FFCP PHASE1:Mm9::chr16:38089447..38089481,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=56637|HGNC=|MCL_coexpression_id=1|UniProt=Q9WV60,Q5KU03|association_with_transcript=360bp_to_ENSMUST00000023507,NM_019827,uc007zen.1_5end|description=CAGE_peak_2_at_Gsk3b_5end|id=chr16:38089447..38089481,+|ontology_enrichment_celltype=CL:0000117!9.61e-07!23;CL:0000337!9.61e-07!23|ontology_enrichment_celltype_v019_2=CL:0000117,9.61e-07,23;CL:0000337,9.61e-07,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!5.67e-11!63;UBERON:0000955!4.54e-10!50;UBERON:0006238!4.54e-10!50;UBERON:0002020!1.28e-09!34;UBERON:0002616!1.34e-09!49;UBERON:0001049!2.44e-09!52;UBERON:0005068!2.44e-09!52;UBERON:0006241!2.44e-09!52;UBERON:0007135!2.44e-09!52;UBERON:0003056!3.63e-09!49;UBERON:0002791!4.23e-09!29;UBERON:0003528!4.23e-09!29;UBERON:0001893!4.23e-09!29;UBERON:0004121!2.97e-08!102;UBERON:0000924!2.97e-08!102;UBERON:0006601!2.97e-08!102;UBERON:0003080!6.83e-08!40;UBERON:0007811!8.73e-08!86;UBERON:0002346!1.04e-07!71;UBERON:0003075!1.04e-07!71;UBERON:0007284!1.04e-07!71;UBERON:0000956!1.06e-07!21;UBERON:0001869!1.06e-07!21;UBERON:0000203!1.06e-07!21;UBERON:0002021!1.49e-07!10;UBERON:0000411!1.49e-07!10;UBERON:0001950!1.49e-07!10;UBERON:0001017!1.98e-07!73;UBERON:0005743!1.98e-07!73;UBERON:0002780!2.04e-07!39;UBERON:0001890!2.04e-07!39;UBERON:0006240!2.04e-07!39;UBERON:0000073!2.35e-07!75;UBERON:0001016!2.35e-07!75;UBERON:0000153!8.53e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.76e-10,54;UBERON:0004121,7.56e-10,95;UBERON:0000924,7.56e-10,95;UBERON:0006601,7.56e-10,95;UBERON:0002346,1.10e-09,64;UBERON:0003075,1.10e-09,64;UBERON:0007284,1.10e-09,64;UBERON:0002020,1.28e-09,34;UBERON:0010371,1.81e-09,73;UBERON:0001049,2.41e-09,52;UBERON:0005068,2.41e-09,52;UBERON:0006241,2.41e-09,52;UBERON:0007135,2.41e-09,52;UBERON:0003056,3.63e-09,49;UBERON:0003528,4.23e-09,29;UBERON:0002791,4.23e-09,29;UBERON:0001893,4.23e-09,29;UBERON:0000955,1.38e-08,47;UBERON:0006238,1.38e-08,47;UBERON:0002616,3.87e-08,46;UBERON:0003080,6.83e-08,40;UBERON:0000956,1.06e-07,21;UBERON:0001869,1.06e-07,21;UBERON:0000203,1.06e-07,21;UBERON:0002021,1.49e-07,10;UBERON:0000411,1.49e-07,10;UBERON:0001950,1.49e-07,10;UBERON:0001017,1.97e-07,73;UBERON:0002780,2.04e-07,39;UBERON:0001890,2.04e-07,39;UBERON:0006240,2.04e-07,39;UBERON:0001016,2.34e-07,75|phase1_expression=2.7225304007815,15.7038933437712,16.3799726180233,26.3143863836942,30.5546395267272,8.2260843236826,8.41005506143892,1.54947988129892,2.111830832275,2.34064526321993,2.91070545983358,2.47293692885543,1.71200729931206,1.74840804837995,9.99329285446988,11.3386149738303,13.2916756844348,3.3123527362615,4.9361196098066,3.39511721438424,8.1641558545027,2.58156473122302,2.08959831311148,5.43974237497583,3.67054849707472,10.3361753540704,10.7690499039769,6.03319451520489,3.23039813075836,6.04872311423834,2.43903561720835,6.98533740805594,7.99584223859941,0,4.91047753577167,2.99222361645286,5.3084032628216,6.69650609179052,3.906676722619,7.85285615960697,5.29408339227913,5.46436387966757,6.79714494243615,2.14024590558481,1.82478476195126,4.22157529971868,0,3.05235218932625,3.07560655828261,1.94429899074283,1.81982348112971,0,5.5368259999053,3.62681071005672,7.39406358113421,5.40244815675489,2.86533439938757,4.64104883049698,11.1274053472779,10.5798195854407,4.43681982454325,1.35537812827653,0,0.449949858640699,0.988866362566974,2.8419204597844,1.49800055259202,0.768436610643109,9.64313394468842,9.04539786822327,9.25429829946081,6.85562362569129,7.50953039235486,10.534208732486,11.0222291670972,9.19218786610021,20.9220173898839,24.2605942361857,28.2636021191488,5.27545150920775,8.05091263701205,5.2091337055676,28.1974828991395,18.0084035210138,13.1406493088057,8.83885756421003,6.69146899755784,6.89677949553612,4.84647637332378,6.87701196971748,5.50742528533188,2.58127163094416,7.47968467078526,4.85732872474035,5.84798775702902,3.58421509677868,6.17955448579708,3.40860645156115,1.81850203222008,2.82671659608272,3.94361575374705,10.2661181931454,10.1922095882658,14.2213340630666,2.38140145112336,3.04031838570118,3.0331466700887,4.68153906848146,1.8125651855302,4.89859058913922,4.3371331691534,6.08930956624282,4.38169444786511,1.95939432718409,3.88042733547826,4.90099706185734,6.42706916109372,4.62717942143717,11.4999371753484,5.98537344805414,8.39197770149496,7.75800405016355,5.59175283654366,15.517382241612,7.95897485891129,6.64188343542338,3.71426885968353,3.59941638596045,3.68503658511888,23.8167116653668,57.1875753523283,5.40313714085317,41.7178368461464,37.0787413128979,22.0255327233134,20.4423991465375,4.78645010096487,9.95255764880744,13.1415834385511,9.6803253707778,6.37590170517248,6.43725892413724,9.00310649026746,5.27466862425003,6.87168641428411,8.45550553880009,8.24575176125614,8.79591460512653,7.76044774558232,6.99692496620931,5.27853372491847,4.60311038097907,2.78047249225598,6.96504333044333,4.32142486456681,3.98068533636986,4.91549231119264,3.60287069960601,3.6941254921427,5.59239585845855,4.22146907965973,3.6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| ||
|EntrezGene=56637 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=Q9WV60,Q5KU03 | |||
|association_with_transcript=360bp_to_ENSMUST00000023507,NM_019827,uc007zen.1_5end | |||
|description=CAGE_peak_2_at_Gsk3b_5end | |||
|id=chr16:38089447..38089481,+ | |||
|ontology_enrichment_celltype=CL:0000117!9.61e-07!23;CL:0000337!9.61e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,9.61e-07,23;CL:0000337,9.61e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!5.67e-11!63;UBERON:0000955!4.54e-10!50;UBERON:0006238!4.54e-10!50;UBERON:0002020!1.28e-09!34;UBERON:0002616!1.34e-09!49;UBERON:0001049!2.44e-09!52;UBERON:0005068!2.44e-09!52;UBERON:0006241!2.44e-09!52;UBERON:0007135!2.44e-09!52;UBERON:0003056!3.63e-09!49;UBERON:0002791!4.23e-09!29;UBERON:0003528!4.23e-09!29;UBERON:0001893!4.23e-09!29;UBERON:0004121!2.97e-08!102;UBERON:0000924!2.97e-08!102;UBERON:0006601!2.97e-08!102;UBERON:0003080!6.83e-08!40;UBERON:0007811!8.73e-08!86;UBERON:0002346!1.04e-07!71;UBERON:0003075!1.04e-07!71;UBERON:0007284!1.04e-07!71;UBERON:0000956!1.06e-07!21;UBERON:0001869!1.06e-07!21;UBERON:0000203!1.06e-07!21;UBERON:0002021!1.49e-07!10;UBERON:0000411!1.49e-07!10;UBERON:0001950!1.49e-07!10;UBERON:0001017!1.98e-07!73;UBERON:0005743!1.98e-07!73;UBERON:0002780!2.04e-07!39;UBERON:0001890!2.04e-07!39;UBERON:0006240!2.04e-07!39;UBERON:0000073!2.35e-07!75;UBERON:0001016!2.35e-07!75;UBERON:0000153!8.53e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.76e-10,54;UBERON:0004121,7.56e-10,95;UBERON:0000924,7.56e-10,95;UBERON:0006601,7.56e-10,95;UBERON:0002346,1.10e-09,64;UBERON:0003075,1.10e-09,64;UBERON:0007284,1.10e-09,64;UBERON:0002020,1.28e-09,34;UBERON:0010371,1.81e-09,73;UBERON:0001049,2.41e-09,52;UBERON:0005068,2.41e-09,52;UBERON:0006241,2.41e-09,52;UBERON:0007135,2.41e-09,52;UBERON:0003056,3.63e-09,49;UBERON:0003528,4.23e-09,29;UBERON:0002791,4.23e-09,29;UBERON:0001893,4.23e-09,29;UBERON:0000955,1.38e-08,47;UBERON:0006238,1.38e-08,47;UBERON:0002616,3.87e-08,46;UBERON:0003080,6.83e-08,40;UBERON:0000956,1.06e-07,21;UBERON:0001869,1.06e-07,21;UBERON:0000203,1.06e-07,21;UBERON:0002021,1.49e-07,10;UBERON:0000411,1.49e-07,10;UBERON:0001950,1.49e-07,10;UBERON:0001017,1.97e-07,73;UBERON:0002780,2.04e-07,39;UBERON:0001890,2.04e-07,39;UBERON:0006240,2.04e-07,39;UBERON:0001016,2.34e-07,75 | |||
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| |||
|short_description=p2@Gsk3b | |||
}} |
Revision as of 12:36, 13 September 2013
Short description: | p2@Gsk3b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Gsk3b_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 360bp_to_ENSMUST00000023507, NM_019827, uc007zen.1_5end |
EntrezGene: | Gsk3b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 9.61e-07 | 23 |
neuroblast (sensu Vertebrata) | 9.61e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 2.76e-10 | 54 |
ectoderm-derived structure | 7.56e-10 | 95 |
ectoderm | 7.56e-10 | 95 |
presumptive ectoderm | 7.56e-10 | 95 |
neurectoderm | 1.10e-09 | 64 |
neural plate | 1.10e-09 | 64 |
presumptive neural plate | 1.10e-09 | 64 |
gray matter | 1.28e-09 | 34 |
ecto-epithelium | 1.81e-09 | 73 |
neural tube | 2.41e-09 | 52 |
neural rod | 2.41e-09 | 52 |
future spinal cord | 2.41e-09 | 52 |
neural keel | 2.41e-09 | 52 |
pre-chordal neural plate | 3.63e-09 | 49 |
brain grey matter | 4.23e-09 | 29 |
regional part of telencephalon | 4.23e-09 | 29 |
telencephalon | 4.23e-09 | 29 |
brain | 1.38e-08 | 47 |
future brain | 1.38e-08 | 47 |
regional part of brain | 3.87e-08 | 46 |
anterior neural tube | 6.83e-08 | 40 |
cerebral cortex | 1.06e-07 | 21 |
cerebral hemisphere | 1.06e-07 | 21 |
pallium | 1.06e-07 | 21 |
occipital lobe | 1.49e-07 | 10 |
visual cortex | 1.49e-07 | 10 |
neocortex | 1.49e-07 | 10 |
central nervous system | 1.97e-07 | 73 |
regional part of forebrain | 2.04e-07 | 39 |
forebrain | 2.04e-07 | 39 |
future forebrain | 2.04e-07 | 39 |
nervous system | 2.34e-07 | 75 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.