FFCP PHASE1:Mm9::chr17:27760324..27760335,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=56409|HGNC=|MCL_coexpression_id=2|UniProt=Q9JI46|association_with_transcript=61bp_to_NM_019837,uc008bpg.1_5end|description=CAGE_peak_4_at_Nudt3_5end|id=chr17:27760324..27760335,-|ontology_enrichment_celltype=CL:0000221!1.27e-15!44;CL:0000133!1.27e-15!44;CL:0002319!3.24e-15!43;CL:0000117!1.07e-12!23;CL:0000337!1.07e-12!23;CL:0000055!1.41e-12!50;CL:0000540!2.21e-12!33;CL:0000047!2.21e-12!33;CL:0000031!2.21e-12!33;CL:0000404!2.21e-12!33;CL:0000393!1.25e-10!39;CL:0000211!1.25e-10!39|ontology_enrichment_celltype_v019_2=CL:0000221,3.38e-17,44;CL:0000133,3.38e-17,44;CL:0002319,1.08e-16,43;CL:0000117,1.19e-15,23;CL:0000337,1.19e-15,23;CL:0000540,2.41e-13,33;CL:0000047,2.41e-13,33;CL:0000031,2.41e-13,33;CL:0000404,2.41e-13,33;CL:0000393,5.66e-11,39;CL:0000211,5.66e-11,39;CL:0002321,1.80e-08,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!3.52e-27!75;UBERON:0001016!3.52e-27!75;UBERON:0001017!1.82e-26!73;UBERON:0005743!1.82e-26!73;UBERON:0004121!3.13e-21!102;UBERON:0000924!3.13e-21!102;UBERON:0006601!3.13e-21!102;UBERON:0001049!3.66e-21!52;UBERON:0005068!3.66e-21!52;UBERON:0006241!3.66e-21!52;UBERON:0007135!3.66e-21!52;UBERON:0002020!3.23e-20!34;UBERON:0000955!5.36e-20!50;UBERON:0006238!5.36e-20!50;UBERON:0002616!1.68e-19!49;UBERON:0000033!4.66e-18!63;UBERON:0002346!1.05e-17!71;UBERON:0003075!1.05e-17!71;UBERON:0007284!1.05e-17!71;UBERON:0002791!2.49e-17!29;UBERON:0003528!2.49e-17!29;UBERON:0001893!2.49e-17!29;UBERON:0007811!1.04e-15!86;UBERON:0003080!2.96e-15!40;UBERON:0000153!6.21e-15!94;UBERON:0002780!9.34e-15!39;UBERON:0001890!9.34e-15!39;UBERON:0006240!9.34e-15!39;UBERON:0003056!2.21e-14!49;UBERON:0000956!5.11e-13!21;UBERON:0001869!5.11e-13!21;UBERON:0000203!5.11e-13!21;UBERON:0002619!4.04e-11!17;UBERON:0002021!3.89e-08!10;UBERON:0000411!3.89e-08!10;UBERON:0001950!3.89e-08!10|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.28e-30,75;UBERON:0001017,3.32e-29,73;UBERON:0000073,2.08e-26,54;UBERON:0002020,3.50e-25,34;UBERON:0001049,9.34e-25,52;UBERON:0005068,9.34e-25,52;UBERON:0006241,9.34e-25,52;UBERON:0007135,9.34e-25,52;UBERON:0004121,9.06e-24,95;UBERON:0000924,9.06e-24,95;UBERON:0006601,9.06e-24,95;UBERON:0002346,1.23e-22,64;UBERON:0003075,1.23e-22,64;UBERON:0007284,1.23e-22,64;UBERON:0003528,1.60e-21,29;UBERON:0002791,1.60e-21,29;UBERON:0001893,1.60e-21,29;UBERON:0000955,3.33e-21,47;UBERON:0006238,3.33e-21,47;UBERON:0002616,1.35e-20,46;UBERON:0010371,9.13e-19,73;UBERON:0010314,6.80e-18,92;UBERON:0003080,2.23e-17,40;UBERON:0002780,9.30e-17,39;UBERON:0001890,9.30e-17,39;UBERON:0006240,9.30e-17,39;UBERON:0000956,4.64e-16,21;UBERON:0001869,4.64e-16,21;UBERON:0000203,4.64e-16,21;UBERON:0003056,1.19e-15,49;UBERON:0002619,1.17e-13,17;UBERON:0002021,6.95e-10,10;UBERON:0000411,6.95e-10,10;UBERON:0001950,6.95e-10,10;UBERON:0003076,4.94e-08,12;UBERON:0003057,4.94e-08,12;UBERON:0000025,1.31e-07,114|phase1_expression=0.960893082628764,0,0,0.30246421130683,0,0.16787927191189,0,0.516493293766305,4.36445038670167,4.68129052643987,3.5955773327356,2.87179772383211,0.342401459862411,0.174840804837995,0.333109761815663,0.404950534779652,0,0.315462165358238,0.274228867211478,1.27316895539409,1.61582251287033,1.19149141441062,0.783599367416806,0.319984845586813,0.68822784320151,0.57423196411502,0,0.215471232685889,0,0.252030129759931,0.443461021310609,0.635030673459631,0.61506478758457,0,0,0.166234645358492,0.204169356262369,0,0,0,0.588231488031014,0.683045484958446,0.485510353031154,0.503587271902309,0.709638518536602,1.65192076945513,3.12956537739216,3.05235218932625,3.51497892375155,2.13872888981712,0.55994568650145,1.43752564364972,0,0.725362142011344,0,0.771778308107841,1.14613375975503,0,5.26022798234954,4.7609188134483,4.43681982454325,1.69422266034566,1.77858959222228,1.7997994345628,0,1.4209602298922,2.99600110518405,4.2264013585371,2.7996195323289,3.10513658162888,3.78584930432488,9.42648248532552,6.62605622854841,4.28717797252339,3.64212789869298,2.75765635983006,6.60695285996332,5.2351808614927,3.07213066512487,5.40733779693795,7.31901148819277,4.68822033501084,2.79182999001381,3.93933827022176,3.20876320331301,2.35702868378934,4.9830088279686,8.01517617048792,2.12033341332915,1.66257432234928,0,0,0,0,0,0,0.280888840263504,1.02258193546835,1.03914401841148,0.70667914902068,2.81686839553361,0,5.09610479413291,7.11066703153331,0.432982082022428,0.253359865475099,1.51657333504435,0.22836775943812,0.258937883647172,0.890652834388949,0.693941307064543,0.608930956624282,0.691846491768175,0.753613202763113,0.117588707135705,0.628332956648377,0.247194967734374,0.144599356919912,0,2.26473589926373,0.441683036920787,1.45462575940567,0,1.75668478206928,3.77004072264219,0.255457055208591,0.359445373517761,1.79970819298022,0.762421362438388,3.74476598512057,8.6925114535539,6.03140890141749,13.0368240144207,16.8772201838018,3.94797284663164,5.67844420737152,0.81471491080253,0.373220911830279,0.758168275301024,0.210441855886474,1.43132487258974,0.459804208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| ||
|EntrezGene=56409 | |||
|HGNC= | |||
|MCL_coexpression_id=2 | |||
|UniProt=Q9JI46 | |||
|association_with_transcript=61bp_to_NM_019837,uc008bpg.1_5end | |||
|description=CAGE_peak_4_at_Nudt3_5end | |||
|id=chr17:27760324..27760335,- | |||
|ontology_enrichment_celltype=CL:0000221!1.27e-15!44;CL:0000133!1.27e-15!44;CL:0002319!3.24e-15!43;CL:0000117!1.07e-12!23;CL:0000337!1.07e-12!23;CL:0000055!1.41e-12!50;CL:0000540!2.21e-12!33;CL:0000047!2.21e-12!33;CL:0000031!2.21e-12!33;CL:0000404!2.21e-12!33;CL:0000393!1.25e-10!39;CL:0000211!1.25e-10!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,3.38e-17,44;CL:0000133,3.38e-17,44;CL:0002319,1.08e-16,43;CL:0000117,1.19e-15,23;CL:0000337,1.19e-15,23;CL:0000540,2.41e-13,33;CL:0000047,2.41e-13,33;CL:0000031,2.41e-13,33;CL:0000404,2.41e-13,33;CL:0000393,5.66e-11,39;CL:0000211,5.66e-11,39;CL:0002321,1.80e-08,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.52e-27!75;UBERON:0001016!3.52e-27!75;UBERON:0001017!1.82e-26!73;UBERON:0005743!1.82e-26!73;UBERON:0004121!3.13e-21!102;UBERON:0000924!3.13e-21!102;UBERON:0006601!3.13e-21!102;UBERON:0001049!3.66e-21!52;UBERON:0005068!3.66e-21!52;UBERON:0006241!3.66e-21!52;UBERON:0007135!3.66e-21!52;UBERON:0002020!3.23e-20!34;UBERON:0000955!5.36e-20!50;UBERON:0006238!5.36e-20!50;UBERON:0002616!1.68e-19!49;UBERON:0000033!4.66e-18!63;UBERON:0002346!1.05e-17!71;UBERON:0003075!1.05e-17!71;UBERON:0007284!1.05e-17!71;UBERON:0002791!2.49e-17!29;UBERON:0003528!2.49e-17!29;UBERON:0001893!2.49e-17!29;UBERON:0007811!1.04e-15!86;UBERON:0003080!2.96e-15!40;UBERON:0000153!6.21e-15!94;UBERON:0002780!9.34e-15!39;UBERON:0001890!9.34e-15!39;UBERON:0006240!9.34e-15!39;UBERON:0003056!2.21e-14!49;UBERON:0000956!5.11e-13!21;UBERON:0001869!5.11e-13!21;UBERON:0000203!5.11e-13!21;UBERON:0002619!4.04e-11!17;UBERON:0002021!3.89e-08!10;UBERON:0000411!3.89e-08!10;UBERON:0001950!3.89e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.28e-30,75;UBERON:0001017,3.32e-29,73;UBERON:0000073,2.08e-26,54;UBERON:0002020,3.50e-25,34;UBERON:0001049,9.34e-25,52;UBERON:0005068,9.34e-25,52;UBERON:0006241,9.34e-25,52;UBERON:0007135,9.34e-25,52;UBERON:0004121,9.06e-24,95;UBERON:0000924,9.06e-24,95;UBERON:0006601,9.06e-24,95;UBERON:0002346,1.23e-22,64;UBERON:0003075,1.23e-22,64;UBERON:0007284,1.23e-22,64;UBERON:0003528,1.60e-21,29;UBERON:0002791,1.60e-21,29;UBERON:0001893,1.60e-21,29;UBERON:0000955,3.33e-21,47;UBERON:0006238,3.33e-21,47;UBERON:0002616,1.35e-20,46;UBERON:0010371,9.13e-19,73;UBERON:0010314,6.80e-18,92;UBERON:0003080,2.23e-17,40;UBERON:0002780,9.30e-17,39;UBERON:0001890,9.30e-17,39;UBERON:0006240,9.30e-17,39;UBERON:0000956,4.64e-16,21;UBERON:0001869,4.64e-16,21;UBERON:0000203,4.64e-16,21;UBERON:0003056,1.19e-15,49;UBERON:0002619,1.17e-13,17;UBERON:0002021,6.95e-10,10;UBERON:0000411,6.95e-10,10;UBERON:0001950,6.95e-10,10;UBERON:0003076,4.94e-08,12;UBERON:0003057,4.94e-08,12;UBERON:0000025,1.31e-07,114 | |||
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| |||
|short_description=p4@Nudt3 | |||
}} |
Revision as of 13:54, 13 September 2013
Short description: | p4@Nudt3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Nudt3_5end |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | 61bp_to_NM_019837, uc008bpg.1_5end |
EntrezGene: | Nudt3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 3.38e-17 | 44 |
neurectodermal cell | 3.38e-17 | 44 |
neural cell | 1.08e-16 | 43 |
CNS neuron (sensu Vertebrata) | 1.19e-15 | 23 |
neuroblast (sensu Vertebrata) | 1.19e-15 | 23 |
neuron | 2.41e-13 | 33 |
neuronal stem cell | 2.41e-13 | 33 |
neuroblast | 2.41e-13 | 33 |
electrically signaling cell | 2.41e-13 | 33 |
electrically responsive cell | 5.66e-11 | 39 |
electrically active cell | 5.66e-11 | 39 |
embryonic cell | 1.80e-08 | 70 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.