FFCP PHASE1:Mm9::chr17:30025515..30025538,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=74762|HGNC=|MCL_coexpression_id=22|UniProt=E9PY95|association_with_transcript=35bp_to_ENSMUST00000171691_5end|description=CAGE_peak_1_at_Mdga1_5end|id=chr17:30025515..30025538,-|ontology_enrichment_celltype=CL:0000117!1.68e-13!23;CL:0000337!1.68e-13!23;CL:0000221!7.32e-10!44;CL:0000133!7.32e-10!44;CL:0002319!2.38e-09!43;CL:0000540!2.30e-08!33;CL:0000047!2.30e-08!33;CL:0000031!2.30e-08!33;CL:0000404!2.30e-08!33;CL:0000055!9.04e-08!50;CL:0000393!3.06e-07!39;CL:0000211!3.06e-07!39|ontology_enrichment_celltype_v019_2=CL:0000117,4.91e-15,23;CL:0000337,4.91e-15,23;CL:0000221,1.12e-09,44;CL:0000133,1.12e-09,44;CL:0002319,3.98e-09,43;CL:0000540,1.46e-08,33;CL:0000047,1.46e-08,33;CL:0000031,1.46e-08,33;CL:0000404,1.46e-08,33;CL:0000393,8.05e-07,39;CL:0000211,8.05e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.97e-17!73;UBERON:0005743!1.97e-17!73;UBERON:0000073!1.48e-16!75;UBERON:0001016!1.48e-16!75;UBERON:0001049!2.11e-16!52;UBERON:0005068!2.11e-16!52;UBERON:0006241!2.11e-16!52;UBERON:0007135!2.11e-16!52;UBERON:0000033!8.36e-16!63;UBERON:0002020!1.88e-15!34;UBERON:0000955!6.83e-15!50;UBERON:0006238!6.83e-15!50;UBERON:0002616!3.03e-14!49;UBERON:0004121!9.59e-14!102;UBERON:0000924!9.59e-14!102;UBERON:0006601!9.59e-14!102;UBERON:0002346!1.78e-13!71;UBERON:0003075!1.78e-13!71;UBERON:0007284!1.78e-13!71;UBERON:0003056!1.81e-13!49;UBERON:0003080!1.17e-12!40;UBERON:0002780!1.30e-12!39;UBERON:0001890!1.30e-12!39;UBERON:0006240!1.30e-12!39;UBERON:0000153!1.92e-12!94;UBERON:0002791!2.21e-12!29;UBERON:0003528!2.21e-12!29;UBERON:0001893!2.21e-12!29;UBERON:0007811!1.61e-11!86;UBERON:0000956!2.35e-08!21;UBERON:0001869!2.35e-08!21;UBERON:0000203!2.35e-08!21|ontology_enrichment_uberon_v019_2=UBERON:0000073,4.21e-18,54;UBERON:0001017,2.52e-17,73;UBERON:0001049,1.01e-16,52;UBERON:0005068,1.01e-16,52;UBERON:0006241,1.01e-16,52;UBERON:0007135,1.01e-16,52;UBERON:0002020,1.06e-16,34;UBERON:0001016,3.62e-16,75;UBERON:0002346,1.88e-15,64;UBERON:0003075,1.88e-15,64;UBERON:0007284,1.88e-15,64;UBERON:0004121,4.69e-15,95;UBERON:0000924,4.69e-15,95;UBERON:0006601,4.69e-15,95;UBERON:0010371,4.71e-15,73;UBERON:0000955,7.21e-15,47;UBERON:0006238,7.21e-15,47;UBERON:0002616,3.69e-14,46;UBERON:0003056,1.67e-13,49;UBERON:0003528,2.92e-13,29;UBERON:0002791,2.92e-13,29;UBERON:0001893,2.92e-13,29;UBERON:0003080,5.77e-13,40;UBERON:0002780,6.66e-13,39;UBERON:0001890,6.66e-13,39;UBERON:0006240,6.66e-13,39;UBERON:0010314,6.61e-11,92;UBERON:0000956,9.28e-09,21;UBERON:0001869,9.28e-09,21;UBERON:0000203,9.28e-09,21|phase1_expression=8.48788889655408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10556277196391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.51076181570693,1.31790010585369,0.550640256485045,10.1710874765245,2.39827672018491,1.5378032791413,0.777719596297134,3.49966054063406,2.87505128729943,0,0,0,0.257259436035947,1.14613375975503,0.515672092277442,27.7173551377649,25.3915670050576,20.2826049121977,1.35537812827653,4.4464739805557,0,0.988866362566974,0.7104801149461,6.2916023208865,7.68436610643109,25.0928861786516,26.191152036348,18.718921560273,13.139945282575,8.39300455616131,8.45186514583183,9.58454710182364,7.35375029288017,1.10115880999389,3.31987079021488,4.45458946443106,21.2336923245612,24.7016637726506,22.9201883044974,3.62937898701795,5.06486349028512,6.57032465440283,15.0260578591571,12.9558229527184,12.6751623161204,0.37863096666592,0.151143120213571,0,0,0,0,0,0,0.983110940922263,2.55645483867087,0.259786004602869,2.12003744706204,10.7040999030277,10.2661181931454,33.1246811618639,14.2213340630666,0,0,0,0.11418387971906,0,0.148442139064825,1.21439728736295,1.21786191324856,0.230615497256059,0.452167921657868,1.17588707135705,0,0,0.289198713839823,0.884610551949874,2.75003644910596,1.98757366614354,1.93950101254089,0,2.34224637609238,2.93225389538837,0,8.98613433794402,4.79922184794726,6.22644112658017,2.09706895166752,3.66000482254901,7.79056983099759,3.12883776346098,5.8814555185976,2.49345653471472,3.40706652442291,1.01839363850316,0.373220911830279,0.252722758433675,0.841767423545896,1.43132487258974,2.06911893990126,2.16074555766419,1.65775299619287,1.7009124787832,2.8185018462667,5.05989312622536,3.88055056108524,2.58681591519411,2.08016688184601,4.39877810409872,1.97276159184817,1.94633074457919,4.52727816478817,2.67516777330327,1.59227413454795,0,3.08817488537658,1.98914449576915,1.44988040774851,1.17263029990548,2.34080679899319,3.31442629819294,1.57411385397923,1.07986979021165,2.79040733700489,1.60964040839772,0.233530684734339,1.31647879930784,0.32833492815819,0.56748166682099,0.146199987425332,0.439100230582101,0.402619256281115,10.0939175310781,18.6257348406505,0,0,0.426576501070468,0.696710015581316,0.644337306610467,1.61346819698674,1.33426826306922,0.380451252225118,0,0.494096864172033,0.754005626400808,0,0.58489226135736,0,0,0,0.379335801906163,0.342745537829186,2.25415471346161,0.610953983535943,0.387904974335251,0.561086559122548,0.06323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| ||
|EntrezGene=74762 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|UniProt=E9PY95 | |||
|association_with_transcript=35bp_to_ENSMUST00000171691_5end | |||
|description=CAGE_peak_1_at_Mdga1_5end | |||
|id=chr17:30025515..30025538,- | |||
|ontology_enrichment_celltype=CL:0000117!1.68e-13!23;CL:0000337!1.68e-13!23;CL:0000221!7.32e-10!44;CL:0000133!7.32e-10!44;CL:0002319!2.38e-09!43;CL:0000540!2.30e-08!33;CL:0000047!2.30e-08!33;CL:0000031!2.30e-08!33;CL:0000404!2.30e-08!33;CL:0000055!9.04e-08!50;CL:0000393!3.06e-07!39;CL:0000211!3.06e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.91e-15,23;CL:0000337,4.91e-15,23;CL:0000221,1.12e-09,44;CL:0000133,1.12e-09,44;CL:0002319,3.98e-09,43;CL:0000540,1.46e-08,33;CL:0000047,1.46e-08,33;CL:0000031,1.46e-08,33;CL:0000404,1.46e-08,33;CL:0000393,8.05e-07,39;CL:0000211,8.05e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.97e-17!73;UBERON:0005743!1.97e-17!73;UBERON:0000073!1.48e-16!75;UBERON:0001016!1.48e-16!75;UBERON:0001049!2.11e-16!52;UBERON:0005068!2.11e-16!52;UBERON:0006241!2.11e-16!52;UBERON:0007135!2.11e-16!52;UBERON:0000033!8.36e-16!63;UBERON:0002020!1.88e-15!34;UBERON:0000955!6.83e-15!50;UBERON:0006238!6.83e-15!50;UBERON:0002616!3.03e-14!49;UBERON:0004121!9.59e-14!102;UBERON:0000924!9.59e-14!102;UBERON:0006601!9.59e-14!102;UBERON:0002346!1.78e-13!71;UBERON:0003075!1.78e-13!71;UBERON:0007284!1.78e-13!71;UBERON:0003056!1.81e-13!49;UBERON:0003080!1.17e-12!40;UBERON:0002780!1.30e-12!39;UBERON:0001890!1.30e-12!39;UBERON:0006240!1.30e-12!39;UBERON:0000153!1.92e-12!94;UBERON:0002791!2.21e-12!29;UBERON:0003528!2.21e-12!29;UBERON:0001893!2.21e-12!29;UBERON:0007811!1.61e-11!86;UBERON:0000956!2.35e-08!21;UBERON:0001869!2.35e-08!21;UBERON:0000203!2.35e-08!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,4.21e-18,54;UBERON:0001017,2.52e-17,73;UBERON:0001049,1.01e-16,52;UBERON:0005068,1.01e-16,52;UBERON:0006241,1.01e-16,52;UBERON:0007135,1.01e-16,52;UBERON:0002020,1.06e-16,34;UBERON:0001016,3.62e-16,75;UBERON:0002346,1.88e-15,64;UBERON:0003075,1.88e-15,64;UBERON:0007284,1.88e-15,64;UBERON:0004121,4.69e-15,95;UBERON:0000924,4.69e-15,95;UBERON:0006601,4.69e-15,95;UBERON:0010371,4.71e-15,73;UBERON:0000955,7.21e-15,47;UBERON:0006238,7.21e-15,47;UBERON:0002616,3.69e-14,46;UBERON:0003056,1.67e-13,49;UBERON:0003528,2.92e-13,29;UBERON:0002791,2.92e-13,29;UBERON:0001893,2.92e-13,29;UBERON:0003080,5.77e-13,40;UBERON:0002780,6.66e-13,39;UBERON:0001890,6.66e-13,39;UBERON:0006240,6.66e-13,39;UBERON:0010314,6.61e-11,92;UBERON:0000956,9.28e-09,21;UBERON:0001869,9.28e-09,21;UBERON:0000203,9.28e-09,21 | |||
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| |||
|short_description=p1@Mdga1 | |||
}} |
Revision as of 14:01, 13 September 2013
Short description: | p1@Mdga1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Mdga1_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 35bp_to_ENSMUST00000171691_5end |
EntrezGene: | Mdga1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.91e-15 | 23 |
neuroblast (sensu Vertebrata) | 4.91e-15 | 23 |
ectodermal cell | 1.12e-09 | 44 |
neurectodermal cell | 1.12e-09 | 44 |
neural cell | 3.98e-09 | 43 |
neuron | 1.46e-08 | 33 |
neuronal stem cell | 1.46e-08 | 33 |
neuroblast | 1.46e-08 | 33 |
electrically signaling cell | 1.46e-08 | 33 |
electrically responsive cell | 8.05e-07 | 39 |
electrically active cell | 8.05e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 4.21e-18 | 54 |
central nervous system | 2.52e-17 | 73 |
neural tube | 1.01e-16 | 52 |
neural rod | 1.01e-16 | 52 |
future spinal cord | 1.01e-16 | 52 |
neural keel | 1.01e-16 | 52 |
gray matter | 1.06e-16 | 34 |
nervous system | 3.62e-16 | 75 |
neurectoderm | 1.88e-15 | 64 |
neural plate | 1.88e-15 | 64 |
presumptive neural plate | 1.88e-15 | 64 |
ectoderm-derived structure | 4.69e-15 | 95 |
ectoderm | 4.69e-15 | 95 |
presumptive ectoderm | 4.69e-15 | 95 |
ecto-epithelium | 4.71e-15 | 73 |
brain | 7.21e-15 | 47 |
future brain | 7.21e-15 | 47 |
regional part of brain | 3.69e-14 | 46 |
pre-chordal neural plate | 1.67e-13 | 49 |
brain grey matter | 2.92e-13 | 29 |
regional part of telencephalon | 2.92e-13 | 29 |
telencephalon | 2.92e-13 | 29 |
anterior neural tube | 5.77e-13 | 40 |
regional part of forebrain | 6.66e-13 | 39 |
forebrain | 6.66e-13 | 39 |
future forebrain | 6.66e-13 | 39 |
structure with developmental contribution from neural crest | 6.61e-11 | 92 |
cerebral cortex | 9.28e-09 | 21 |
cerebral hemisphere | 9.28e-09 | 21 |
pallium | 9.28e-09 | 21 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.