FFCP PHASE1:Hg19::chr4:77357318..77357335,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=57619|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=30422|TSSclassifier=S|UniProt=|association_with_transcript=19bp_to_ENST00000466541_5end|coexpression_cluster_id=C1944|description=CAGE_peak_10_at_SHROOM3_5end|id=chr4:77357318..77357335,+|ontology_enrichment_celltype=CL:0000128!1.49e-13!7;CL:0000126!1.49e-13!7;CL:0000127!1.49e-13!7;CL:0002453!1.49e-13!7;CL:0002319!1.07e-11!25;CL:0000243!2.51e-09!15;CL:0000125!2.51e-09!15;CL:0000030!2.51e-09!15;CL:0000339!2.51e-09!15;CL:0000095!4.41e-08!17;CL:0000123!4.41e-08!17;CL:0000133!2.17e-07!59;CL:0002605!5.02e-07!3;CL:0000064!5.73e-07!3;CL:0005012!5.73e-07!3;CL:0000067!5.73e-07!3;CL:0002304!5.73e-07!3|ontology_enrichment_celltype_v019=CL:0000128;3.24e-35;7!CL:0000126;3.24e-35;7!CL:0000127;3.24e-35;7!CL:0002605;3.39e-22;3!CL:0000064;5.98e-22;3!CL:0000067;5.98e-22;3!CL:0005012;5.98e-22;3!CL:0002304;5.98e-22;3!CL:0002319;2.94e-19;25!CL:0000243;3.99e-19;15!CL:0000125;3.99e-19;15!CL:0000095;4.97e-17;17!CL:0002603;6.21e-10;3!CL:0000342;4.56e-08;1!CL:0002565;4.56e-08;1!CL:0000306;7.43e-08;4!CL:0002222;7.43e-08;4!CL:0002224;7.43e-08;4|ontology_enrichment_celltype_v019_2=CL:0000128,4.37e-35,7;CL:0000126,4.37e-35,7;CL:0000127,4.37e-35,7;CL:0002453,4.37e-35,7;CL:0002605,3.78e-22,3;CL:0000064,6.21e-22,3;CL:0000067,6.21e-22,3;CL:0005012,6.21e-22,3;CL:0002304,6.21e-22,3;CL:0002319,3.05e-19,25;CL:0000243,4.17e-19,15;CL:0000125,4.17e-19,15;CL:0000030,4.17e-19,15;CL:0000339,4.17e-19,15;CL:0000095,5.16e-17,17;CL:0000123,5.16e-17,17;CL:0000133,3.92e-14,59;CL:0000221,2.90e-11,72;CL:0002603,5.68e-10,3;CL:0000342,6.24e-08,1;CL:0002565,6.24e-08,1;CL:0000306,7.97e-08,4;CL:0002222,7.97e-08,4;CL:0002224,7.97e-08,4;CL:0000333,4.62e-07,41|ontology_enrichment_development_v019=CL:0000339;3.99e-19;15!CL:0000133;1.39e-09;59!UBERON:0009117;6.91e-07;10!UBERON:0005564;6.91e-07;10|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3493;7.83e-15;2!DOID:0050619;4.56e-08;1!DOID:1357;4.56e-08;1|ontology_enrichment_disease_v019_2=DOID:3493,4.47e-15,2;DOID:0050619,5.43e-08,1;DOID:1357,5.43e-08,1|ontology_enrichment_uberon=UBERON:0005743!9.31e-48!86;UBERON:0003075!9.66e-46!86;UBERON:0007284!9.66e-46!86;UBERON:0002346!5.86e-43!90;UBERON:0001017!1.90e-42!82;UBERON:0000073!1.16e-41!94;UBERON:0001016!1.16e-41!94;UBERON:0001049!1.59e-36!57;UBERON:0005068!1.59e-36!57;UBERON:0006241!1.59e-36!57;UBERON:0007135!1.59e-36!57;UBERON:0000955!1.32e-34!69;UBERON:0006238!1.32e-34!69;UBERON:0000033!8.70e-34!123;UBERON:0002616!8.50e-33!59;UBERON:0000153!8.89e-33!129;UBERON:0007811!8.89e-33!129;UBERON:0003056!2.00e-32!61;UBERON:0004121!3.01e-30!169;UBERON:0000924!4.28e-29!173;UBERON:0006601!4.28e-29!173;UBERON:0002780!2.31e-26!41;UBERON:0001890!2.31e-26!41;UBERON:0006240!2.31e-26!41;UBERON:0002020!2.33e-26!34;UBERON:0003528!2.33e-26!34;UBERON:0001893!2.50e-26!34;UBERON:0001869!3.48e-26!32;UBERON:0003080!1.55e-25!42;UBERON:0002791!6.38e-25!33;UBERON:0000956!5.55e-22!25;UBERON:0000203!5.55e-22!25;UBERON:0007023!6.03e-21!115;UBERON:0002619!2.98e-17!22;UBERON:0001950!5.92e-17!20;UBERON:0007625!7.12e-13!11;UBERON:0003076!4.94e-12!15;UBERON:0003057!4.94e-12!15;UBERON:0004733!1.42e-10!12;UBERON:0002028!1.42e-10!12;UBERON:0007277!1.42e-10!12;UBERON:0001871!2.71e-10!7;UBERON:0004732!1.33e-09!13;UBERON:0000025!1.47e-09!194;UBERON:0000970!4.37e-09!20;UBERON:0002680!5.76e-09!9;UBERON:0001895!5.76e-09!9;UBERON:0010092!5.76e-09!9;UBERON:0000020!5.86e-09!23;UBERON:0001456!1.15e-08!21;UBERON:0000488!1.31e-08!4;UBERON:0002104!1.61e-08!21;UBERON:0001032!1.86e-08!24;UBERON:0004456!1.86e-08!24;UBERON:0000483!2.69e-08!309;UBERON:0000064!3.21e-08!219;UBERON:0000019!3.70e-08!19;UBERON:0000047!3.70e-08!19;UBERON:0004088!3.70e-08!19;UBERON:0003072!3.70e-08!19;UBERON:0003071!3.70e-08!19;UBERON:0004128!3.70e-08!19;UBERON:0000119!4.61e-08!312;UBERON:0000477!6.40e-08!286;UBERON:0000475!2.01e-07!365;UBERON:0000481!2.07e-07!347;UBERON:0000062!2.30e-07!511;UBERON:0004111!3.83e-07!241;UBERON:0000200!5.08e-07!6;UBERON:0001778!5.73e-07!3;UBERON:0001775!5.73e-07!3|ontology_enrichment_uberon_v019=UBERON:0000488;2.91e-28;4!UBERON:0007625;2.40e-22;11!UBERON:0001778;5.98e-22;3!UBERON:0001775;5.98e-22;3!UBERON:0002203;6.25e-19;6!UBERON:0001768;6.25e-19;6!UBERON:0002200;6.25e-19;6!UBERON:0001801;1.84e-17;14!UBERON:0000019;4.39e-17;19!UBERON:0000047;4.39e-17;19!UBERON:0004088;4.39e-17;19!UBERON:0010230;4.39e-17;19!UBERON:0000970;3.44e-16;20!UBERON:0002104;2.21e-15;21!UBERON:0001456;2.21e-15;21!UBERON:0000020;5.66e-14;23!UBERON:0001032;2.34e-13;24!UBERON:0004456;2.34e-13;24!UBERON:0006876;2.09e-10;11!UBERON:0001764;4.56e-08;1!UBERON:0001825;4.56e-08;1!UBERON:0002506;4.56e-08;1!UBERON:0001769;4.56e-08;1!UBERON:0010077;7.43e-08;4!UBERON:0005389;7.43e-08;4!UBERON:0000484;7.43e-08;4!UBERON:0000965;7.43e-08;4!UBERON:0001803;7.43e-08;4!UBERON:0010371;1.20e-07;31!UBERON:0000153;1.00e-06;54|ontology_enrichment_uberon_v019_2=UBERON:0000488,4.14e-28,4;UBERON:0007625,3.12e-22,11;UBERON:0001778,6.2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scription=p10@SHROOM3}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=57619 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30422 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=19bp_to_ENST00000466541_5end | |||
|coexpression_cluster_id=C1944 | |||
|description=CAGE_peak_10_at_SHROOM3_5end | |||
|id=chr4:77357318..77357335,+ | |||
|ontology_enrichment_celltype=CL:0000128!1.49e-13!7;CL:0000126!1.49e-13!7;CL:0000127!1.49e-13!7;CL:0002453!1.49e-13!7;CL:0002319!1.07e-11!25;CL:0000243!2.51e-09!15;CL:0000125!2.51e-09!15;CL:0000030!2.51e-09!15;CL:0000339!2.51e-09!15;CL:0000095!4.41e-08!17;CL:0000123!4.41e-08!17;CL:0000133!2.17e-07!59;CL:0002605!5.02e-07!3;CL:0000064!5.73e-07!3;CL:0005012!5.73e-07!3;CL:0000067!5.73e-07!3;CL:0002304!5.73e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000128;3.24e-35;7!CL:0000126;3.24e-35;7!CL:0000127;3.24e-35;7!CL:0002605;3.39e-22;3!CL:0000064;5.98e-22;3!CL:0000067;5.98e-22;3!CL:0005012;5.98e-22;3!CL:0002304;5.98e-22;3!CL:0002319;2.94e-19;25!CL:0000243;3.99e-19;15!CL:0000125;3.99e-19;15!CL:0000095;4.97e-17;17!CL:0002603;6.21e-10;3!CL:0000342;4.56e-08;1!CL:0002565;4.56e-08;1!CL:0000306;7.43e-08;4!CL:0002222;7.43e-08;4!CL:0002224;7.43e-08;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000128,4.37e-35,7;CL:0000126,4.37e-35,7;CL:0000127,4.37e-35,7;CL:0002453,4.37e-35,7;CL:0002605,3.78e-22,3;CL:0000064,6.21e-22,3;CL:0000067,6.21e-22,3;CL:0005012,6.21e-22,3;CL:0002304,6.21e-22,3;CL:0002319,3.05e-19,25;CL:0000243,4.17e-19,15;CL:0000125,4.17e-19,15;CL:0000030,4.17e-19,15;CL:0000339,4.17e-19,15;CL:0000095,5.16e-17,17;CL:0000123,5.16e-17,17;CL:0000133,3.92e-14,59;CL:0000221,2.90e-11,72;CL:0002603,5.68e-10,3;CL:0000342,6.24e-08,1;CL:0002565,6.24e-08,1;CL:0000306,7.97e-08,4;CL:0002222,7.97e-08,4;CL:0002224,7.97e-08,4;CL:0000333,4.62e-07,41 | |||
|ontology_enrichment_development_v019=CL:0000339;3.99e-19;15!CL:0000133;1.39e-09;59!UBERON:0009117;6.91e-07;10!UBERON:0005564;6.91e-07;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3493;7.83e-15;2!DOID:0050619;4.56e-08;1!DOID:1357;4.56e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,4.47e-15,2;DOID:0050619,5.43e-08,1;DOID:1357,5.43e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0005743!9.31e-48!86;UBERON:0003075!9.66e-46!86;UBERON:0007284!9.66e-46!86;UBERON:0002346!5.86e-43!90;UBERON:0001017!1.90e-42!82;UBERON:0000073!1.16e-41!94;UBERON:0001016!1.16e-41!94;UBERON:0001049!1.59e-36!57;UBERON:0005068!1.59e-36!57;UBERON:0006241!1.59e-36!57;UBERON:0007135!1.59e-36!57;UBERON:0000955!1.32e-34!69;UBERON:0006238!1.32e-34!69;UBERON:0000033!8.70e-34!123;UBERON:0002616!8.50e-33!59;UBERON:0000153!8.89e-33!129;UBERON:0007811!8.89e-33!129;UBERON:0003056!2.00e-32!61;UBERON:0004121!3.01e-30!169;UBERON:0000924!4.28e-29!173;UBERON:0006601!4.28e-29!173;UBERON:0002780!2.31e-26!41;UBERON:0001890!2.31e-26!41;UBERON:0006240!2.31e-26!41;UBERON:0002020!2.33e-26!34;UBERON:0003528!2.33e-26!34;UBERON:0001893!2.50e-26!34;UBERON:0001869!3.48e-26!32;UBERON:0003080!1.55e-25!42;UBERON:0002791!6.38e-25!33;UBERON:0000956!5.55e-22!25;UBERON:0000203!5.55e-22!25;UBERON:0007023!6.03e-21!115;UBERON:0002619!2.98e-17!22;UBERON:0001950!5.92e-17!20;UBERON:0007625!7.12e-13!11;UBERON:0003076!4.94e-12!15;UBERON:0003057!4.94e-12!15;UBERON:0004733!1.42e-10!12;UBERON:0002028!1.42e-10!12;UBERON:0007277!1.42e-10!12;UBERON:0001871!2.71e-10!7;UBERON:0004732!1.33e-09!13;UBERON:0000025!1.47e-09!194;UBERON:0000970!4.37e-09!20;UBERON:0002680!5.76e-09!9;UBERON:0001895!5.76e-09!9;UBERON:0010092!5.76e-09!9;UBERON:0000020!5.86e-09!23;UBERON:0001456!1.15e-08!21;UBERON:0000488!1.31e-08!4;UBERON:0002104!1.61e-08!21;UBERON:0001032!1.86e-08!24;UBERON:0004456!1.86e-08!24;UBERON:0000483!2.69e-08!309;UBERON:0000064!3.21e-08!219;UBERON:0000019!3.70e-08!19;UBERON:0000047!3.70e-08!19;UBERON:0004088!3.70e-08!19;UBERON:0003072!3.70e-08!19;UBERON:0003071!3.70e-08!19;UBERON:0004128!3.70e-08!19;UBERON:0000119!4.61e-08!312;UBERON:0000477!6.40e-08!286;UBERON:0000475!2.01e-07!365;UBERON:0000481!2.07e-07!347;UBERON:0000062!2.30e-07!511;UBERON:0004111!3.83e-07!241;UBERON:0000200!5.08e-07!6;UBERON:0001778!5.73e-07!3;UBERON:0001775!5.73e-07!3 | |||
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|phase1_expression=0,0,0,0,0,0.872338524100369,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35433163884467,0.816002764977012,1.25381888591235,6.5834277040143,3.14811177667634,3.38965126905968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0,0,0,0,0,3.21418378357831,3.54767035940102,3.33772185633879,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560677600142307,0,0.24666754841716,0.311211035399766,0,0,0.302714855289863,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0.10075209822764,0,0,0,0,0.121973706129595,0,0.116193942869518,0.414644220061482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02940686179115,0,0,0,0,0,0,0,3.014190529352,1.29149563659404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.28685161800217,0,0,0.502548796003046,1.27587750330633,0,0,0,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306923946576125,0,0,0.511707249066704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.769350375349168,0.328014645699706,0.650756789328606,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.320472213382419,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.6699314784893,0,0,0,0,0,0.994147647766298,0.703347082052564,0,0,1.05562704063997,0.19924798825107,0,0,1.02268682502155,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0.241192877250816,0,0.331737779793674,0,0.219385397153973,0.10893846351899,0,0,0,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0.489698424477443,0,5.19332735381019,0,0,0,0,0,0,0.269604531922708,0,0.234264445725339,0,0,0,0,0,0.61214552326098,0.063186579628488,0,0,0,0,0,0,0,0,0.347119476670262,0,0,0.34945333648406,0.687944129886466,0,0,0,0,0,0.225980740780532,0,0,0.633107959558787,0,0,0.426905989478705,0,0,4.58146384663663,0,0,0,0,0.407712618220842,0.313808538937,0,0,0,0,0,0,0,0.279282401272254,0.229160424011684,0,0.199679000498991,0,0,0.671834724867263,0,0,0,0,0,0,0,0,0.544813624446302,0.160753148465019,0.275078873194468,0,0,0,0.607495566580247,0,0.236417121897595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0.517131825446202,0.52893040697076,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,1.09937867375164,0,0.366078794705889,0.876336514945499,0,0.332787154610557,1.24192805882767,1.66018361923477,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.906823702049089,0.694567422971502,0,0,0,0,0,0,0,0,0.690860683462397,0,0.553033744606923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385375350578757,0,0.159633859057151,0.205116364240755,0,0.622415272177961,0.322951291263702,0,0,0,0,0,0,0,0,0,0,0,0,0.163771917510097,0,0.742913430802341,0,0.413373593002368,0.570742291745161,0.546974809018219,0.548257766857182,0,0,0,0,0,0,0.91064876540519,0,0,0,0.543757863814654,0.197318320688547,0,0,0,0.157115589916002,0,0,0,0,1.00067161847319,0,0,0,0,0,0,0,1.72090943528111,0,0,0,0.4582137370881,0,0,0,1.76670420507437,3.77945567445035,0,0,0,0,0,0,0,5.53435801990904,0,0,0,0,0,0,0,0.196308467114945,0.891139200981258,0,0,0,0,0,0,0,0,0,0,0,0,0.611923411718232,0.436350690340377,0,0,0,0,3.78499274505237,0.98339014767326,0,1.93778776509765,0.534434810531121,6.06506336929976,0,0,0,0,0.310298987585686,0,0.476128862927481,0,0,0,0.0636471582781649,0.606351566874658,0,0.342233301085281,0.0673520530145875,0.143444410785353,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p10@SHROOM3 | |||
}} |
Revision as of 11:47, 13 September 2013
Short description: | p10@SHROOM3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_10_at_SHROOM3_5end |
Coexpression cluster: | C1944_Astrocyte_Ciliary_Lens_colon_teratocarcinoma_gastric_Neural |
Association with transcript: | 19bp_to_ENST00000466541_5end |
EntrezGene: | SHROOM3 |
HGNC: | 30422 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
oligodendrocyte | 4.37e-35 | 7 |
macroglial cell | 4.37e-35 | 7 |
astrocyte | 4.37e-35 | 7 |
oligodendrocyte precursor cell | 4.37e-35 | 7 |
astrocyte of the cerebral cortex | 3.78e-22 | 3 |
ciliated cell | 6.21e-22 | 3 |
ciliated epithelial cell | 6.21e-22 | 3 |
multi-ciliated epithelial cell | 6.21e-22 | 3 |
non-pigmented ciliary epithelial cell | 6.21e-22 | 3 |
neural cell | 3.05e-19 | 25 |
glial cell (sensu Vertebrata) | 4.17e-19 | 15 |
glial cell | 4.17e-19 | 15 |
glioblast | 4.17e-19 | 15 |
glioblast (sensu Vertebrata) | 4.17e-19 | 15 |
neuron associated cell | 5.16e-17 | 17 |
neuron associated cell (sensu Vertebrata) | 5.16e-17 | 17 |
neurectodermal cell | 3.92e-14 | 59 |
ectodermal cell | 2.90e-11 | 72 |
astrocyte of the cerebellum | 5.68e-10 | 3 |
pigment cell (sensu Vertebrata) | 6.24e-08 | 1 |
iris pigment epithelial cell | 6.24e-08 | 1 |
crystallin accumulating cell | 7.97e-08 | 4 |
vertebrate lens cell | 7.97e-08 | 4 |
lens epithelial cell | 7.97e-08 | 4 |
migratory neural crest cell | 4.62e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 4.47e-15 | 2 |
paranasal sinus cancer | 5.43e-08 | 1 |
maxillary sinus cancer | 5.43e-08 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.