FFCP PHASE1:Mm9::chr19:4125820..4125831,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=11632|HGNC=|UniProt=O08915|association_with_transcript=0bp_to_NM_016666,uc008fyq.1_5end|description=CAGE_peak_6_at_Aip_5end|id=chr19:4125820..4125831,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!1.87e-08!52;UBERON:0005068!1.87e-08!52;UBERON:0006241!1.87e-08!52;UBERON:0007135!1.87e-08!52;UBERON:0002616!4.13e-08!49;UBERON:0000955!1.68e-07!50;UBERON:0006238!1.68e-07!50;UBERON:0002346!4.03e-07!71;UBERON:0003075!4.03e-07!71;UBERON:0007284!4.03e-07!71;UBERON:0001017!5.22e-07!73;UBERON:0005743!5.22e-07!73;UBERON:0000073!8.46e-07!75;UBERON:0001016!8.46e-07!75|ontology_enrichment_uberon_v019_2=UBERON:0000073,4.27e-15,54;UBERON:0001049,2.16e-13,52;UBERON:0005068,2.16e-13,52;UBERON:0006241,2.16e-13,52;UBERON:0007135,2.16e-13,52;UBERON:0002616,6.40e-12,46;UBERON:0000955,1.64e-11,47;UBERON:0006238,1.64e-11,47;UBERON:0001017,1.08e-10,73;UBERON:0002021,2.21e-10,10;UBERON:0000411,2.21e-10,10;UBERON:0001950,2.21e-10,10;UBERON:0001016,3.61e-10,75;UBERON:0002020,4.79e-10,34;UBERON:0003080,1.06e-09,40;UBERON:0003528,1.10e-09,29;UBERON:0002791,1.10e-09,29;UBERON:0001893,1.10e-09,29;UBERON:0002346,2.29e-09,64;UBERON:0003075,2.29e-09,64;UBERON:0007284,2.29e-09,64;UBERON:0002619,2.54e-09,17;UBERON:0002780,6.94e-09,39;UBERON:0001890,6.94e-09,39;UBERON:0006240,6.94e-09,39;UBERON:0000956,5.14e-08,21;UBERON:0001869,5.14e-08,21;UBERON:0000203,5.14e-08,21;UBERON:0010371,2.80e-07,73;UBERON:0003056,7.14e-07,49;UBERON:0010314,7.65e-07,92;UBERON:0004121,8.14e-07,95;UBERON:0000924,8.14e-07,95;UBERON:0006601,8.14e-07,95|phase1_expression=0.480446541314382,0.348975407639361,0,0.60492842261366,0,0.503637815735669,0.233612640595526,0,0,0,0,0,0,0,0.333109761815663,1.21485160433896,0.699561878128147,0.157731082679119,0.137114433605739,0,0.425216450755349,0.0992909512008853,0.522399578277871,0.47997726838022,0.22940928106717,0,0.430761996159075,0.646413698057667,0,0,0.221730510655305,0,0.61506478758457,0,0.288851619751275,0.498703936075477,0.204169356262369,1.67412652294763,0.7813353445238,3.66466620781659,5.29408339227913,2.73218193983378,3.88408282424923,1.1330713617802,0.506884656097573,0,1.56478268869608,1.52617609466313,1.09843091367236,0.58328969722285,0.699932108126813,0,0,0,0,1.28629718017973,1.14613375975503,1.03134418455488,0.809265843438391,0.528990979272033,0.633831403506179,0.677689064138264,0,0.899899717281399,0.988866362566974,3.5524005747305,0.599200221036809,0.384218305321555,0.103689612308478,0.135005938331691,0.420649922702764,2.28520787523043,1.98781686856452,0.489963196859816,0.287536413054709,1.83843757322004,3.30347642998166,1.91531007127782,1.68967186581868,0,0.365950574409639,0.52091337055676,3.35019598801657,3.93933827022176,1.68078072554491,0.589257170947335,0.711858403995515,0.745597783301202,0.37863096666592,0.453429360640713,0,0.860423876981386,0,0.539703191637817,0.649776417447669,0,0.983110940922263,0.852151612890289,0.519572009205738,1.06001872353102,0.281686839553361,1.28326477414318,0,0,0.216491041011214,0,0.505524445014783,0.5709193985953,0.258937883647172,0.742210695324124,0.867426633830679,0.913396434936424,1.15307748628029,0.452167921657868,0.352766121407114,0.628332956648377,0,0.86759614151947,1.76922110389975,0.323533699894818,0.883366073841574,0.969750506270444,3.72783522436244,0.292780797011547,0.83778682725382,0,0.599075622529601,0,0,2.09706895166752,1.83000241127451,0,1.04294592115366,1.79000820131231,1.66230435647648,1.78465389374533,1.12023300235348,0.497627882440372,0.252722758433675,0.420883711772948,0.390361328888111,0.459804208866946,0.360124259610698,0.60281927134286,0.544291993210623,0.384341160854549,0.281105173679186,0.517406741478031,0.431135985865684,0.189106080167819,0.703804496655795,0.219195732427575,0.278047249225598,0.696504333044333,0.823128545631774,1.19420560091096,0,0,0,0.207125772535502,0.234526059981096,0.180062061461015,0.23674473558521,0.196764231747404,0.462801338662135,0.930135779001631,1.07309360559848,0.350296027101508,0.658239399653922,0.32833492815819,0.324275238183423,0.730999937126662,0,0.805238512562231,1.89260953707715,0.308713837137853,0.330418782983798,0,0.426576501070468,0.232236671860439,0.257734922644187,0,0.667134131534611,0.570676878337677,0,0.823494773620054,0,0.397912944082302,0.38992817423824,0,1.29682829924817,0.398282546508734,0.189667900953082,0.571242563048644,0,0.610953983535943,0,0.280543279561274,0.252946148497029,0.590440591918409,0.31399745568275,0.246794327843601,0.889357881261447,0.500535317148282,0.786235980452812,0,0.405720242777006,0.72353147925725,0.25462585178142,0.863088412352432,0.324270453550071,0,0,0.372140947668503,0.312037673114561,0.757736633841335,0.358794827043824,0.482443521363367,0.739012760666419,0,0.325929952884052,0.678980343100753,0.469380496577004,0.837531287209079,0.952174563544055,0.195133647857799,0.157635144106191,0.44292937929755,0.318909537314974,0.491589944147214,0.6907399274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| ||
|EntrezGene=11632 | |||
|HGNC= | |||
|UniProt=O08915 | |||
|association_with_transcript=0bp_to_NM_016666,uc008fyq.1_5end | |||
|description=CAGE_peak_6_at_Aip_5end | |||
|id=chr19:4125820..4125831,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.87e-08!52;UBERON:0005068!1.87e-08!52;UBERON:0006241!1.87e-08!52;UBERON:0007135!1.87e-08!52;UBERON:0002616!4.13e-08!49;UBERON:0000955!1.68e-07!50;UBERON:0006238!1.68e-07!50;UBERON:0002346!4.03e-07!71;UBERON:0003075!4.03e-07!71;UBERON:0007284!4.03e-07!71;UBERON:0001017!5.22e-07!73;UBERON:0005743!5.22e-07!73;UBERON:0000073!8.46e-07!75;UBERON:0001016!8.46e-07!75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,4.27e-15,54;UBERON:0001049,2.16e-13,52;UBERON:0005068,2.16e-13,52;UBERON:0006241,2.16e-13,52;UBERON:0007135,2.16e-13,52;UBERON:0002616,6.40e-12,46;UBERON:0000955,1.64e-11,47;UBERON:0006238,1.64e-11,47;UBERON:0001017,1.08e-10,73;UBERON:0002021,2.21e-10,10;UBERON:0000411,2.21e-10,10;UBERON:0001950,2.21e-10,10;UBERON:0001016,3.61e-10,75;UBERON:0002020,4.79e-10,34;UBERON:0003080,1.06e-09,40;UBERON:0003528,1.10e-09,29;UBERON:0002791,1.10e-09,29;UBERON:0001893,1.10e-09,29;UBERON:0002346,2.29e-09,64;UBERON:0003075,2.29e-09,64;UBERON:0007284,2.29e-09,64;UBERON:0002619,2.54e-09,17;UBERON:0002780,6.94e-09,39;UBERON:0001890,6.94e-09,39;UBERON:0006240,6.94e-09,39;UBERON:0000956,5.14e-08,21;UBERON:0001869,5.14e-08,21;UBERON:0000203,5.14e-08,21;UBERON:0010371,2.80e-07,73;UBERON:0003056,7.14e-07,49;UBERON:0010314,7.65e-07,92;UBERON:0004121,8.14e-07,95;UBERON:0000924,8.14e-07,95;UBERON:0006601,8.14e-07,95 | |||
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| |||
|short_description=p6@Aip | |||
}} |
Revision as of 17:36, 13 September 2013
Short description: | p6@Aip |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_Aip_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_NM_016666, uc008fyq.1_5end |
EntrezGene: | Aip |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 4.27e-15 | 54 |
neural tube | 2.16e-13 | 52 |
neural rod | 2.16e-13 | 52 |
future spinal cord | 2.16e-13 | 52 |
neural keel | 2.16e-13 | 52 |
regional part of brain | 6.40e-12 | 46 |
brain | 1.64e-11 | 47 |
future brain | 1.64e-11 | 47 |
central nervous system | 1.08e-10 | 73 |
occipital lobe | 2.21e-10 | 10 |
visual cortex | 2.21e-10 | 10 |
neocortex | 2.21e-10 | 10 |
nervous system | 3.61e-10 | 75 |
gray matter | 4.79e-10 | 34 |
anterior neural tube | 1.06e-09 | 40 |
brain grey matter | 1.10e-09 | 29 |
regional part of telencephalon | 1.10e-09 | 29 |
telencephalon | 1.10e-09 | 29 |
neurectoderm | 2.29e-09 | 64 |
neural plate | 2.29e-09 | 64 |
presumptive neural plate | 2.29e-09 | 64 |
regional part of cerebral cortex | 2.54e-09 | 17 |
regional part of forebrain | 6.94e-09 | 39 |
forebrain | 6.94e-09 | 39 |
future forebrain | 6.94e-09 | 39 |
cerebral cortex | 5.14e-08 | 21 |
cerebral hemisphere | 5.14e-08 | 21 |
pallium | 5.14e-08 | 21 |
ecto-epithelium | 2.80e-07 | 73 |
pre-chordal neural plate | 7.14e-07 | 49 |
structure with developmental contribution from neural crest | 7.65e-07 | 92 |
ectoderm-derived structure | 8.14e-07 | 95 |
ectoderm | 8.14e-07 | 95 |
presumptive ectoderm | 8.14e-07 | 95 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.