FFCP PHASE1:Mm9::chr1:132745623..132745656,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=430|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr1:132745623..132745656,+|id=chr1:132745623..132745656,+|ontology_enrichment_celltype=CL:0002563!1.14e-13!9;CL:0002251!1.14e-13!9;CL:0000066!1.25e-13!25;CL:0000223!1.30e-11!20;CL:0000239!4.39e-10!6;CL:0000677!4.39e-10!6;CL:0000212!4.39e-10!6;CL:0000584!4.39e-10!6;CL:0000075!1.67e-08!7;CL:0002076!2.09e-07!15|ontology_enrichment_celltype_v019_2=CL:0000066,4.37e-17,25;CL:0002563,1.32e-16,9;CL:0002251,1.32e-16,9;CL:0000223,4.95e-16,20;CL:0000239,6.41e-15,6;CL:0000677,6.41e-15,6;CL:0000584,6.41e-15,6;CL:0000075,1.07e-12,7;CL:0002076,1.84e-09,15;CL:0000182,7.85e-09,5|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!2.39e-23!15;UBERON:0001242!4.88e-20!13;UBERON:0000060!4.88e-20!13;UBERON:0001262!4.88e-20!13;UBERON:0004786!4.88e-20!13;UBERON:0000160!1.73e-18!43;UBERON:0001007!2.61e-16!128;UBERON:0001555!2.61e-16!128;UBERON:0007026!2.61e-16!128;UBERON:0004119!7.07e-16!130;UBERON:0000925!7.07e-16!130;UBERON:0006595!7.07e-16!130;UBERON:0004921!1.97e-14!126;UBERON:0004185!1.97e-14!126;UBERON:0003350!1.14e-13!9;UBERON:0004808!1.14e-13!9;UBERON:0001277!1.14e-13!9;UBERON:0004923!5.63e-13!24;UBERON:0005409!7.73e-13!59;UBERON:0000485!8.18e-11!11;UBERON:0003929!2.02e-09!55;UBERON:0002365!3.12e-09!25;UBERON:0002330!3.12e-09!25;UBERON:0009854!7.45e-09!23;UBERON:0009856!7.45e-09!23;UBERON:0002107!7.46e-08!22;UBERON:0007499!7.46e-08!22;UBERON:0006925!7.46e-08!22;UBERON:0009497!7.46e-08!22;UBERON:0000015!7.46e-08!22;UBERON:0002423!7.46e-08!22;UBERON:0006235!7.46e-08!22;UBERON:0008835!7.46e-08!22;UBERON:0003894!7.46e-08!22;UBERON:0004161!7.46e-08!22;UBERON:0008836!7.46e-08!22;UBERON:0005911!8.78e-08!69;UBERON:0000490!6.64e-07!66|ontology_enrichment_uberon_v019_2=UBERON:0000344,1.52e-31,15;UBERON:0000160,4.73e-30,31;UBERON:0001242,2.06e-26,13;UBERON:0001262,2.06e-26,13;UBERON:0004786,2.06e-26,13;UBERON:0005409,2.15e-20,47;UBERON:0004923,1.53e-18,24;UBERON:0003350,1.32e-16,9;UBERON:0004808,1.32e-16,9;UBERON:0001277,1.32e-16,9;UBERON:0001007,1.24e-14,116;UBERON:0001555,1.24e-14,116;UBERON:0007026,1.24e-14,116;UBERON:0004119,2.81e-14,118;UBERON:0000925,2.81e-14,118;UBERON:0006595,2.81e-14,118;UBERON:0000485,2.34e-13,11;UBERON:0004921,2.31e-12,114;UBERON:0002108,3.41e-11,4;UBERON:0000331,9.35e-09,3;UBERON:0002116,9.35e-09,3;UBERON:0001204,9.35e-09,3;UBERON:0001168,9.35e-09,3;UBERON:0003929,3.91e-07,55|phase1_expression=0,2.09385244583617,2.27499619694768,7.56160528267075,3.50627010962443,1.00727563147134,2.56973904655078,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425216450755349,0,0,8.15961356246374,4.35877634027623,1.14846392823004,0.86152399231815,4.95583835177545,12.5415456841207,6.30075324399827,1.10865255327652,0,0,0,0.577703239502549,1.16364251750945,1.42918549383658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860423876981386,4.0798280022465,4.85732872474035,3.24888208723835,3.58421509677868,1.68533304158102,0,0,0,0,0,0,0,0,0,0,1.94112595522402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86391761218122,0,0,7.66371165625774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.2167513193519,2.3800550999719,0,0,0,0.201683524623343,0,0,5.21981967698963,0.164698954724011,0.251335208800269,0,0.58489226135736,6.29173586057955,8.86166004486246,3.78368419183298,0,0,0,0,0,0,0,0,0.156998727841375,0,1.77871576252289,0,0,0,0,0,0,0,0,0.274561413188081,1.43768206527355,0.372140947668503,0,0.505157755894224,0.358794827043824,1.92977408545347,0,0,0,0,0,0,0,0,0.157635144106191,0,0,0,0.172684981865896,0,0,0,1.47529281905711,0.827810238914197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164970122972535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220528398054962,0,0,0,0,0,4.37221254944776,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.6292192521702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974578807397524,0,0,0.226730383615211,0,0,0,0,0.375364950902364,0.915758121336325,0.643105137237198,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177475806159338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr1:132745623..132745656,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=430 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr1:132745623..132745656,+ | |||
|id=chr1:132745623..132745656,+ | |||
|ontology_enrichment_celltype=CL:0002563!1.14e-13!9;CL:0002251!1.14e-13!9;CL:0000066!1.25e-13!25;CL:0000223!1.30e-11!20;CL:0000239!4.39e-10!6;CL:0000677!4.39e-10!6;CL:0000212!4.39e-10!6;CL:0000584!4.39e-10!6;CL:0000075!1.67e-08!7;CL:0002076!2.09e-07!15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.37e-17,25;CL:0002563,1.32e-16,9;CL:0002251,1.32e-16,9;CL:0000223,4.95e-16,20;CL:0000239,6.41e-15,6;CL:0000677,6.41e-15,6;CL:0000584,6.41e-15,6;CL:0000075,1.07e-12,7;CL:0002076,1.84e-09,15;CL:0000182,7.85e-09,5 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!2.39e-23!15;UBERON:0001242!4.88e-20!13;UBERON:0000060!4.88e-20!13;UBERON:0001262!4.88e-20!13;UBERON:0004786!4.88e-20!13;UBERON:0000160!1.73e-18!43;UBERON:0001007!2.61e-16!128;UBERON:0001555!2.61e-16!128;UBERON:0007026!2.61e-16!128;UBERON:0004119!7.07e-16!130;UBERON:0000925!7.07e-16!130;UBERON:0006595!7.07e-16!130;UBERON:0004921!1.97e-14!126;UBERON:0004185!1.97e-14!126;UBERON:0003350!1.14e-13!9;UBERON:0004808!1.14e-13!9;UBERON:0001277!1.14e-13!9;UBERON:0004923!5.63e-13!24;UBERON:0005409!7.73e-13!59;UBERON:0000485!8.18e-11!11;UBERON:0003929!2.02e-09!55;UBERON:0002365!3.12e-09!25;UBERON:0002330!3.12e-09!25;UBERON:0009854!7.45e-09!23;UBERON:0009856!7.45e-09!23;UBERON:0002107!7.46e-08!22;UBERON:0007499!7.46e-08!22;UBERON:0006925!7.46e-08!22;UBERON:0009497!7.46e-08!22;UBERON:0000015!7.46e-08!22;UBERON:0002423!7.46e-08!22;UBERON:0006235!7.46e-08!22;UBERON:0008835!7.46e-08!22;UBERON:0003894!7.46e-08!22;UBERON:0004161!7.46e-08!22;UBERON:0008836!7.46e-08!22;UBERON:0005911!8.78e-08!69;UBERON:0000490!6.64e-07!66 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,1.52e-31,15;UBERON:0000160,4.73e-30,31;UBERON:0001242,2.06e-26,13;UBERON:0001262,2.06e-26,13;UBERON:0004786,2.06e-26,13;UBERON:0005409,2.15e-20,47;UBERON:0004923,1.53e-18,24;UBERON:0003350,1.32e-16,9;UBERON:0004808,1.32e-16,9;UBERON:0001277,1.32e-16,9;UBERON:0001007,1.24e-14,116;UBERON:0001555,1.24e-14,116;UBERON:0007026,1.24e-14,116;UBERON:0004119,2.81e-14,118;UBERON:0000925,2.81e-14,118;UBERON:0006595,2.81e-14,118;UBERON:0000485,2.34e-13,11;UBERON:0004921,2.31e-12,114;UBERON:0002108,3.41e-11,4;UBERON:0000331,9.35e-09,3;UBERON:0002116,9.35e-09,3;UBERON:0001204,9.35e-09,3;UBERON:0001168,9.35e-09,3;UBERON:0003929,3.91e-07,55 | |||
|phase1_expression=0,2.09385244583617,2.27499619694768,7.56160528267075,3.50627010962443,1.00727563147134,2.56973904655078,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425216450755349,0,0,8.15961356246374,4.35877634027623,1.14846392823004,0.86152399231815,4.95583835177545,12.5415456841207,6.30075324399827,1.10865255327652,0,0,0,0.577703239502549,1.16364251750945,1.42918549383658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860423876981386,4.0798280022465,4.85732872474035,3.24888208723835,3.58421509677868,1.68533304158102,0,0,0,0,0,0,0,0,0,0,1.94112595522402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86391761218122,0,0,7.66371165625774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.2167513193519,2.3800550999719,0,0,0,0.201683524623343,0,0,5.21981967698963,0.164698954724011,0.251335208800269,0,0.58489226135736,6.29173586057955,8.86166004486246,3.78368419183298,0,0,0,0,0,0,0,0,0.156998727841375,0,1.77871576252289,0,0,0,0,0,0,0,0,0.274561413188081,1.43768206527355,0.372140947668503,0,0.505157755894224,0.358794827043824,1.92977408545347,0,0,0,0,0,0,0,0,0.157635144106191,0,0,0,0.172684981865896,0,0,0,1.47529281905711,0.827810238914197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164970122972535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220528398054962,0,0,0,0,0,4.37221254944776,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.6292192521702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974578807397524,0,0,0.226730383615211,0,0,0,0,0.375364950902364,0.915758121336325,0.643105137237198,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177475806159338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr1:132745623..132745656,+ | |||
}} |
Revision as of 18:45, 13 September 2013
Short description: | p@chr1:132745623..132745656, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:132745623..132745656, + |
Coexpression cluster: | MCL_coexpression_mm9:430 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.37e-17 | 25 |
intestinal epithelial cell | 1.32e-16 | 9 |
epithelial cell of alimentary canal | 1.32e-16 | 9 |
endodermal cell | 4.95e-16 | 20 |
brush border epithelial cell | 6.41e-15 | 6 |
gut absorptive cell | 6.41e-15 | 6 |
enterocyte | 6.41e-15 | 6 |
columnar/cuboidal epithelial cell | 1.07e-12 | 7 |
endo-epithelial cell | 1.84e-09 | 15 |
hepatocyte | 7.85e-09 | 5 |
Ontology term | p-value | n |
---|---|---|
mucosa | 1.52e-31 | 15 |
intestine | 4.73e-30 | 31 |
intestinal mucosa | 2.06e-26 | 13 |
wall of intestine | 2.06e-26 | 13 |
gastrointestinal system mucosa | 2.06e-26 | 13 |
gastrointestinal system | 2.15e-20 | 47 |
organ component layer | 1.53e-18 | 24 |
epithelium of mucosa | 1.32e-16 | 9 |
gastrointestinal system epithelium | 1.32e-16 | 9 |
intestinal epithelium | 1.32e-16 | 9 |
digestive system | 1.24e-14 | 116 |
digestive tract | 1.24e-14 | 116 |
primitive gut | 1.24e-14 | 116 |
endoderm-derived structure | 2.81e-14 | 118 |
endoderm | 2.81e-14 | 118 |
presumptive endoderm | 2.81e-14 | 118 |
simple columnar epithelium | 2.34e-13 | 11 |
subdivision of digestive tract | 2.31e-12 | 114 |
small intestine | 3.41e-11 | 4 |
ileal mucosa | 9.35e-09 | 3 |
ileum | 9.35e-09 | 3 |
mucosa of small intestine | 9.35e-09 | 3 |
wall of small intestine | 9.35e-09 | 3 |
gut epithelium | 3.91e-07 | 55 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.