FFCP PHASE1:Mm9::chr17:27760702..27760730,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=56409|HGNC=|UniProt=Q9JI46|association_with_transcript=-292bp_to_ENSMUST00000025050_5end|description=CAGE_peak_6_at_Nudt3_5end|id=chr17:27760702..27760730,-|ontology_enrichment_celltype=CL:0000221!1.29e-11!44;CL:0000133!1.29e-11!44;CL:0002319!1.35e-11!43;CL:0000540!1.59e-08!33;CL:0000047!1.59e-08!33;CL:0000031!1.59e-08!33;CL:0000404!1.59e-08!33;CL:0000055!2.28e-08!50|ontology_enrichment_celltype_v019_2=CL:0002319,3.05e-11,43;CL:0000221,9.40e-11,44;CL:0000133,9.40e-11,44;CL:0000540,4.23e-08,33;CL:0000047,4.23e-08,33;CL:0000031,4.23e-08,33;CL:0000404,4.23e-08,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!3.47e-14!75;UBERON:0001016!3.47e-14!75;UBERON:0004121!5.85e-14!102;UBERON:0000924!5.85e-14!102;UBERON:0006601!5.85e-14!102;UBERON:0001017!1.12e-13!73;UBERON:0005743!1.12e-13!73;UBERON:0002346!1.24e-09!71;UBERON:0003075!1.24e-09!71;UBERON:0007284!1.24e-09!71;UBERON:0000033!6.06e-08!63;UBERON:0001049!1.28e-07!52;UBERON:0005068!1.28e-07!52;UBERON:0006241!1.28e-07!52;UBERON:0007135!1.28e-07!52;UBERON:0007100!2.09e-07!18;UBERON:0000948!2.09e-07!18;UBERON:0005498!2.09e-07!18;UBERON:0004140!2.09e-07!18;UBERON:0009881!2.09e-07!18;UBERON:0004141!2.09e-07!18;UBERON:0003084!2.09e-07!18;UBERON:0007005!2.09e-07!18;UBERON:0004139!2.09e-07!18;UBERON:0004291!2.09e-07!18;UBERON:0000025!6.14e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0010314,5.66e-16,92;UBERON:0004121,2.02e-15,95;UBERON:0000924,2.02e-15,95;UBERON:0006601,2.02e-15,95;UBERON:0001016,1.53e-13,75;UBERON:0001017,7.00e-13,73;UBERON:0002346,7.87e-11,64;UBERON:0003075,7.87e-11,64;UBERON:0007284,7.87e-11,64;UBERON:0007100,7.39e-10,18;UBERON:0000948,7.39e-10,18;UBERON:0005498,7.39e-10,18;UBERON:0004140,7.39e-10,18;UBERON:0009881,7.39e-10,18;UBERON:0004141,7.39e-10,18;UBERON:0003084,7.39e-10,18;UBERON:0007005,7.39e-10,18;UBERON:0004139,7.39e-10,18;UBERON:0004291,7.39e-10,18;UBERON:0010371,2.49e-09,73;UBERON:0004535,1.73e-07,23;UBERON:0001009,1.73e-07,23;UBERON:0000073,3.33e-07,54|phase1_expression=0.320297694209588,0.697950815278722,0.909998478779072,0.30246421130683,1.00179145989269,0,0.700837921786577,0.258246646883153,0.281577444303333,0.468129052643987,0,0.319088635981346,0,0.262261207256992,0.333109761815663,0.404950534779652,0,0,0,0,0.0850432901510698,1.58865521921416,0.261199789138935,0,0.45881856213434,0,0,0,0.570070258369122,0,0,3.17515336729816,0.61506478758457,0,0.288851619751275,0.166234645358492,0.408338712524738,0,0,0,1.76469446409304,0,1.45653105909346,0.125896817975577,0.304130793658544,0.183546752161682,1.56478268869608,0.65407546914134,2.85592037554813,2.3331587888914,0.839918529752175,5.75010257459886,0.503347818173209,0,0.672187598284928,0.257259436035947,0.286533439938757,0.515672092277442,1.01158230429799,2.64495489636016,1.26766280701236,0.338844532069132,0,1.3498495759221,0.988866362566974,1.4209602298922,2.09720077362883,1.53687322128622,0.518448061542388,0.675029691658453,0.210324961351382,2.57085885963423,3.75476519617743,0.489963196859816,0.479227355091182,0.919218786610021,3.30347642998166,1.78762273319263,1.99688493233117,1.84640802822271,1.73826522844578,0.52091337055676,2.79182999001381,3.37657566019008,1.37518422999129,2.06240009831567,0.996601765593721,1.3047961207771,1.21161909333094,1.28471652181535,0.289864488701678,0,1.3599426674155,2.15881276655127,0.649776417447669,0.896053774194671,1.12355536105401,1.1930122580464,0.259786004602869,0.70667914902068,0.845060518660083,2.56652954828636,0,0,0,0,0,0.68510327831436,0.258937883647172,0.29688427812965,0.346970653532272,0.913396434936424,0.922461989024234,0.150722640552623,0.352766121407114,0.376999773989026,0.247194967734374,1.44599356919912,0,3.558870698843,2.65009822152472,1.45462575940567,0,2.04946557908083,2.93225389538837,0.255457055208591,0.359445373517761,0.599902730993408,0.381210681219194,0.898743836428936,2.74500361691176,0.376963056338593,1.21677024134594,1.02286182932132,2.28566849015516,2.75810147215188,0,0.622034853050465,0.505445516867349,1.68353484709179,0,2.5289231487682,1.26043490863744,1.35634336052144,1.7009124787832,1.92170580427275,2.43624483855295,1.55222022443409,0.215567992932842,0.189106080167819,0.351902248327898,0.657587197282725,0.834141747676794,1.39300866608867,0.411564272815887,0.199034266818493,1.40442637462647,1.28673953557358,0.852490498186778,1.65700618028402,1.87620847984877,1.08037236876609,3.31442629819294,2.36117078096885,2.31400669331067,2.79040733700489,3.75582761959467,1.86824547787471,4.44311594766397,4.43252153013557,4.53985333456792,5.26319954731196,5.04965265169416,3.22095405024892,0.841159794256509,0.617427674275707,0,0,0.426576501070468,0,0.257734922644187,0.201683524623343,0.22237804384487,0,0.474529061544512,0.164698954724011,0.251335208800269,0,0.38992817423824,0.898819408654221,0,0.199141273254367,0.189667900953082,0.114248512609729,0,0,0.387904974335251,0,0.126473074248515,0.442830443938806,0.31399745568275,0,0.296452627087149,0.667380422864376,0.98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| ||
|EntrezGene=56409 | |||
|HGNC= | |||
|UniProt=Q9JI46 | |||
|association_with_transcript=-292bp_to_ENSMUST00000025050_5end | |||
|description=CAGE_peak_6_at_Nudt3_5end | |||
|id=chr17:27760702..27760730,- | |||
|ontology_enrichment_celltype=CL:0000221!1.29e-11!44;CL:0000133!1.29e-11!44;CL:0002319!1.35e-11!43;CL:0000540!1.59e-08!33;CL:0000047!1.59e-08!33;CL:0000031!1.59e-08!33;CL:0000404!1.59e-08!33;CL:0000055!2.28e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,3.05e-11,43;CL:0000221,9.40e-11,44;CL:0000133,9.40e-11,44;CL:0000540,4.23e-08,33;CL:0000047,4.23e-08,33;CL:0000031,4.23e-08,33;CL:0000404,4.23e-08,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.47e-14!75;UBERON:0001016!3.47e-14!75;UBERON:0004121!5.85e-14!102;UBERON:0000924!5.85e-14!102;UBERON:0006601!5.85e-14!102;UBERON:0001017!1.12e-13!73;UBERON:0005743!1.12e-13!73;UBERON:0002346!1.24e-09!71;UBERON:0003075!1.24e-09!71;UBERON:0007284!1.24e-09!71;UBERON:0000033!6.06e-08!63;UBERON:0001049!1.28e-07!52;UBERON:0005068!1.28e-07!52;UBERON:0006241!1.28e-07!52;UBERON:0007135!1.28e-07!52;UBERON:0007100!2.09e-07!18;UBERON:0000948!2.09e-07!18;UBERON:0005498!2.09e-07!18;UBERON:0004140!2.09e-07!18;UBERON:0009881!2.09e-07!18;UBERON:0004141!2.09e-07!18;UBERON:0003084!2.09e-07!18;UBERON:0007005!2.09e-07!18;UBERON:0004139!2.09e-07!18;UBERON:0004291!2.09e-07!18;UBERON:0000025!6.14e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,5.66e-16,92;UBERON:0004121,2.02e-15,95;UBERON:0000924,2.02e-15,95;UBERON:0006601,2.02e-15,95;UBERON:0001016,1.53e-13,75;UBERON:0001017,7.00e-13,73;UBERON:0002346,7.87e-11,64;UBERON:0003075,7.87e-11,64;UBERON:0007284,7.87e-11,64;UBERON:0007100,7.39e-10,18;UBERON:0000948,7.39e-10,18;UBERON:0005498,7.39e-10,18;UBERON:0004140,7.39e-10,18;UBERON:0009881,7.39e-10,18;UBERON:0004141,7.39e-10,18;UBERON:0003084,7.39e-10,18;UBERON:0007005,7.39e-10,18;UBERON:0004139,7.39e-10,18;UBERON:0004291,7.39e-10,18;UBERON:0010371,2.49e-09,73;UBERON:0004535,1.73e-07,23;UBERON:0001009,1.73e-07,23;UBERON:0000073,3.33e-07,54 | |||
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| |||
|short_description=p6@Nudt3 | |||
}} |
Revision as of 13:54, 13 September 2013
Short description: | p6@Nudt3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_Nudt3_5end |
Coexpression cluster: | NA |
Association with transcript: | -292bp_to_ENSMUST00000025050_5end |
EntrezGene: | Nudt3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 3.05e-11 | 43 |
ectodermal cell | 9.40e-11 | 44 |
neurectodermal cell | 9.40e-11 | 44 |
neuron | 4.23e-08 | 33 |
neuronal stem cell | 4.23e-08 | 33 |
neuroblast | 4.23e-08 | 33 |
electrically signaling cell | 4.23e-08 | 33 |
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 5.66e-16 | 92 |
ectoderm-derived structure | 2.02e-15 | 95 |
ectoderm | 2.02e-15 | 95 |
presumptive ectoderm | 2.02e-15 | 95 |
nervous system | 1.53e-13 | 75 |
central nervous system | 7.00e-13 | 73 |
neurectoderm | 7.87e-11 | 64 |
neural plate | 7.87e-11 | 64 |
presumptive neural plate | 7.87e-11 | 64 |
primary circulatory organ | 7.39e-10 | 18 |
heart | 7.39e-10 | 18 |
primitive heart tube | 7.39e-10 | 18 |
primary heart field | 7.39e-10 | 18 |
anterior lateral plate mesoderm | 7.39e-10 | 18 |
heart tube | 7.39e-10 | 18 |
heart primordium | 7.39e-10 | 18 |
cardiac mesoderm | 7.39e-10 | 18 |
cardiogenic plate | 7.39e-10 | 18 |
heart rudiment | 7.39e-10 | 18 |
ecto-epithelium | 2.49e-09 | 73 |
cardiovascular system | 1.73e-07 | 23 |
circulatory system | 1.73e-07 | 23 |
regional part of nervous system | 3.33e-07 | 54 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.