FFCP PHASE1:Hg19::chr5:82837460..82837472,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1462|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=2464|TSSclassifier=N|UniProt=|association_with_transcript=-294bp_to_ENST00000507162_5end|coexpression_cluster_id=C456|description=CAGE_peak_15_at_VCAN_5end|id=chr5:82837460..82837472,+|ontology_enrichment_celltype=CL:0000048!1.72e-15!430;CL:0000034!1.15e-14!444;CL:0000723!1.34e-14!436;CL:0002057!1.44e-14!42;CL:0000860!8.07e-13!45;CL:0000055!1.09e-12!180;CL:0000057!1.38e-11!75;CL:0002334!1.44e-10!12;CL:0002320!1.55e-09!365;CL:0000134!1.86e-09!358;CL:0002494!3.18e-08!16;CL:0000219!7.46e-08!390;CL:0002194!5.09e-07!63;CL:0000576!5.09e-07!63;CL:0000040!5.09e-07!63;CL:0000559!5.09e-07!63;CL:0002371!7.84e-07!591|ontology_enrichment_celltype_v019=CL:0002334;5.58e-15;12!CL:1000306;6.21e-13;4!CL:0002547;6.21e-13;4!CL:0000860;2.16e-12;33!CL:0002057;2.16e-12;33!CL:0000473;4.11e-10;39!CL:0000234;4.11e-10;39!CL:0000569;7.90e-08;4!CL:0000576;2.17e-07;48!CL:0002583;8.06e-07;2|ontology_enrichment_celltype_v019_2=CL:0002334,5.45e-15,12;CL:1000306,9.57e-13,4;CL:0002547,9.57e-13,4;CL:0000860,1.16e-12,42;CL:0002057,1.16e-12,42;CL:0000134,1.67e-11,354;CL:0000048,1.83e-11,427;CL:0000723,4.04e-11,433;CL:0002320,4.82e-11,361;CL:0000034,1.13e-10,441;CL:0000473,1.24e-10,48;CL:0000234,1.24e-10,48;CL:0000219,1.98e-09,386;CL:0000057,2.74e-08,76;CL:0002194,8.00e-08,59;CL:0000576,8.00e-08,59;CL:0000040,8.00e-08,59;CL:0000559,8.00e-08,59;CL:0000569,1.21e-07,4;CL:0000011,1.21e-07,4;CL:0002009,1.83e-07,61|ontology_enrichment_development_v019=CL:0002057;2.43e-09;42!CL:0000011;7.90e-08;4|ontology_enrichment_disease=DOID:2394!2.73e-12!14|ontology_enrichment_disease_v019=DOID:2394;7.93e-16;14!DOID:193;2.30e-08;29!DOID:120;2.19e-07;27|ontology_enrichment_disease_v019_2=DOID:2394,1.73e-16,14;DOID:193,1.16e-08,29;DOID:120,1.07e-07,27|ontology_enrichment_uberon=UBERON:0002204!1.33e-10!167;UBERON:0002384!1.72e-10!375;UBERON:0003081!7.22e-09!216;UBERON:0000948!2.95e-07!24;UBERON:0005498!2.95e-07!24;UBERON:0004140!2.95e-07!24;UBERON:0009881!2.95e-07!24;UBERON:0004141!2.95e-07!24;UBERON:0003084!2.95e-07!24;UBERON:0007005!2.95e-07!24;UBERON:0004139!2.95e-07!24;UBERON:0004291!2.95e-07!24;UBERON:0004573!5.51e-07!33;UBERON:0004571!5.51e-07!33|ontology_enrichment_uberon_v019=UBERON:0004797;6.21e-13;4!UBERON:0000415;6.21e-13;4!UBERON:0007240;6.21e-13;4!UBERON:0005742;6.21e-13;4!UBERON:0005734;6.21e-13;4!UBERON:0004664;6.21e-13;4!UBERON:0004663;6.21e-13;4!UBERON:0002118;1.33e-09;5!UBERON:0000992;1.04e-07;13!UBERON:0004909;8.06e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0000415,9.57e-13,4;UBERON:0007240,9.57e-13,4;UBERON:0005742,9.57e-13,4;UBERON:0005734,9.57e-13,4;UBERON:0004664,9.57e-13,4;UBERON:0004663,9.57e-13,4;UBERON:0002384,4.26e-11,371;UBERON:0002118,7.73e-10,5;UBERON:0000926,4.35e-09,315;UBERON:0004120,4.35e-09,315;UBERON:0006603,4.35e-09,315;UBERON:0000992,6.52e-08,13;UBERON:0003081,8.71e-08,203;UBERON:0004797,2.81e-07,7;UBERON:0004909,3.70e-07,2|phase1_expression=0.908391896352783,1.2846031433459,0.845726424575827,1.0007329835313,0.893922188854576,0.872338524100369,0,0,0,0,0,0,0,0.123766352960047,0.331397375727916,0.672325146451775,1.20538905604795,1.46062018077475,0.975865597581014,0,0,0,0.286235987131057,0.410623275218653,0.376627918784408,0,0,0,0.393364276848904,0,0.309632246632152,0,0,0,0,0,0,0.553995408531877,1.20326668482085,0,0,0,0,0.872389432677388,0,0.242584061187816,0.929716147622738,0.822335776043652,0.309706370895104,2.58923153089935,0.256160706529101,0.236482229888585,0.689491361473237,1.29096936716765,1.35426486594342,1.12945403725563,0.545812300115692,0,2.14258724659632,0,0.639337125799041,1.31940520074686,0.398927315243264,0.852449501065388,4.06292934080018,0,0,3.76872997885115,1.5644487552606,0.217188844705117,2.42159801053347,1.47311054395026,0.316462387440884,0.211255286311942,0,0.628975936525128,1.34794357375794,1.65194582125657,1.28580469357664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0.670700859703636,0.12786256184353,0,0,0.869079113764942,0,0.486634870302636,0.0945348171640679,1.55210578223795,0.702678285545008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,1.2663051166458,2.1185468930115,4.01571269048339,1.41867352879343,0.560677600142307,1.06748995729705,0.74000264525148,0,0.538842688278752,0.326923806226917,0,0,0,0,0,0.149448680551801,0,0,0,0,0.245668634623536,0.103325781175765,0,0.741800787835671,0,0,0,0.125118519871964,0,0,0.919463387397059,0.45071417671979,0.226864366320042,1.4351170855109,0.427114777637135,0.211931901159562,0.300091096084402,0.206105058476878,0,0,0.675105328965065,0.292311015483596,1.00973509697646,0.0920498986422993,0.161646056818812,0.355009592516614,0.10075209822764,0,0,0,0,0.121973706129595,0,0.348581828608555,0,0.252320850875628,0,0,3.21620469096443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.469634776943287,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1462 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2464 | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=-294bp_to_ENST00000507162_5end | |||
|coexpression_cluster_id=C456 | |||
|description=CAGE_peak_15_at_VCAN_5end | |||
|id=chr5:82837460..82837472,+ | |||
|ontology_enrichment_celltype=CL:0000048!1.72e-15!430;CL:0000034!1.15e-14!444;CL:0000723!1.34e-14!436;CL:0002057!1.44e-14!42;CL:0000860!8.07e-13!45;CL:0000055!1.09e-12!180;CL:0000057!1.38e-11!75;CL:0002334!1.44e-10!12;CL:0002320!1.55e-09!365;CL:0000134!1.86e-09!358;CL:0002494!3.18e-08!16;CL:0000219!7.46e-08!390;CL:0002194!5.09e-07!63;CL:0000576!5.09e-07!63;CL:0000040!5.09e-07!63;CL:0000559!5.09e-07!63;CL:0002371!7.84e-07!591 | |||
|ontology_enrichment_celltype_v019=CL:0002334;5.58e-15;12!CL:1000306;6.21e-13;4!CL:0002547;6.21e-13;4!CL:0000860;2.16e-12;33!CL:0002057;2.16e-12;33!CL:0000473;4.11e-10;39!CL:0000234;4.11e-10;39!CL:0000569;7.90e-08;4!CL:0000576;2.17e-07;48!CL:0002583;8.06e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002334,5.45e-15,12;CL:1000306,9.57e-13,4;CL:0002547,9.57e-13,4;CL:0000860,1.16e-12,42;CL:0002057,1.16e-12,42;CL:0000134,1.67e-11,354;CL:0000048,1.83e-11,427;CL:0000723,4.04e-11,433;CL:0002320,4.82e-11,361;CL:0000034,1.13e-10,441;CL:0000473,1.24e-10,48;CL:0000234,1.24e-10,48;CL:0000219,1.98e-09,386;CL:0000057,2.74e-08,76;CL:0002194,8.00e-08,59;CL:0000576,8.00e-08,59;CL:0000040,8.00e-08,59;CL:0000559,8.00e-08,59;CL:0000569,1.21e-07,4;CL:0000011,1.21e-07,4;CL:0002009,1.83e-07,61 | |||
|ontology_enrichment_development_v019=CL:0002057;2.43e-09;42!CL:0000011;7.90e-08;4 | |||
|ontology_enrichment_disease=DOID:2394!2.73e-12!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;7.93e-16;14!DOID:193;2.30e-08;29!DOID:120;2.19e-07;27 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.73e-16,14;DOID:193,1.16e-08,29;DOID:120,1.07e-07,27 | |||
|ontology_enrichment_uberon=UBERON:0002204!1.33e-10!167;UBERON:0002384!1.72e-10!375;UBERON:0003081!7.22e-09!216;UBERON:0000948!2.95e-07!24;UBERON:0005498!2.95e-07!24;UBERON:0004140!2.95e-07!24;UBERON:0009881!2.95e-07!24;UBERON:0004141!2.95e-07!24;UBERON:0003084!2.95e-07!24;UBERON:0007005!2.95e-07!24;UBERON:0004139!2.95e-07!24;UBERON:0004291!2.95e-07!24;UBERON:0004573!5.51e-07!33;UBERON:0004571!5.51e-07!33 | |||
|ontology_enrichment_uberon_v019=UBERON:0004797;6.21e-13;4!UBERON:0000415;6.21e-13;4!UBERON:0007240;6.21e-13;4!UBERON:0005742;6.21e-13;4!UBERON:0005734;6.21e-13;4!UBERON:0004664;6.21e-13;4!UBERON:0004663;6.21e-13;4!UBERON:0002118;1.33e-09;5!UBERON:0000992;1.04e-07;13!UBERON:0004909;8.06e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000415,9.57e-13,4;UBERON:0007240,9.57e-13,4;UBERON:0005742,9.57e-13,4;UBERON:0005734,9.57e-13,4;UBERON:0004664,9.57e-13,4;UBERON:0004663,9.57e-13,4;UBERON:0002384,4.26e-11,371;UBERON:0002118,7.73e-10,5;UBERON:0000926,4.35e-09,315;UBERON:0004120,4.35e-09,315;UBERON:0006603,4.35e-09,315;UBERON:0000992,6.52e-08,13;UBERON:0003081,8.71e-08,203;UBERON:0004797,2.81e-07,7;UBERON:0004909,3.70e-07,2 | |||
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| |||
|short_description=p15@VCAN | |||
}} |
Revision as of 16:43, 13 September 2013
Short description: | p15@VCAN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_15_at_VCAN_5end |
Coexpression cluster: | C456_Fibroblast_Smooth_CD14_Preadipocyte_Lens_mesenchymal_serous |
Association with transcript: | -294bp_to_ENST00000507162_5end |
EntrezGene: | VCAN |
HGNC: | 2464 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
preadipocyte | 5.45e-15 | 12 |
fibroblast of tunica adventitia of artery | 9.57e-13 | 4 |
fibroblast of the aortic adventitia | 9.57e-13 | 4 |
classical monocyte | 1.16e-12 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.16e-12 | 42 |
mesenchymal cell | 1.67e-11 | 354 |
multi fate stem cell | 1.83e-11 | 427 |
somatic stem cell | 4.04e-11 | 433 |
connective tissue cell | 4.82e-11 | 361 |
stem cell | 1.13e-10 | 441 |
defensive cell | 1.24e-10 | 48 |
phagocyte | 1.24e-10 | 48 |
motile cell | 1.98e-09 | 386 |
fibroblast | 2.74e-08 | 76 |
monopoietic cell | 8.00e-08 | 59 |
monocyte | 8.00e-08 | 59 |
monoblast | 8.00e-08 | 59 |
promonocyte | 8.00e-08 | 59 |
cardiac mesenchymal cell | 1.21e-07 | 4 |
migratory trunk neural crest cell | 1.21e-07 | 4 |
macrophage dendritic cell progenitor | 1.83e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
artery wall | 9.57e-13 | 4 |
tunica adventitia of artery | 9.57e-13 | 4 |
adventitia | 9.57e-13 | 4 |
tunica adventitia of blood vessel | 9.57e-13 | 4 |
aorta tunica adventitia | 9.57e-13 | 4 |
aorta wall | 9.57e-13 | 4 |
connective tissue | 4.26e-11 | 371 |
right ovary | 7.73e-10 | 5 |
mesoderm | 4.35e-09 | 315 |
mesoderm-derived structure | 4.35e-09 | 315 |
presumptive mesoderm | 4.35e-09 | 315 |
female gonad | 6.52e-08 | 13 |
lateral plate mesoderm | 8.71e-08 | 203 |
blood vessel layer | 2.81e-07 | 7 |
epithelium of gonad | 3.70e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.73e-16 | 14 |
reproductive organ cancer | 1.16e-08 | 29 |
female reproductive organ cancer | 1.07e-07 | 27 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.