FFCP PHASE1:Mm9::chr17:43804338..43804342,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=56050|HGNC=|UniProt=Q9JKJ9,Q544S6|association_with_transcript=-31bp_to_ENSMUST00000170988,NM_018887,uc008cpn.1,uc012atu.1,uc012atv.1_5end|description=CAGE_peak_3_at_Cyp39a1_5end|id=chr17:43804338..43804342,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000464!1.31e-09!57;UBERON:0001048!6.71e-09!147;UBERON:0003103!3.25e-08!43;UBERON:0000468!4.17e-08!333;UBERON:0000922!4.57e-08!328;UBERON:0000466!8.44e-08!79|ontology_enrichment_uberon_v019_2=UBERON:0003103,5.54e-08,43;UBERON:0001048,5.83e-08,134|phase1_expression=2.88267924788629,0.348975407639361,0,0,0,1.17515490338323,0.467225281191051,0.129123323441576,0,0,0,0,0.342401459862411,0.174840804837995,0,0,0,0.473193248037357,0.137114433605739,0,1.78590909317247,0,0,0.47997726838022,0.22940928106717,0,0.430761996159075,0.646413698057667,1.33016393619462,1.26015064879965,0.221730510655305,0,0,0,2.88851619751275,1.82858109894342,1.63335485009895,0,0,0,0,0,0,0.251793635951155,0.304130793658544,0.367093504323363,0,1.30815093828268,0,0.58328969722285,0.419959264876088,2.87505128729943,0.335565212115473,0,0,0.514518872071894,1.14613375975503,1.03134418455488,0.606949382578793,0.528990979272033,1.26766280701236,0,0.889294796111139,0,0,0,0,1.15265491596466,1.76272340924412,0.945041568321835,1.47227472945967,0.285650984403804,0.883474163806454,2.08234358665422,0.670918297127655,1.83843757322004,1.10115880999389,0.383062014255563,0.614426133024974,0.659431438650969,0.457438218012048,1.04182674111352,0.279182999001381,0.56276261003168,0.763991238884051,1.47314292736834,1.13897344639282,0.931997229126503,0.454357159999104,2.94729084416464,1.44932244350839,0,0,1.07940638327563,0,0.448026887097336,1.12355536105401,1.02258193546835,2.59786004602869,0.70667914902068,5.35204995151386,1.28326477414318,0,0,3.030874574157,2.28023878927589,2.02209778005913,1.59857431606684,0,0.742210695324124,1.73485326766136,1.82679286987285,1.15307748628029,1.50722640552623,2.4693628498498,1.13099932196708,0.494389935468748,0.433798070759735,0.884610551949874,0.808834249737046,1.32504911076236,0.484875253135222,1.86391761218122,0.585561594023094,1.46612694769419,1.02182822083437,0.479260498023681,0,0.381210681219194,0.299581278809645,0,1.00523481690292,0.347648640384553,0,0.62336413367868,0.486723789203273,2.54598409625791,1.8661045591514,5.05445516867349,2.31486041475121,2.21204753036596,3.67843367093557,4.50155324513373,3.31550599238573,5.8511389270142,8.07116437794554,6.65282244374075,1.29351685369508,1.5089759505299,2.08016688184601,1.75951124163949,2.41115305670332,3.33656699070717,1.74126083261083,2.46938563689532,2.7864797354589,0,0,0,3.93538967817454,2.81431271977315,6.48223421259654,5.20838418287463,8.85439042863317,11.1072321278912,10.9290954032692,8.31647544338819,11.0927075248811,4.11399624783701,4.92502392237286,2.43206428637567,2.04679982395465,1.97595103761946,2.28150911892632,0.210289948564127,1.85228302282712,0.330418782983798,0,2.98603550749328,3.25131340604614,1.41754207454303,0.605050573870028,0.667134131534611,1.71203063501303,0.949058123089023,1.64698954724011,2.26201687920243,2.78539060857611,0.974820435595601,1.79763881730844,3.02593269824572,3.38540164532424,1.51734320762465,2.05647322697512,3.38123207019241,2.64746726198909,3.29719228184964,2.59502533594179,4.23684798732524,2.50937251565324,1.41298855057237,2.34454611451421,0.889357881261447,0.667380422864376,0.589676985339609,0.449724224769707,0.405720242777006,1.92941727801933,2.03700681425136,2.01387296215567,2.7562988551756,1.92192989231657,15.814502718009,3.34926852901653,2.18426371180192,1.76805214562978,1.25578189465339,2.8946611281802,2.95605104266567,1.70542270593436,1.95557971730431,2.71592137240301,6.80601720036656,4.35516269348721,4.04674189506223,3.70753930929818,2.36452716159286,3.10050565508285,3.18909537314974,2.45794972073607,2.59027472798843,3.47157740595628,0,0,1.47529281905711,1.37968373152366,0.80275294993896,0.820481806145422,1.63934945376675,3.28212205365685,1.57754109708128,2.34263246577983,2.15423397732799,0.716906393857656,1.11399337041197,1.41538265394416,0.809621403349789,2.33804686329049,1.58115111178609,0.321321316421807,0.99358059645788,2.49291845134157,2.28041743095006,1.31976098378028,0,3.15614827001476,2.72091201268276,3.58349651536206,0.885905678642318,2.15204603560749,1.55056975900933,2.90826983582004,4.9909632973861,2.21225730555071,0,3.09406629744561,2.7235168460303,2.34079422240703,3.23396709456886,4.07240366560025,3.19212420556092,4.28085162244969,4.11372551505302,1.8267896946876,0.23467170806371,1.0591603543191,0.661585194164886,0.49465875882444,3.06782410722221,1.62844897306021,1.90995750405018,1.14898629821543,2.33184669303881,0.556275906031529,0.170870880797853,2.06386867963222,1.29636169158798,0.376736914009382,0.410082683163076,0.228778173206523,0,0.279902904647316,0.138199973804424,3.81868247206045,1.42351197111511,2.03319467126849,3.34816556547584,3.3454127362315,3.71216358368502,3.50647300600534,2.81021749466142,3.14107130380836,2.85152941241944,4.97071450469541,5.07323644815771,3.28936401296753,3.64008679005615,4.86127970860119,4.64975364519832,4.39285926276023,4.10750335260139,3.1249052362548,1.46803082195995,0.724752362478018,5.76060012515731,0,3.24360344464263,1.23253148597793,0.389762468933385,0.716106782669926,0.39736270956253,0.240390899039938,0.886137163047463,0.807731599585181,0.304827226619999,0.403304740547362,0.584747284438515,0.481059208201647,0.233753804363138,1.36038230169127,0.221985953374065,0,0.167884616364078,2.12508553435409,2.25218970541418,0.549454872801795,0.428736758158132,5.01572104035363,0.564751842617067,0,0,0.343706364687375,0,0,0,0.45032120322422,0,0,2.90604573235695,2.79317411380722,1.02440163452481,0.972426868273176,0.419226325255965,0.919217542250071,1.11123363900808,2.26638562962784,0.962757628775446,2.02157769411038,2.02783439912192,1.13175804831646,1.40462261204824,1.28050304809739,1.49332219284595,1.42888107384922,1.73826488917283,1.54327376370964,3.29668720642645,1.76638704161277,2.05721551431249,1.24233064311536,1.1921809497366,1.88950341622027,1.88218760830661,1.86152137361688,0.73171189149109,1.31534855718921,2.58027816307137,2.24456908663095,0.949080144993393,2.1670986122624,2.04615521584845,1.39443157067369,1.35034627686799,0.999242311751784,2.10538447600868,0.429742108096597,0.956441660344217,1.98532277207564,1.39120701372253|short_description=p3@Cyp39a1}} | ||
|EntrezGene=56050 | |||
|HGNC= | |||
|UniProt=Q9JKJ9,Q544S6 | |||
|association_with_transcript=-31bp_to_ENSMUST00000170988,NM_018887,uc008cpn.1,uc012atu.1,uc012atv.1_5end | |||
|description=CAGE_peak_3_at_Cyp39a1_5end | |||
|id=chr17:43804338..43804342,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000464!1.31e-09!57;UBERON:0001048!6.71e-09!147;UBERON:0003103!3.25e-08!43;UBERON:0000468!4.17e-08!333;UBERON:0000922!4.57e-08!328;UBERON:0000466!8.44e-08!79 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003103,5.54e-08,43;UBERON:0001048,5.83e-08,134 | |||
|phase1_expression=2.88267924788629,0.348975407639361,0,0,0,1.17515490338323,0.467225281191051,0.129123323441576,0,0,0,0,0.342401459862411,0.174840804837995,0,0,0,0.473193248037357,0.137114433605739,0,1.78590909317247,0,0,0.47997726838022,0.22940928106717,0,0.430761996159075,0.646413698057667,1.33016393619462,1.26015064879965,0.221730510655305,0,0,0,2.88851619751275,1.82858109894342,1.63335485009895,0,0,0,0,0,0,0.251793635951155,0.304130793658544,0.367093504323363,0,1.30815093828268,0,0.58328969722285,0.419959264876088,2.87505128729943,0.335565212115473,0,0,0.514518872071894,1.14613375975503,1.03134418455488,0.606949382578793,0.528990979272033,1.26766280701236,0,0.889294796111139,0,0,0,0,1.15265491596466,1.76272340924412,0.945041568321835,1.47227472945967,0.285650984403804,0.883474163806454,2.08234358665422,0.670918297127655,1.83843757322004,1.10115880999389,0.383062014255563,0.614426133024974,0.659431438650969,0.457438218012048,1.04182674111352,0.279182999001381,0.56276261003168,0.763991238884051,1.47314292736834,1.13897344639282,0.931997229126503,0.454357159999104,2.94729084416464,1.44932244350839,0,0,1.07940638327563,0,0.448026887097336,1.12355536105401,1.02258193546835,2.59786004602869,0.70667914902068,5.35204995151386,1.28326477414318,0,0,3.030874574157,2.28023878927589,2.02209778005913,1.59857431606684,0,0.742210695324124,1.73485326766136,1.82679286987285,1.15307748628029,1.50722640552623,2.4693628498498,1.13099932196708,0.494389935468748,0.433798070759735,0.884610551949874,0.808834249737046,1.32504911076236,0.484875253135222,1.86391761218122,0.585561594023094,1.46612694769419,1.02182822083437,0.479260498023681,0,0.381210681219194,0.299581278809645,0,1.00523481690292,0.347648640384553,0,0.62336413367868,0.486723789203273,2.54598409625791,1.8661045591514,5.05445516867349,2.31486041475121,2.21204753036596,3.67843367093557,4.50155324513373,3.31550599238573,5.8511389270142,8.07116437794554,6.65282244374075,1.29351685369508,1.5089759505299,2.08016688184601,1.75951124163949,2.41115305670332,3.33656699070717,1.74126083261083,2.46938563689532,2.7864797354589,0,0,0,3.93538967817454,2.81431271977315,6.48223421259654,5.20838418287463,8.85439042863317,11.1072321278912,10.9290954032692,8.31647544338819,11.0927075248811,4.11399624783701,4.92502392237286,2.43206428637567,2.04679982395465,1.97595103761946,2.28150911892632,0.210289948564127,1.85228302282712,0.330418782983798,0,2.98603550749328,3.25131340604614,1.41754207454303,0.605050573870028,0.667134131534611,1.71203063501303,0.949058123089023,1.64698954724011,2.26201687920243,2.78539060857611,0.974820435595601,1.79763881730844,3.02593269824572,3.38540164532424,1.51734320762465,2.05647322697512,3.38123207019241,2.64746726198909,3.29719228184964,2.59502533594179,4.23684798732524,2.50937251565324,1.41298855057237,2.34454611451421,0.889357881261447,0.667380422864376,0.589676985339609,0.449724224769707,0.405720242777006,1.92941727801933,2.03700681425136,2.01387296215567,2.7562988551756,1.92192989231657,15.814502718009,3.34926852901653,2.18426371180192,1.76805214562978,1.25578189465339,2.8946611281802,2.95605104266567,1.70542270593436,1.95557971730431,2.71592137240301,6.80601720036656,4.35516269348721,4.04674189506223,3.70753930929818,2.36452716159286,3.10050565508285,3.18909537314974,2.45794972073607,2.59027472798843,3.47157740595628,0,0,1.47529281905711,1.37968373152366,0.80275294993896,0.820481806145422,1.63934945376675,3.28212205365685,1.57754109708128,2.34263246577983,2.15423397732799,0.716906393857656,1.11399337041197,1.41538265394416,0.809621403349789,2.33804686329049,1.58115111178609,0.321321316421807,0.99358059645788,2.49291845134157,2.28041743095006,1.31976098378028,0,3.15614827001476,2.72091201268276,3.58349651536206,0.885905678642318,2.15204603560749,1.55056975900933,2.90826983582004,4.9909632973861,2.21225730555071,0,3.09406629744561,2.7235168460303,2.34079422240703,3.23396709456886,4.07240366560025,3.19212420556092,4.28085162244969,4.11372551505302,1.8267896946876,0.23467170806371,1.0591603543191,0.661585194164886,0.49465875882444,3.06782410722221,1.62844897306021,1.90995750405018,1.14898629821543,2.33184669303881,0.556275906031529,0.170870880797853,2.06386867963222,1.29636169158798,0.376736914009382,0.410082683163076,0.228778173206523,0,0.279902904647316,0.138199973804424,3.81868247206045,1.42351197111511,2.03319467126849,3.34816556547584,3.3454127362315,3.71216358368502,3.50647300600534,2.81021749466142,3.14107130380836,2.85152941241944,4.97071450469541,5.07323644815771,3.28936401296753,3.64008679005615,4.86127970860119,4.64975364519832,4.39285926276023,4.10750335260139,3.1249052362548,1.46803082195995,0.724752362478018,5.76060012515731,0,3.24360344464263,1.23253148597793,0.389762468933385,0.716106782669926,0.39736270956253,0.240390899039938,0.886137163047463,0.807731599585181,0.304827226619999,0.403304740547362,0.584747284438515,0.481059208201647,0.233753804363138,1.36038230169127,0.221985953374065,0,0.167884616364078,2.12508553435409,2.25218970541418,0.549454872801795,0.428736758158132,5.01572104035363,0.564751842617067,0,0,0.343706364687375,0,0,0,0.45032120322422,0,0,2.90604573235695,2.79317411380722,1.02440163452481,0.972426868273176,0.419226325255965,0.919217542250071,1.11123363900808,2.26638562962784,0.962757628775446,2.02157769411038,2.02783439912192,1.13175804831646,1.40462261204824,1.28050304809739,1.49332219284595,1.42888107384922,1.73826488917283,1.54327376370964,3.29668720642645,1.76638704161277,2.05721551431249,1.24233064311536,1.1921809497366,1.88950341622027,1.88218760830661,1.86152137361688,0.73171189149109,1.31534855718921,2.58027816307137,2.24456908663095,0.949080144993393,2.1670986122624,2.04615521584845,1.39443157067369,1.35034627686799,0.999242311751784,2.10538447600868,0.429742108096597,0.956441660344217,1.98532277207564,1.39120701372253 | |||
|short_description=p3@Cyp39a1 | |||
}} | |||
Revision as of 14:34, 13 September 2013
| Short description: | p3@Cyp39a1 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_3_at_Cyp39a1_5end |
| Coexpression cluster: | NA |
| Association with transcript: | -31bp_to_ENSMUST00000170988, NM_018887, uc008cpn.1, uc012atu.1, uc012atv.1_5end |
| EntrezGene: | Cyp39a1 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| compound organ | 5.54e-08 | 43 |
| primordium | 5.83e-08 | 134 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
