | 1.16e-07 | 21 |
cerebral hemisphere | 1.16e-07 | 21 |
pallium | 1.16e-07 | 21 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.