FFCP PHASE1:Mm9::chr1:133904057..133904080,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=169|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr1:133904057..133904080,-|id=chr1:133904057..133904080,-|ontology_enrichment_celltype=CL:0000063!7.01e-13!66;CL:0000144!7.88e-13!121;CL:0000012!7.88e-13!121;CL:0002371!3.87e-11!118;CL:0000034!4.01e-10!97;CL:0000548!1.31e-09!115;CL:0000004!1.31e-09!115;CL:0000255!1.31e-09!115;CL:0000723!1.04e-08!91;CL:0000048!1.04e-08!91;CL:0000066!1.69e-08!25;CL:0002320!6.27e-08!46;CL:0000134!6.27e-08!46;CL:0000988!1.16e-07!32;CL:0002032!1.16e-07!32;CL:0000037!1.16e-07!32;CL:0000566!1.16e-07!32;CL:0000837!1.16e-07!32;CL:0000223!1.19e-07!20;CL:0000838!6.19e-07!12|ontology_enrichment_celltype_v019_2=CL:0000791,2.44e-15,9;CL:0000789,2.44e-15,9;CL:0002420,2.44e-15,9;CL:0002419,2.44e-15,9;CL:0000790,2.44e-15,9;CL:0000838,1.45e-14,12;CL:0000542,2.37e-13,13;CL:0000051,2.37e-13,13;CL:0000624,8.07e-13,8;CL:0000084,2.19e-12,11;CL:0000827,2.19e-12,11;CL:0000034,6.06e-12,97;CL:0002563,6.99e-11,9;CL:0002251,6.99e-11,9;CL:0000223,2.60e-10,20;CL:0000738,6.29e-10,17;CL:0002087,6.29e-10,17;CL:0002320,8.04e-10,46;CL:0000134,8.04e-10,46;CL:0000988,4.03e-09,32;CL:0002032,4.03e-09,32;CL:0000037,4.03e-09,32;CL:0000837,4.03e-09,32;CL:0000723,5.66e-09,91;CL:0000048,5.66e-09,91;CL:0002250,8.30e-09,3;CL:0002031,4.63e-08,25;CL:0000066,5.89e-08,25;CL:0000219,5.91e-08,54;CL:0000893,6.74e-08,6;CL:0002489,6.74e-08,6;CL:0000898,6.74e-08,6;CL:0000809,6.74e-08,6;CL:0000810,6.74e-08,6;CL:0000895,6.74e-08,6;CL:0000808,6.74e-08,6;CL:0000894,6.74e-08,6;CL:0000806,6.74e-08,6;CL:0000807,6.74e-08,6;CL:0000805,6.74e-08,6;CL:0002425,6.74e-08,6;CL:0002436,6.74e-08,6;CL:0002427,6.74e-08,6;CL:0002428,6.74e-08,6;CL:0002429,6.74e-08,6;CL:0002433,6.74e-08,6;CL:0002431,6.74e-08,6;CL:0002432,6.74e-08,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=DOID:0060100,2.43e-10,3;DOID:4045,2.43e-10,3;DOID:0050686,1.31e-08,6|ontology_enrichment_uberon=UBERON:0000490!1.47e-08!66;UBERON:0002384!6.27e-08!46|ontology_enrichment_uberon_v019_2=UBERON:0003350,6.99e-11,9;UBERON:0004808,6.99e-11,9;UBERON:0001277,6.99e-11,9;UBERON:0002384,8.04e-10,46;UBERON:0000485,8.38e-09,11;UBERON:0000490,3.37e-08,66;UBERON:0001242,2.31e-07,13;UBERON:0001262,2.31e-07,13;UBERON:0004786,2.31e-07,13|phase1_expression=0.160148847104794,0.348975407639361,1.36499771816861,3.62957053568196,3.50627010962443,0.16787927191189,0.700837921786577,2.58246646883153,2.25261955442667,2.10658073689794,0.171217968225505,0.159544317990673,3.76641605848653,1.48614684112296,0,0,0,0.946386496074713,0.822686601634433,0.84877930359606,0,0.297872853602656,0.261199789138935,0.159992422793407,0,0.57423196411502,0.430761996159075,0.215471232685889,0.760093677825496,0.252030129759931,0.221730510655305,2.54012269383853,0.61506478758457,0,2.02196133825892,1.32987716286794,1.63335485009895,5.4409111995798,3.906676722619,4.18818995179039,15.8822501768374,6.83045484958446,4.85510353031154,0.251793635951155,0.506884656097573,0.550640256485045,0.782391344348039,0,0,0.388859798148567,0.139986421625363,0,2.01339127269284,4.35217285206807,3.36093799142464,0.257259436035947,0,0,0,0,0,0,0,0,0,0.7104801149461,0,0,0,0.135005938331691,0,0,0.220868540951614,0,0.191690942036473,0,0,0,0.153606533256243,0.131886287730194,0.0914876436024097,0.52091337055676,0.279182999001381,0,0,0.294628585473668,0,0.186399445825301,0,0,3.76823835312181,0,0.679971333707751,3.2382191498269,2.59910566979068,0.448026887097336,0.140444420131752,0.170430322578058,0.259786004602869,0,0.14084341977668,0,0,0,0.649473123033642,0.506719730950197,0.505524445014783,0,0,0,0.173485326766136,0,0,0.150722640552623,0.117588707135705,0.125666591329675,0,0,0,0,0.220841518460394,0,0,0,0,0.255457055208591,1.67741174308288,4.79922184794726,0.889491589511453,0,0,0.251308704225729,0,0,0,0,0.203678727700633,0,0,0,0,0,0.360124259610698,0.30140963567143,0,0.2562274405697,0,0.258703370739016,0,0.189106080167819,0.175951124163949,0.219195732427575,0.278047249225598,0.696504333044333,0,0,0.702213187313235,0.51469581422943,0.568326998791185,0,0,0,0,0,0.154267112887378,0,0,0.116765342367169,0.16455984991348,0,0,0,0.219550115291051,0.268412837520744,0,0,0,0.264450566663544,0,0,0,0,0,0.190225626112559,0,0,0,0,0,0,0,0.398282546508734,0,0,0,0,0.193952487167626,0,0.126473074248515,0,0,0.246794327843601,0,0,0,0,0,0.241177159752417,0,0.287696137450811,0,0,0,0.372140947668503,0.312037673114561,0,0.179397413521912,0.482443521363367,0,0.189491411770485,0,0.169745085775188,0,0.167506257441816,0.238043640886014,0,0.157635144106191,0,0,0.327726629431476,0,0.144649058581512,0,0.54390568381871,0,0,0,0.117211686592203,0,0.252470927204373,0.315508219416257,0,0.215423397732799,0.477937595905104,0.445597348164788,0.849229592366497,0,0,0.395287777946524,0,0,0,0,0,0,0,0,0,0.295301892880773,0,0,0,0,0,0,0,0,0.36012218806262,0.129358683782755,0.214337035031592,0,0,0.164549020602121,1.2178597964584,0,0,0,0.16488625294148,0.161464426695906,0.0603129249281559,0.119372344003136,0.328281799490123,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| ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=169 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr1:133904057..133904080,- | |||
|id=chr1:133904057..133904080,- | |||
|ontology_enrichment_celltype=CL:0000063!7.01e-13!66;CL:0000144!7.88e-13!121;CL:0000012!7.88e-13!121;CL:0002371!3.87e-11!118;CL:0000034!4.01e-10!97;CL:0000548!1.31e-09!115;CL:0000004!1.31e-09!115;CL:0000255!1.31e-09!115;CL:0000723!1.04e-08!91;CL:0000048!1.04e-08!91;CL:0000066!1.69e-08!25;CL:0002320!6.27e-08!46;CL:0000134!6.27e-08!46;CL:0000988!1.16e-07!32;CL:0002032!1.16e-07!32;CL:0000037!1.16e-07!32;CL:0000566!1.16e-07!32;CL:0000837!1.16e-07!32;CL:0000223!1.19e-07!20;CL:0000838!6.19e-07!12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,2.44e-15,9;CL:0000789,2.44e-15,9;CL:0002420,2.44e-15,9;CL:0002419,2.44e-15,9;CL:0000790,2.44e-15,9;CL:0000838,1.45e-14,12;CL:0000542,2.37e-13,13;CL:0000051,2.37e-13,13;CL:0000624,8.07e-13,8;CL:0000084,2.19e-12,11;CL:0000827,2.19e-12,11;CL:0000034,6.06e-12,97;CL:0002563,6.99e-11,9;CL:0002251,6.99e-11,9;CL:0000223,2.60e-10,20;CL:0000738,6.29e-10,17;CL:0002087,6.29e-10,17;CL:0002320,8.04e-10,46;CL:0000134,8.04e-10,46;CL:0000988,4.03e-09,32;CL:0002032,4.03e-09,32;CL:0000037,4.03e-09,32;CL:0000837,4.03e-09,32;CL:0000723,5.66e-09,91;CL:0000048,5.66e-09,91;CL:0002250,8.30e-09,3;CL:0002031,4.63e-08,25;CL:0000066,5.89e-08,25;CL:0000219,5.91e-08,54;CL:0000893,6.74e-08,6;CL:0002489,6.74e-08,6;CL:0000898,6.74e-08,6;CL:0000809,6.74e-08,6;CL:0000810,6.74e-08,6;CL:0000895,6.74e-08,6;CL:0000808,6.74e-08,6;CL:0000894,6.74e-08,6;CL:0000806,6.74e-08,6;CL:0000807,6.74e-08,6;CL:0000805,6.74e-08,6;CL:0002425,6.74e-08,6;CL:0002436,6.74e-08,6;CL:0002427,6.74e-08,6;CL:0002428,6.74e-08,6;CL:0002429,6.74e-08,6;CL:0002433,6.74e-08,6;CL:0002431,6.74e-08,6;CL:0002432,6.74e-08,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2=DOID:0060100,2.43e-10,3;DOID:4045,2.43e-10,3;DOID:0050686,1.31e-08,6 | |||
|ontology_enrichment_uberon=UBERON:0000490!1.47e-08!66;UBERON:0002384!6.27e-08!46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003350,6.99e-11,9;UBERON:0004808,6.99e-11,9;UBERON:0001277,6.99e-11,9;UBERON:0002384,8.04e-10,46;UBERON:0000485,8.38e-09,11;UBERON:0000490,3.37e-08,66;UBERON:0001242,2.31e-07,13;UBERON:0001262,2.31e-07,13;UBERON:0004786,2.31e-07,13 | |||
|phase1_expression=0.160148847104794,0.348975407639361,1.36499771816861,3.62957053568196,3.50627010962443,0.16787927191189,0.700837921786577,2.58246646883153,2.25261955442667,2.10658073689794,0.171217968225505,0.159544317990673,3.76641605848653,1.48614684112296,0,0,0,0.946386496074713,0.822686601634433,0.84877930359606,0,0.297872853602656,0.261199789138935,0.159992422793407,0,0.57423196411502,0.430761996159075,0.215471232685889,0.760093677825496,0.252030129759931,0.221730510655305,2.54012269383853,0.61506478758457,0,2.02196133825892,1.32987716286794,1.63335485009895,5.4409111995798,3.906676722619,4.18818995179039,15.8822501768374,6.83045484958446,4.85510353031154,0.251793635951155,0.506884656097573,0.550640256485045,0.782391344348039,0,0,0.388859798148567,0.139986421625363,0,2.01339127269284,4.35217285206807,3.36093799142464,0.257259436035947,0,0,0,0,0,0,0,0,0,0.7104801149461,0,0,0,0.135005938331691,0,0,0.220868540951614,0,0.191690942036473,0,0,0,0.153606533256243,0.131886287730194,0.0914876436024097,0.52091337055676,0.279182999001381,0,0,0.294628585473668,0,0.186399445825301,0,0,3.76823835312181,0,0.679971333707751,3.2382191498269,2.59910566979068,0.448026887097336,0.140444420131752,0.170430322578058,0.259786004602869,0,0.14084341977668,0,0,0,0.649473123033642,0.506719730950197,0.505524445014783,0,0,0,0.173485326766136,0,0,0.150722640552623,0.117588707135705,0.125666591329675,0,0,0,0,0.220841518460394,0,0,0,0,0.255457055208591,1.67741174308288,4.79922184794726,0.889491589511453,0,0,0.251308704225729,0,0,0,0,0.203678727700633,0,0,0,0,0,0.360124259610698,0.30140963567143,0,0.2562274405697,0,0.258703370739016,0,0.189106080167819,0.175951124163949,0.219195732427575,0.278047249225598,0.696504333044333,0,0,0.702213187313235,0.51469581422943,0.568326998791185,0,0,0,0,0,0.154267112887378,0,0,0.116765342367169,0.16455984991348,0,0,0,0.219550115291051,0.268412837520744,0,0,0,0.264450566663544,0,0,0,0,0,0.190225626112559,0,0,0,0,0,0,0,0.398282546508734,0,0,0,0,0.193952487167626,0,0.126473074248515,0,0,0.246794327843601,0,0,0,0,0,0.241177159752417,0,0.287696137450811,0,0,0,0.372140947668503,0.312037673114561,0,0.179397413521912,0.482443521363367,0,0.189491411770485,0,0.169745085775188,0,0.167506257441816,0.238043640886014,0,0.157635144106191,0,0,0.327726629431476,0,0.144649058581512,0,0.54390568381871,0,0,0,0.117211686592203,0,0.252470927204373,0.315508219416257,0,0.215423397732799,0.477937595905104,0.445597348164788,0.849229592366497,0,0,0.395287777946524,0,0,0,0,0,0,0,0,0,0.295301892880773,0,0,0,0,0,0,0,0,0.36012218806262,0.129358683782755,0.214337035031592,0,0,0.164549020602121,1.2178597964584,0,0,0,0.16488625294148,0.161464426695906,0.0603129249281559,0.119372344003136,0.328281799490123,0.291480836629851,0.18542530201051,0.170870880797853,0,0.370389054739423,0,0.136694227721025,0,8.32894306969891,10.636310376598,5.2515990045681,0,0,0,0,0.209088296014469,0,0,0,0,0,0,0,0,0,0.194451188344048,0.129159823477731,0,0,0,0.209718688851422,0,0,0.632022241256357,0,0,0.129920822977795,0.179026695667481,0.596044064343795,0.120195449519969,0.443068581523732,0.403865799792591,0.457240839929999,0.302478555410522,0.38983152295901,0.384847366561318,0.467507608726276,0,0.221985953374065,0.0897138566094757,0,0.19318959403219,0,0,0,0,0.564751842617067,0,0.572895513439397,0.171853182343688,0,0,0,0.45032120322422,0,0.51776031175182,0.103787347584177,0,0,0,0,0.183843508450014,0,0,0,0,0,0,0.0936415074698824,0,0.114870937911227,0,0,0,0.412085900803307,0,0,0,0,0.145346416632329,0,0.0846146078916765,0,0.263069711437843,0,0.561142271657738,0.118635018124174,0.29551344712669,0,0,0,0,0.467863216890817,0,0,0,0 | |||
|short_description=p@chr1:133904057..133904080,- | |||
}} |
Revision as of 18:49, 13 September 2013
Short description: | p@chr1:133904057..133904080, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:133904057..133904080, - |
Coexpression cluster: | MCL_coexpression_mm9:169 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelium of mucosa | 6.99e-11 | 9 |
gastrointestinal system epithelium | 6.99e-11 | 9 |
intestinal epithelium | 6.99e-11 | 9 |
connective tissue | 8.04e-10 | 46 |
simple columnar epithelium | 8.38e-09 | 11 |
unilaminar epithelium | 3.37e-08 | 66 |
intestinal mucosa | 2.31e-07 | 13 |
wall of intestine | 2.31e-07 | 13 |
gastrointestinal system mucosa | 2.31e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system cancer | 2.43e-10 | 3 |
muscle cancer | 2.43e-10 | 3 |
organ system cancer | 1.31e-08 | 6 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.