FFCP PHASE1:Hg19::chr6:112575395..112575422,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3910|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6484|TSSclassifier=W|UniProt=E5RFQ2|association_with_transcript=264bp_to_ENST00000521398_5end|coexpression_cluster_id=C4546|description=CAGE_peak_7_at_LAMA4_5end|id=chr6:112575395..112575422,-|ontology_enrichment_celltype=CL:0000055!3.59e-17!180;CL:0000057!4.92e-12!75;CL:0000136!2.91e-10!15;CL:0002620!3.16e-09!23;CL:0000680!7.36e-07!57;CL:0000056!7.36e-07!57;CL:0000355!7.36e-07!57|ontology_enrichment_celltype_v019=CL:0000136;3.48e-19;13!CL:0002138;8.99e-08;6!CL:0002521;9.55e-08;3!CL:0002620;2.04e-07;23!CL:0002615;4.33e-07;3|ontology_enrichment_celltype_v019_2=CL:0000136,1.68e-21,15;CL:0000048,1.12e-08,427;CL:0000723,2.68e-08,433;CL:0000034,8.18e-08,441;CL:0002521,9.78e-08,3;CL:0002620,1.62e-07,23;CL:0005020,1.75e-07,6;CL:0002138,1.75e-07,6;CL:0005022,1.75e-07,6;CL:0000057,4.68e-07,76;CL:0002615,9.94e-07,3|ontology_enrichment_development_v019=CL:0005022;8.99e-08;6|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000475!5.18e-10!365;UBERON:0003102!9.24e-10!95;UBERON:0002049!2.71e-09!79;UBERON:0007798!2.71e-09!79;UBERON:0000477!7.17e-09!286;UBERON:0000055!2.98e-08!69;UBERON:0002199!4.34e-08!45;UBERON:0002416!4.34e-08!45;UBERON:0000914!6.13e-08!83;UBERON:0002329!6.13e-08!83;UBERON:0003077!6.13e-08!83;UBERON:0003059!6.13e-08!83;UBERON:0007282!6.13e-08!83;UBERON:0009618!6.13e-08!83;UBERON:0007285!6.13e-08!83;UBERON:0004111!7.82e-08!241;UBERON:0001009!1.69e-07!113;UBERON:0004535!3.29e-07!110;UBERON:0000468!3.81e-07!659;UBERON:0000467!6.12e-07!625;UBERON:0000480!8.07e-07!626|ontology_enrichment_uberon_v019=UBERON:0002190;9.55e-08;3!UBERON:0004457;2.25e-07;9!UBERON:0000042;2.25e-07;9|ontology_enrichment_uberon_v019_2=UBERON:0002190,9.78e-08,3;UBERON:0004797,1.18e-07,7;UBERON:0000055,4.72e-07,68;UBERON:0002199,8.34e-07,46;UBERON:0002416,8.34e-07,46|phase1_expression=0.54503513781167,6.20891519283851,4.22863212287913,1.0007329835313,5.81049422755474,0,17.7309914717817,4.42203911398782,11.2309820125931,0,0,0,0,1.11389717664042,0.994192127183747,0.672325146451775,1.20538905604795,1.46062018077475,0.975865597581014,0,0.204000691244253,0,0.286235987131057,0.273748850145768,0.627713197974014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0.670700859703636,0.255725123687061,1.0843174571537,1.00267582127178,0.434539556882471,0,0.486634870302636,0,0.221729397462564,0.263504357079378,0.392937226493138,0,0,0,0,0,0,0,0,0.993812036833525,0,0.347140501607594,0.56530794192401,0.419499436209906,0,0.208994966536811,1.29208379584664,2.49036383880697,1.00416183829401,0.402829317109147,0.760272105718513,0.24406205754817,0.367663080345869,0,0.446498641420399,0.22452937262617,0.225222960966644,1.53316637465883,0,0.732806975721629,0,0,0,0,0.379891534993739,3.83986624358335,3.72887606973458,1.77334191099179,0,0,0.24666754841716,2.48968828319813,0.269421344139376,0.490385709340376,0.302714855289863,1.15235184896,0.234321431833797,0.936480230490962,0,0.747243402759005,0.587172493218824,0.323745888736263,0.280901613404497,0.61246251376468,0.245668634623536,0.619954687054593,3.56400857184616,1.23633464639278,0.910161361938026,0.718618141816238,0,0.625592599359821,0.831192346452549,0.877955241761676,0.612975591598039,1.65261864797256,0,1.07633781413317,1.92201649936711,1.69545520927649,1.50045548042201,0.721367704669072,1.8034837803194,0.744467425326359,2.70042131586026,0.779496041289589,1.00973509697646,1.74894807420369,1.13152239773168,1.06502877754984,0.302256294682921,0.847802961552438,0,0,0,0,0,0,0.207322110030741,0,0,0,0.643240938192885,0,0.928735856063958,1.44375896333917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18157981336281,0,0,0.686271241194102,0,0,0,0,0,0,1.44331342025273,0,0.469634776943287,1.44366447761074,1.38895653772983,0.761016608938393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0.063497894292169,0.381988425558278,0,0,0.205654985406647,0.300343057843917,0.285826432630578,0.897048674762886,0.43596006883328,0.80672114403045,0.387815147273333,0,0.845302752556,0.531876233169741,0,0,0,0,2.00169191121407,0,0,0,0.710783897485092,0,1.20575750823834,1.74306691720059,0.99972991182057,0,0,0,0.239624855491583,0,0,0.144781306667579,1.02738161275192,0.179060963239896,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,1.47229790062968,0,0.542530047399471,1.03985430765404,0,0.473107245101804,0.35142424497814,1.20378439891088,0,0,0,0.184369168541703,0.695068915744663,0.195801157462741,0.343143423810856,0,0,0,0,0,0,0,1.38115775959256,0,1.53766979106841,0.511707249066704,0.482561763430822,0,0.462629081407967,0.532685175939381,1.06765302817952,0,0.464841513839837,0,0,0,0.459257792658427,0.546273504020151,1.83574180943194,0,0,0,0,0,0,0.340187410553031,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3910 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6484 | |||
|TSSclassifier=W | |||
|UniProt=E5RFQ2 | |||
|association_with_transcript=264bp_to_ENST00000521398_5end | |||
|coexpression_cluster_id=C4546 | |||
|description=CAGE_peak_7_at_LAMA4_5end | |||
|id=chr6:112575395..112575422,- | |||
|ontology_enrichment_celltype=CL:0000055!3.59e-17!180;CL:0000057!4.92e-12!75;CL:0000136!2.91e-10!15;CL:0002620!3.16e-09!23;CL:0000680!7.36e-07!57;CL:0000056!7.36e-07!57;CL:0000355!7.36e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0000136;3.48e-19;13!CL:0002138;8.99e-08;6!CL:0002521;9.55e-08;3!CL:0002620;2.04e-07;23!CL:0002615;4.33e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,1.68e-21,15;CL:0000048,1.12e-08,427;CL:0000723,2.68e-08,433;CL:0000034,8.18e-08,441;CL:0002521,9.78e-08,3;CL:0002620,1.62e-07,23;CL:0005020,1.75e-07,6;CL:0002138,1.75e-07,6;CL:0005022,1.75e-07,6;CL:0000057,4.68e-07,76;CL:0002615,9.94e-07,3 | |||
|ontology_enrichment_development_v019=CL:0005022;8.99e-08;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!5.18e-10!365;UBERON:0003102!9.24e-10!95;UBERON:0002049!2.71e-09!79;UBERON:0007798!2.71e-09!79;UBERON:0000477!7.17e-09!286;UBERON:0000055!2.98e-08!69;UBERON:0002199!4.34e-08!45;UBERON:0002416!4.34e-08!45;UBERON:0000914!6.13e-08!83;UBERON:0002329!6.13e-08!83;UBERON:0003077!6.13e-08!83;UBERON:0003059!6.13e-08!83;UBERON:0007282!6.13e-08!83;UBERON:0009618!6.13e-08!83;UBERON:0007285!6.13e-08!83;UBERON:0004111!7.82e-08!241;UBERON:0001009!1.69e-07!113;UBERON:0004535!3.29e-07!110;UBERON:0000468!3.81e-07!659;UBERON:0000467!6.12e-07!625;UBERON:0000480!8.07e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0002190;9.55e-08;3!UBERON:0004457;2.25e-07;9!UBERON:0000042;2.25e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002190,9.78e-08,3;UBERON:0004797,1.18e-07,7;UBERON:0000055,4.72e-07,68;UBERON:0002199,8.34e-07,46;UBERON:0002416,8.34e-07,46 | |||
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| |||
|short_description=p7@LAMA4 | |||
}} |
Revision as of 17:27, 13 September 2013
Short description: | p7@LAMA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_LAMA4_5end |
Coexpression cluster: | C4546_mature_Adipocyte_Fibroblast_mesenchymal_vagina_Smooth_normal |
Association with transcript: | 264bp_to_ENST00000521398_5end |
EntrezGene: | LAMA4 |
HGNC: | 6484 |
UniProt: | E5RFQ2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 1.68e-21 | 15 |
multi fate stem cell | 1.12e-08 | 427 |
somatic stem cell | 2.68e-08 | 433 |
stem cell | 8.18e-08 | 441 |
subcutaneous fat cell | 9.78e-08 | 3 |
skin fibroblast | 1.62e-07 | 23 |
lymphangioblast | 1.75e-07 | 6 |
endothelial cell of lymphatic vessel | 1.75e-07 | 6 |
vascular lymphangioblast | 1.75e-07 | 6 |
fibroblast | 4.68e-07 | 76 |
adipocyte of omentum tissue | 9.94e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
subcutaneous adipose tissue | 9.78e-08 | 3 |
blood vessel layer | 1.18e-07 | 7 |
vessel | 4.72e-07 | 68 |
integument | 8.34e-07 | 46 |
integumental system | 8.34e-07 | 46 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.