FFCP PHASE1:Mm9::chr19:4615518..4615539,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=225875|HGNC=|UniProt=Q80XU8|association_with_transcript=-16bp_to_ENSMUST00000053597,uc008gah.2_5end|description=CAGE_peak_5_at_Lrfn4_5end|id=chr19:4615518..4615539,-|ontology_enrichment_celltype=CL:0000055!1.15e-10!50;CL:0000221!1.29e-10!44;CL:0000133!1.29e-10!44;CL:0002319!3.21e-10!43;CL:0002321!1.19e-09!70;CL:0000220!1.19e-09!70;CL:0000393!3.61e-09!39;CL:0000211!3.61e-09!39;CL:0000540!5.60e-08!33;CL:0000047!5.60e-08!33;CL:0000031!5.60e-08!33;CL:0000404!5.60e-08!33|ontology_enrichment_celltype_v019_2=CL:0000221,1.26e-11,44;CL:0000133,1.26e-11,44;CL:0002321,3.10e-11,70;CL:0002319,3.39e-11,43;CL:0000393,5.97e-10,39;CL:0000211,5.97e-10,39;CL:0000540,8.83e-09,33;CL:0000047,8.83e-09,33;CL:0000031,8.83e-09,33;CL:0000404,8.83e-09,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!7.46e-15!75;UBERON:0001016!7.46e-15!75;UBERON:0004121!1.16e-14!102;UBERON:0000924!1.16e-14!102;UBERON:0006601!1.16e-14!102;UBERON:0001017!5.23e-14!73;UBERON:0005743!5.23e-14!73;UBERON:0002346!2.36e-10!71;UBERON:0003075!2.36e-10!71;UBERON:0007284!2.36e-10!71;UBERON:0002020!2.64e-10!34;UBERON:0001049!2.83e-10!52;UBERON:0005068!2.83e-10!52;UBERON:0006241!2.83e-10!52;UBERON:0007135!2.83e-10!52;UBERON:0003056!1.13e-09!49;UBERON:0002780!5.16e-09!39;UBERON:0001890!5.16e-09!39;UBERON:0006240!5.16e-09!39;UBERON:0003080!6.14e-09!40;UBERON:0000033!8.33e-09!63;UBERON:0002791!3.67e-08!29;UBERON:0003528!3.67e-08!29;UBERON:0001893!3.67e-08!29;UBERON:0000956!4.88e-08!21;UBERON:0001869!4.88e-08!21;UBERON:0000203!4.88e-08!21;UBERON:0000955!1.03e-07!50;UBERON:0006238!1.03e-07!50;UBERON:0002616!1.08e-07!49|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.70e-15,75;UBERON:0004121,5.11e-15,95;UBERON:0000924,5.11e-15,95;UBERON:0006601,5.11e-15,95;UBERON:0001017,3.66e-14,73;UBERON:0010371,9.46e-12,73;UBERON:0002346,3.29e-11,64;UBERON:0003075,3.29e-11,64;UBERON:0007284,3.29e-11,64;UBERON:0002020,7.49e-11,34;UBERON:0001049,5.51e-10,52;UBERON:0005068,5.51e-10,52;UBERON:0006241,5.51e-10,52;UBERON:0007135,5.51e-10,52;UBERON:0003056,1.38e-09,49;UBERON:0000073,1.59e-09,54;UBERON:0002780,3.22e-09,39;UBERON:0001890,3.22e-09,39;UBERON:0006240,3.22e-09,39;UBERON:0003080,3.83e-09,40;UBERON:0010314,1.05e-08,92;UBERON:0003528,1.48e-08,29;UBERON:0002791,1.48e-08,29;UBERON:0001893,1.48e-08,29;UBERON:0000956,2.75e-08,21;UBERON:0001869,2.75e-08,21;UBERON:0000203,2.75e-08,21;UBERON:0000955,4.11e-08,47;UBERON:0006238,4.11e-08,47;UBERON:0002616,4.26e-08,46|phase1_expression=2.08193501236232,0.348975407639361,0.454999239389536,0,0,2.18243053485457,1.40167584357315,0,0,0.234064526321993,0,0.159544317990673,0,0,0,0,0,0,0,0,0.595303031057488,0.695036658406197,0.783599367416806,0.95995453676044,1.14704640533585,0,0.430761996159075,0.430942465371778,0.760093677825496,1.76421090831952,3.32595765982957,1.27006134691926,3.69038872550742,0,1.73310971850765,1.16364251750945,3.06254034393554,0,0,0,0,0,0,3.02152363141385,2.83855407414641,2.20256102594018,1.56478268869608,4.36050312760893,1.97717564461025,1.55543919259427,1.81982348112971,2.87505128729943,0,0,0,4.3734104126111,2.29226751951005,0.515672092277442,6.67644320836673,1.5869729378161,3.1691570175309,3.38844532069132,0.889294796111139,1.3498495759221,1.97773272513395,1.4209602298922,1.49800055259202,4.2264013585371,4.04389488003063,4.99521971827255,3.78584930432488,3.14216082844184,3.75476519617743,3.79721477566358,4.12135525378416,1.83843757322004,0,1.14918604276669,1.68967186581868,3.95658863190582,4.48289453651807,6.77187381723788,0.558365998002762,0,1.06958773443767,3.53554302568401,2.84743361598206,3.16879057903011,3.18050011999373,3.02286240427142,0.869593466105033,0,0,0,0,0,0.421333260395256,6.47635225796619,7.01422212427746,6.36011234118612,3.09855523508697,6.41632387071589,7.64415719119937,7.11066703153331,3.24736561516821,3.29367825117628,3.0331466700887,0.11418387971906,0,0.29688427812965,1.90833859442749,1.21786191324856,1.15307748628029,0.301445281105245,1.76383060703557,0.628332956648377,0.988779870937496,0.289198713839823,0,1.7794353494215,0.220841518460394,1.45462575940567,1.86391761218122,0.878342391034642,1.8850203613211,1.02182822083437,0.958520996047362,0.599902730993408,0.381210681219194,1.49790639404823,1.37250180845588,6.03140890141749,3.12883776346098,4.34716277461562,0.83115217823824,2.75810147215188,1.73126918545538,0.622034853050465,0.505445516867349,0.631325567659422,2.21204753036596,2.06911893990126,1.44049703844279,1.9591626318643,3.53789795586905,2.17793324484245,2.52994656311268,0.776110112217047,2.37124792226126,3.02569728268511,2.28736461413134,2.41115305670332,1.94633074457919,1.74126083261083,1.64625709126355,1.19420560091096,0.702213187313235,0.772043721344145,0.852490498186778,1.86413195281952,0.938104239924385,1.08037236876609,1.65721314909647,1.57411385397923,1.07986979021165,1.62773761325285,0.536546802799238,0.934122738937356,1.31647879930784,1.14917224855367,0.486412857275134,1.60819986167866,1.97595103761946,1.34206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| ||
|EntrezGene=225875 | |||
|HGNC= | |||
|UniProt=Q80XU8 | |||
|association_with_transcript=-16bp_to_ENSMUST00000053597,uc008gah.2_5end | |||
|description=CAGE_peak_5_at_Lrfn4_5end | |||
|id=chr19:4615518..4615539,- | |||
|ontology_enrichment_celltype=CL:0000055!1.15e-10!50;CL:0000221!1.29e-10!44;CL:0000133!1.29e-10!44;CL:0002319!3.21e-10!43;CL:0002321!1.19e-09!70;CL:0000220!1.19e-09!70;CL:0000393!3.61e-09!39;CL:0000211!3.61e-09!39;CL:0000540!5.60e-08!33;CL:0000047!5.60e-08!33;CL:0000031!5.60e-08!33;CL:0000404!5.60e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.26e-11,44;CL:0000133,1.26e-11,44;CL:0002321,3.10e-11,70;CL:0002319,3.39e-11,43;CL:0000393,5.97e-10,39;CL:0000211,5.97e-10,39;CL:0000540,8.83e-09,33;CL:0000047,8.83e-09,33;CL:0000031,8.83e-09,33;CL:0000404,8.83e-09,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!7.46e-15!75;UBERON:0001016!7.46e-15!75;UBERON:0004121!1.16e-14!102;UBERON:0000924!1.16e-14!102;UBERON:0006601!1.16e-14!102;UBERON:0001017!5.23e-14!73;UBERON:0005743!5.23e-14!73;UBERON:0002346!2.36e-10!71;UBERON:0003075!2.36e-10!71;UBERON:0007284!2.36e-10!71;UBERON:0002020!2.64e-10!34;UBERON:0001049!2.83e-10!52;UBERON:0005068!2.83e-10!52;UBERON:0006241!2.83e-10!52;UBERON:0007135!2.83e-10!52;UBERON:0003056!1.13e-09!49;UBERON:0002780!5.16e-09!39;UBERON:0001890!5.16e-09!39;UBERON:0006240!5.16e-09!39;UBERON:0003080!6.14e-09!40;UBERON:0000033!8.33e-09!63;UBERON:0002791!3.67e-08!29;UBERON:0003528!3.67e-08!29;UBERON:0001893!3.67e-08!29;UBERON:0000956!4.88e-08!21;UBERON:0001869!4.88e-08!21;UBERON:0000203!4.88e-08!21;UBERON:0000955!1.03e-07!50;UBERON:0006238!1.03e-07!50;UBERON:0002616!1.08e-07!49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.70e-15,75;UBERON:0004121,5.11e-15,95;UBERON:0000924,5.11e-15,95;UBERON:0006601,5.11e-15,95;UBERON:0001017,3.66e-14,73;UBERON:0010371,9.46e-12,73;UBERON:0002346,3.29e-11,64;UBERON:0003075,3.29e-11,64;UBERON:0007284,3.29e-11,64;UBERON:0002020,7.49e-11,34;UBERON:0001049,5.51e-10,52;UBERON:0005068,5.51e-10,52;UBERON:0006241,5.51e-10,52;UBERON:0007135,5.51e-10,52;UBERON:0003056,1.38e-09,49;UBERON:0000073,1.59e-09,54;UBERON:0002780,3.22e-09,39;UBERON:0001890,3.22e-09,39;UBERON:0006240,3.22e-09,39;UBERON:0003080,3.83e-09,40;UBERON:0010314,1.05e-08,92;UBERON:0003528,1.48e-08,29;UBERON:0002791,1.48e-08,29;UBERON:0001893,1.48e-08,29;UBERON:0000956,2.75e-08,21;UBERON:0001869,2.75e-08,21;UBERON:0000203,2.75e-08,21;UBERON:0000955,4.11e-08,47;UBERON:0006238,4.11e-08,47;UBERON:0002616,4.26e-08,46 | |||
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| |||
|short_description=p5@Lrfn4 | |||
}} |
Revision as of 17:49, 13 September 2013
Short description: | p5@Lrfn4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Lrfn4_5end |
Coexpression cluster: | NA |
Association with transcript: | -16bp_to_ENSMUST00000053597, uc008gah.2_5end |
EntrezGene: | Lrfn4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.26e-11 | 44 |
neurectodermal cell | 1.26e-11 | 44 |
embryonic cell | 3.10e-11 | 70 |
neural cell | 3.39e-11 | 43 |
electrically responsive cell | 5.97e-10 | 39 |
electrically active cell | 5.97e-10 | 39 |
neuron | 8.83e-09 | 33 |
neuronal stem cell | 8.83e-09 | 33 |
neuroblast | 8.83e-09 | 33 |
electrically signaling cell | 8.83e-09 | 33 |
Ontology term | p-value | n |
---|---|---|
nervous system | 4.70e-15 | 75 |
ectoderm-derived structure | 5.11e-15 | 95 |
ectoderm | 5.11e-15 | 95 |
presumptive ectoderm | 5.11e-15 | 95 |
central nervous system | 3.66e-14 | 73 |
ecto-epithelium | 9.46e-12 | 73 |
neurectoderm | 3.29e-11 | 64 |
neural plate | 3.29e-11 | 64 |
presumptive neural plate | 3.29e-11 | 64 |
gray matter | 7.49e-11 | 34 |
neural tube | 5.51e-10 | 52 |
neural rod | 5.51e-10 | 52 |
future spinal cord | 5.51e-10 | 52 |
neural keel | 5.51e-10 | 52 |
pre-chordal neural plate | 1.38e-09 | 49 |
regional part of nervous system | 1.59e-09 | 54 |
regional part of forebrain | 3.22e-09 | 39 |
forebrain | 3.22e-09 | 39 |
future forebrain | 3.22e-09 | 39 |
anterior neural tube | 3.83e-09 | 40 |
structure with developmental contribution from neural crest | 1.05e-08 | 92 |
brain grey matter | 1.48e-08 | 29 |
regional part of telencephalon | 1.48e-08 | 29 |
telencephalon | 1.48e-08 | 29 |
cerebral cortex | 2.75e-08 | 21 |
cerebral hemisphere | 2.75e-08 | 21 |
pallium | 2.75e-08 | 21 |
brain | 4.11e-08 | 47 |
future brain | 4.11e-08 | 47 |
regional part of brain | 4.26e-08 | 46 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.