FFCP PHASE1:Hg19::chr6:106535598..106535637,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=639|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9346|TSSclassifier=W|UniProt=B2REA5|association_with_transcript=143bp_to_ENST00000424894_5end|coexpression_cluster_id=C7|description=CAGE_peak_7_at_PRDM1_5end|id=chr6:106535598..106535637,+|ontology_enrichment_celltype=CL:0002009!2.09e-44!65;CL:0002194!1.71e-42!63;CL:0000576!1.71e-42!63;CL:0000040!1.71e-42!63;CL:0000559!1.71e-42!63;CL:0000766!6.86e-42!76;CL:0000557!2.26e-38!71;CL:0000839!1.19e-35!70;CL:0002057!1.79e-35!42;CL:0000860!6.06e-33!45;CL:0000763!3.69e-26!112;CL:0000049!3.69e-26!112;CL:0000738!5.05e-24!140;CL:0002087!1.73e-19!119;CL:0002031!5.06e-17!124;CL:0000988!1.09e-15!182;CL:0000037!1.11e-14!172;CL:0000566!1.11e-14!172;CL:0002032!8.95e-14!165;CL:0000837!8.95e-14!165;CL:0000990!7.88e-09!8;CL:0002320!1.69e-08!365;CL:0000134!2.30e-08!358;CL:0000451!4.67e-08!10|ontology_enrichment_celltype_v019=CL:0000860;7.00e-76;33!CL:0002057;7.00e-76;33!CL:0000473;8.92e-67;39!CL:0000234;8.92e-67;39!CL:0000576;1.48e-51;48!CL:0000766;1.58e-34;69!CL:0000990;1.13e-18;8!CL:0000763;1.03e-16;100!CL:0000738;2.77e-16;136!CL:0000451;5.06e-15;10!CL:0000453;3.76e-14;5!CL:0002087;7.16e-14;104!CL:0000840;1.11e-11;5!CL:0002393;4.29e-11;6!CL:0002397;4.29e-11;6!CL:0000235;1.01e-07;6!CL:0000988;1.75e-07;177!CL:0000219;1.87e-07;193!CL:0001014;4.98e-07;2!CL:0001016;4.98e-07;2|ontology_enrichment_celltype_v019_2=CL:0002009,1.55e-95,61;CL:0000473,6.32e-91,48;CL:0000234,6.32e-91,48;CL:0002194,3.94e-90,59;CL:0000576,3.94e-90,59;CL:0000040,3.94e-90,59;CL:0000559,3.94e-90,59;CL:0000766,2.13e-86,72;CL:0000557,5.36e-86,67;CL:0000860,4.66e-85,42;CL:0002057,4.66e-85,42;CL:0000839,1.94e-79,66;CL:0000763,6.52e-67,108;CL:0000049,6.52e-67,108;CL:0000738,5.47e-57,136;CL:0002087,4.63e-47,115;CL:0002031,7.87e-45,120;CL:0000037,1.50e-43,168;CL:0002032,2.75e-42,161;CL:0000837,2.75e-42,161;CL:0000988,1.21e-40,177;CL:0000990,4.32e-19,8;CL:0000134,1.81e-18,354;CL:0002320,7.92e-18,361;CL:0000219,1.42e-15,386;CL:0000451,2.33e-15,10;CL:0000453,2.34e-14,5;CL:0000048,1.50e-13,427;CL:0000723,3.69e-13,433;CL:0000034,1.18e-12,441;CL:0000840,6.47e-12,5;CL:0001029,6.47e-12,5;CL:0000235,1.16e-07,6;CL:0002393,2.46e-07,9;CL:0002397,2.46e-07,9;CL:0001014,4.84e-07,2;CL:0001016,4.84e-07,2|ontology_enrichment_development_v019=CL:0002057;1.02e-63;42!CL:0000049;1.15e-20;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!2.63e-35!80;UBERON:0002390!3.64e-34!102;UBERON:0003061!3.64e-34!102;UBERON:0001474!7.26e-34!86;UBERON:0004765!1.88e-30!101;UBERON:0001434!1.88e-30!101;UBERON:0002193!3.34e-29!112;UBERON:0002405!8.90e-23!115;UBERON:0002204!4.45e-21!167;UBERON:0003081!5.22e-12!216;UBERON:0002384!8.76e-09!375;UBERON:0000062!1.42e-08!511;UBERON:0000926!4.00e-07!448;UBERON:0004120!4.00e-07!448;UBERON:0006603!4.00e-07!448;UBERON:0000480!6.79e-07!626|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,9.24e-78,76;UBERON:0001474,3.21e-71,82;UBERON:0004765,7.68e-64,90;UBERON:0002390,4.60e-63,98;UBERON:0003061,4.60e-63,98;UBERON:0002405,2.13e-61,93;UBERON:0001434,2.91e-56,100;UBERON:0002193,4.39e-56,108;UBERON:0002204,9.75e-32,167;UBERON:0003081,5.77e-24,203;UBERON:0002384,8.09e-18,371;UBERON:0000926,1.02e-15,315;UBERON:0004120,1.02e-15,315;UBERON:0006603,1.02e-15,315|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0.487932798790507,0,0,0,0,0.136874425072884,0.125542639594803,0,0.0821005894499457,0.0787107813136792,0.786728553697808,0.383829398097213,0.619264493264304,0,0,0,0,0,0,1.10799081706375,1.40381113229099,3.03815219002193,0.895661896959697,1.29557466407592,1.54545340580512,4.79814187972564,10.5805264232867,3.63876091781724,13.9457422143411,17.2690512969167,18.8920886246013,27.0430848782821,23.8229457072064,22.7022940693042,12.4108445065183,16.7826017731795,17.6054432572644,12.2357520702693,13.0994952027766,12.1350681600346,10.7129362329816,12.5162320559677,7.03270838378945,20.7806319117631,20.5447567350281,17.4752147718405,11.0279510678862,14.7520158419696,16.1933784738849,25.6273638561878,38.5897359630949,27.1486055881396,10.2917915447673,17.6773265274031,18.0383560841304,0.845021145247767,1.70083439972035,1.25795187305026,1.01095768031846,0.600707571366025,0.32145117339416,0,0.19891667719909,0.182664153764634,0,0,0,0,0,0,0,0,0.569212969109448,0,0,0,0,0,0,0,0,0,0,0,0,0.222820913770347,0,0.443067789167242,0.541607727530031,0.128091319725675,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795285947051099,0.486634870302636,0,0,0,0.523916301990851,0,0,1.9472843619281,2.26368658489047,1.59549552622638,0.476981248610684,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,3.87780264148325,0,0,0,0.132409180813219,0.286836620748814,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0.204154171254893,0,0.103325781175765,0,0.989067717114227,0,0,0.168336113954066,0.12511851987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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=639 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9346 | |||
|TSSclassifier=W | |||
|UniProt=B2REA5 | |||
|association_with_transcript=143bp_to_ENST00000424894_5end | |||
|coexpression_cluster_id=C7 | |||
|description=CAGE_peak_7_at_PRDM1_5end | |||
|id=chr6:106535598..106535637,+ | |||
|ontology_enrichment_celltype=CL:0002009!2.09e-44!65;CL:0002194!1.71e-42!63;CL:0000576!1.71e-42!63;CL:0000040!1.71e-42!63;CL:0000559!1.71e-42!63;CL:0000766!6.86e-42!76;CL:0000557!2.26e-38!71;CL:0000839!1.19e-35!70;CL:0002057!1.79e-35!42;CL:0000860!6.06e-33!45;CL:0000763!3.69e-26!112;CL:0000049!3.69e-26!112;CL:0000738!5.05e-24!140;CL:0002087!1.73e-19!119;CL:0002031!5.06e-17!124;CL:0000988!1.09e-15!182;CL:0000037!1.11e-14!172;CL:0000566!1.11e-14!172;CL:0002032!8.95e-14!165;CL:0000837!8.95e-14!165;CL:0000990!7.88e-09!8;CL:0002320!1.69e-08!365;CL:0000134!2.30e-08!358;CL:0000451!4.67e-08!10 | |||
|ontology_enrichment_celltype_v019=CL:0000860;7.00e-76;33!CL:0002057;7.00e-76;33!CL:0000473;8.92e-67;39!CL:0000234;8.92e-67;39!CL:0000576;1.48e-51;48!CL:0000766;1.58e-34;69!CL:0000990;1.13e-18;8!CL:0000763;1.03e-16;100!CL:0000738;2.77e-16;136!CL:0000451;5.06e-15;10!CL:0000453;3.76e-14;5!CL:0002087;7.16e-14;104!CL:0000840;1.11e-11;5!CL:0002393;4.29e-11;6!CL:0002397;4.29e-11;6!CL:0000235;1.01e-07;6!CL:0000988;1.75e-07;177!CL:0000219;1.87e-07;193!CL:0001014;4.98e-07;2!CL:0001016;4.98e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002009,1.55e-95,61;CL:0000473,6.32e-91,48;CL:0000234,6.32e-91,48;CL:0002194,3.94e-90,59;CL:0000576,3.94e-90,59;CL:0000040,3.94e-90,59;CL:0000559,3.94e-90,59;CL:0000766,2.13e-86,72;CL:0000557,5.36e-86,67;CL:0000860,4.66e-85,42;CL:0002057,4.66e-85,42;CL:0000839,1.94e-79,66;CL:0000763,6.52e-67,108;CL:0000049,6.52e-67,108;CL:0000738,5.47e-57,136;CL:0002087,4.63e-47,115;CL:0002031,7.87e-45,120;CL:0000037,1.50e-43,168;CL:0002032,2.75e-42,161;CL:0000837,2.75e-42,161;CL:0000988,1.21e-40,177;CL:0000990,4.32e-19,8;CL:0000134,1.81e-18,354;CL:0002320,7.92e-18,361;CL:0000219,1.42e-15,386;CL:0000451,2.33e-15,10;CL:0000453,2.34e-14,5;CL:0000048,1.50e-13,427;CL:0000723,3.69e-13,433;CL:0000034,1.18e-12,441;CL:0000840,6.47e-12,5;CL:0001029,6.47e-12,5;CL:0000235,1.16e-07,6;CL:0002393,2.46e-07,9;CL:0002397,2.46e-07,9;CL:0001014,4.84e-07,2;CL:0001016,4.84e-07,2 | |||
|ontology_enrichment_development_v019=CL:0002057;1.02e-63;42!CL:0000049;1.15e-20;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!2.63e-35!80;UBERON:0002390!3.64e-34!102;UBERON:0003061!3.64e-34!102;UBERON:0001474!7.26e-34!86;UBERON:0004765!1.88e-30!101;UBERON:0001434!1.88e-30!101;UBERON:0002193!3.34e-29!112;UBERON:0002405!8.90e-23!115;UBERON:0002204!4.45e-21!167;UBERON:0003081!5.22e-12!216;UBERON:0002384!8.76e-09!375;UBERON:0000062!1.42e-08!511;UBERON:0000926!4.00e-07!448;UBERON:0004120!4.00e-07!448;UBERON:0006603!4.00e-07!448;UBERON:0000480!6.79e-07!626 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,9.24e-78,76;UBERON:0001474,3.21e-71,82;UBERON:0004765,7.68e-64,90;UBERON:0002390,4.60e-63,98;UBERON:0003061,4.60e-63,98;UBERON:0002405,2.13e-61,93;UBERON:0001434,2.91e-56,100;UBERON:0002193,4.39e-56,108;UBERON:0002204,9.75e-32,167;UBERON:0003081,5.77e-24,203;UBERON:0002384,8.09e-18,371;UBERON:0000926,1.02e-15,315;UBERON:0004120,1.02e-15,315;UBERON:0006603,1.02e-15,315 | |||
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| |||
|short_description=p7@PRDM1 | |||
}} |
Revision as of 17:12, 13 September 2013
Short description: | p7@PRDM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_PRDM1_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | 143bp_to_ENST00000424894_5end |
EntrezGene: | PRDM1 |
HGNC: | 9346 |
UniProt: | B2REA5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow | 9.24e-78 | 76 |
bone element | 3.21e-71 | 82 |
skeletal element | 7.68e-64 | 90 |
hematopoietic system | 4.60e-63 | 98 |
blood island | 4.60e-63 | 98 |
immune system | 2.13e-61 | 93 |
skeletal system | 2.91e-56 | 100 |
hemolymphoid system | 4.39e-56 | 108 |
musculoskeletal system | 9.75e-32 | 167 |
lateral plate mesoderm | 5.77e-24 | 203 |
connective tissue | 8.09e-18 | 371 |
mesoderm | 1.02e-15 | 315 |
mesoderm-derived structure | 1.02e-15 | 315 |
presumptive mesoderm | 1.02e-15 | 315 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.