FFCP PHASE1:Mm9::chr15:75911363..75911374,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=67959|HGNC=|UniProt=Q3UEB3|association_with_transcript=1bp_to_ENSMUST00000002599,ENSMUST00000100527,NM_028364,NM_133691,uc007wij.2,uc007wik.2_5end|description=CAGE_peak_3_at_Puf60_5end|id=chr15:75911363..75911374,-|ontology_enrichment_celltype=CL:0000144!1.79e-16!121;CL:0000012!1.79e-16!121;CL:0000055!4.11e-16!50;CL:0000221!7.45e-16!44;CL:0000133!7.45e-16!44;CL:0002321!7.57e-16!70;CL:0000220!7.57e-16!70;CL:0000548!2.12e-15!115;CL:0000004!2.12e-15!115;CL:0000255!2.12e-15!115;CL:0002319!2.18e-15!43;CL:0002371!3.22e-15!118;CL:0000034!1.74e-12!97;CL:0000393!2.97e-11!39;CL:0000211!2.97e-11!39;CL:0000540!6.16e-11!33;CL:0000047!6.16e-11!33;CL:0000031!6.16e-11!33;CL:0000404!6.16e-11!33;CL:0000723!7.70e-11!91;CL:0000048!7.70e-11!91;CL:0000117!5.85e-09!23;CL:0000337!5.85e-09!23|ontology_enrichment_celltype_v019_2=CL:0002321,7.25e-16,70;CL:0000221,7.45e-16,44;CL:0000133,7.45e-16,44;CL:0002319,2.18e-15,43;CL:0000034,1.72e-12,97;CL:0000393,2.97e-11,39;CL:0000211,2.97e-11,39;CL:0000540,6.15e-11,33;CL:0000047,6.15e-11,33;CL:0000031,6.15e-11,33;CL:0000404,6.15e-11,33;CL:0000723,7.62e-11,91;CL:0000048,7.62e-11,91;CL:0000117,5.85e-09,23;CL:0000337,5.85e-09,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.10e-16!75;UBERON:0001016!1.10e-16!75;UBERON:0001017!4.05e-16!73;UBERON:0005743!4.05e-16!73;UBERON:0004121!4.74e-12!102;UBERON:0000924!4.74e-12!102;UBERON:0006601!4.74e-12!102;UBERON:0001049!3.38e-09!52;UBERON:0005068!3.38e-09!52;UBERON:0006241!3.38e-09!52;UBERON:0007135!3.38e-09!52;UBERON:0002346!6.38e-09!71;UBERON:0003075!6.38e-09!71;UBERON:0007284!6.38e-09!71;UBERON:0000955!4.93e-08!50;UBERON:0006238!4.93e-08!50;UBERON:0002616!7.93e-08!49;UBERON:0000033!7.99e-07!63|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.10e-16,75;UBERON:0001017,4.05e-16,73;UBERON:0004121,2.41e-11,95;UBERON:0000924,2.41e-11,95;UBERON:0006601,2.41e-11,95;UBERON:0000073,7.75e-10,54;UBERON:0001049,3.38e-09,52;UBERON:0005068,3.38e-09,52;UBERON:0006241,3.38e-09,52;UBERON:0007135,3.38e-09,52;UBERON:0002346,2.33e-08,64;UBERON:0003075,2.33e-08,64;UBERON:0007284,2.33e-08,64;UBERON:0000955,4.66e-07,47;UBERON:0006238,4.66e-07,47;UBERON:0002616,7.38e-07,46|phase1_expression=3.36312578920067,4.88565570695105,4.54999239389536,3.0246421130683,2.50447864973174,4.8684988854448,3.97141489012394,4.26106967357202,7.180224829735,8.42632294759177,6.16384685611818,3.27065851880879,3.42401459862411,3.4968160967599,1.66554880907831,1.61980213911861,3.49780939064073,2.68142840554502,1.64537320326887,2.97072756258621,5.78294373027274,2.58156473122302,4.96279599363977,2.23989391910769,2.75291137280604,2.8711598205751,3.4460959692726,3.878482188346,1.33016393619462,0.756090389279792,1.77384408524244,0.635030673459631,6.76571266343027,15.8481681015439,2.59966457776147,1.66234645358492,3.47087905646027,4.60384793810598,3.906676722619,2.09409497589519,9.41170380849623,4.78131839470912,6.79714494243615,4.65818226509636,4.96746962975621,5.13930906052708,6.25913075478431,8.72100625521786,7.46933021297204,6.02732687130279,4.4795654920116,14.3752564364972,4.69791296961662,4.35217285206807,4.36921938885203,4.88792928468299,2.57880095944881,3.6097046459421,6.87875966922632,9.52183762689659,5.07065122804943,13.2149367506962,7.11435836888911,2.6996991518442,2.96659908770092,4.9733608046227,10.1864037576258,12.6792040756113,3.00699875694585,3.78016627328734,4.6271491497304,8.2838785477103,9.718215801871,6.1245399607477,5.07980996396653,3.67687514644008,4.40463523997555,7.15049093277051,8.75557239560588,4.87979264601717,7.04454855738554,7.29278718779464,9.49222196604695,9.56696437053856,9.0150966188318,5.00868595305235,6.26435395516053,7.45597783301202,5.52801211332244,4.53429360640713,5.50742528533188,6.0229671388697,12.2394840067395,3.77792234146472,5.19821133958135,5.37632264516803,3.08977724289854,3.91989741929533,4.67614808285164,6.36011234118612,6.4787973097273,14.115912515575,0,7.11066703153331,2.38140145112336,4.05375784760158,4.04419556011827,2.51204535381932,1.29468941823586,3.26572705942614,5.03107447621794,3.34912026143355,4.15107895060905,5.27529241934179,3.64524992120685,4.02133092254962,3.95511948374998,2.74738778147832,3.5384422077995,3.39710384889559,1.98757366614354,3.39412677194655,3.72783522436244,4.9772735491963,3.77004072264219,1.27728527604296,4.19352935770721,1.79970819298022,2.92261522268049,5.39246301857362,5.03250663100489,5.02617408451458,2.9550134432687,4.60287823194595,6.85700547046548,2.59586020908412,1.93494791315601,1.99051152976149,3.0326731012041,1.47309299120532,4.42409506073193,4.82794419310293,4.32149111532838,4.21973489940002,2.38127747029647,1.7935920839879,2.15513966487376,3.88055056108524,4.74249584452253,3.59301552318857,3.16712023495108,5.2606975782618,2.78047249225598,3.48252166522167,2.05782136407943,5.9710280045548,3.51106593656617,2.05878325691772,2.27330799516474,3.31401236056803,2.81431271977315,4.68161359798639,2.84093682702252,3.14822770795846,3.23960937063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| ||
|EntrezGene=67959 | |||
|HGNC= | |||
|UniProt=Q3UEB3 | |||
|association_with_transcript=1bp_to_ENSMUST00000002599,ENSMUST00000100527,NM_028364,NM_133691,uc007wij.2,uc007wik.2_5end | |||
|description=CAGE_peak_3_at_Puf60_5end | |||
|id=chr15:75911363..75911374,- | |||
|ontology_enrichment_celltype=CL:0000144!1.79e-16!121;CL:0000012!1.79e-16!121;CL:0000055!4.11e-16!50;CL:0000221!7.45e-16!44;CL:0000133!7.45e-16!44;CL:0002321!7.57e-16!70;CL:0000220!7.57e-16!70;CL:0000548!2.12e-15!115;CL:0000004!2.12e-15!115;CL:0000255!2.12e-15!115;CL:0002319!2.18e-15!43;CL:0002371!3.22e-15!118;CL:0000034!1.74e-12!97;CL:0000393!2.97e-11!39;CL:0000211!2.97e-11!39;CL:0000540!6.16e-11!33;CL:0000047!6.16e-11!33;CL:0000031!6.16e-11!33;CL:0000404!6.16e-11!33;CL:0000723!7.70e-11!91;CL:0000048!7.70e-11!91;CL:0000117!5.85e-09!23;CL:0000337!5.85e-09!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,7.25e-16,70;CL:0000221,7.45e-16,44;CL:0000133,7.45e-16,44;CL:0002319,2.18e-15,43;CL:0000034,1.72e-12,97;CL:0000393,2.97e-11,39;CL:0000211,2.97e-11,39;CL:0000540,6.15e-11,33;CL:0000047,6.15e-11,33;CL:0000031,6.15e-11,33;CL:0000404,6.15e-11,33;CL:0000723,7.62e-11,91;CL:0000048,7.62e-11,91;CL:0000117,5.85e-09,23;CL:0000337,5.85e-09,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.10e-16!75;UBERON:0001016!1.10e-16!75;UBERON:0001017!4.05e-16!73;UBERON:0005743!4.05e-16!73;UBERON:0004121!4.74e-12!102;UBERON:0000924!4.74e-12!102;UBERON:0006601!4.74e-12!102;UBERON:0001049!3.38e-09!52;UBERON:0005068!3.38e-09!52;UBERON:0006241!3.38e-09!52;UBERON:0007135!3.38e-09!52;UBERON:0002346!6.38e-09!71;UBERON:0003075!6.38e-09!71;UBERON:0007284!6.38e-09!71;UBERON:0000955!4.93e-08!50;UBERON:0006238!4.93e-08!50;UBERON:0002616!7.93e-08!49;UBERON:0000033!7.99e-07!63 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.10e-16,75;UBERON:0001017,4.05e-16,73;UBERON:0004121,2.41e-11,95;UBERON:0000924,2.41e-11,95;UBERON:0006601,2.41e-11,95;UBERON:0000073,7.75e-10,54;UBERON:0001049,3.38e-09,52;UBERON:0005068,3.38e-09,52;UBERON:0006241,3.38e-09,52;UBERON:0007135,3.38e-09,52;UBERON:0002346,2.33e-08,64;UBERON:0003075,2.33e-08,64;UBERON:0007284,2.33e-08,64;UBERON:0000955,4.66e-07,47;UBERON:0006238,4.66e-07,47;UBERON:0002616,7.38e-07,46 | |||
|phase1_expression=3.36312578920067,4.88565570695105,4.54999239389536,3.0246421130683,2.50447864973174,4.8684988854448,3.97141489012394,4.26106967357202,7.180224829735,8.42632294759177,6.16384685611818,3.27065851880879,3.42401459862411,3.4968160967599,1.66554880907831,1.61980213911861,3.49780939064073,2.68142840554502,1.64537320326887,2.97072756258621,5.78294373027274,2.58156473122302,4.96279599363977,2.23989391910769,2.75291137280604,2.8711598205751,3.4460959692726,3.878482188346,1.33016393619462,0.756090389279792,1.77384408524244,0.635030673459631,6.76571266343027,15.8481681015439,2.59966457776147,1.66234645358492,3.47087905646027,4.60384793810598,3.906676722619,2.09409497589519,9.41170380849623,4.78131839470912,6.79714494243615,4.65818226509636,4.96746962975621,5.13930906052708,6.25913075478431,8.72100625521786,7.46933021297204,6.02732687130279,4.4795654920116,14.3752564364972,4.69791296961662,4.35217285206807,4.36921938885203,4.88792928468299,2.57880095944881,3.6097046459421,6.87875966922632,9.52183762689659,5.07065122804943,13.2149367506962,7.11435836888911,2.6996991518442,2.96659908770092,4.9733608046227,10.1864037576258,12.6792040756113,3.00699875694585,3.78016627328734,4.6271491497304,8.2838785477103,9.718215801871,6.1245399607477,5.07980996396653,3.67687514644008,4.40463523997555,7.15049093277051,8.75557239560588,4.87979264601717,7.04454855738554,7.29278718779464,9.49222196604695,9.56696437053856,9.0150966188318,5.00868595305235,6.26435395516053,7.45597783301202,5.52801211332244,4.53429360640713,5.50742528533188,6.0229671388697,12.2394840067395,3.77792234146472,5.19821133958135,5.37632264516803,3.08977724289854,3.91989741929533,4.67614808285164,6.36011234118612,6.4787973097273,14.115912515575,0,7.11066703153331,2.38140145112336,4.05375784760158,4.04419556011827,2.51204535381932,1.29468941823586,3.26572705942614,5.03107447621794,3.34912026143355,4.15107895060905,5.27529241934179,3.64524992120685,4.02133092254962,3.95511948374998,2.74738778147832,3.5384422077995,3.39710384889559,1.98757366614354,3.39412677194655,3.72783522436244,4.9772735491963,3.77004072264219,1.27728527604296,4.19352935770721,1.79970819298022,2.92261522268049,5.39246301857362,5.03250663100489,5.02617408451458,2.9550134432687,4.60287823194595,6.85700547046548,2.59586020908412,1.93494791315601,1.99051152976149,3.0326731012041,1.47309299120532,4.42409506073193,4.82794419310293,4.32149111532838,4.21973489940002,2.38127747029647,1.7935920839879,2.15513966487376,3.88055056108524,4.74249584452253,3.59301552318857,3.16712023495108,5.2606975782618,2.78047249225598,3.48252166522167,2.05782136407943,5.9710280045548,3.51106593656617,2.05878325691772,2.27330799516474,3.31401236056803,2.81431271977315,4.68161359798639,2.84093682702252,3.14822770795846,3.23960937063494,1.86027155800326,2.95100741539581,2.45207218971056,2.13927804887525,2.13417703302824,2.51313309592153,3.21639972335731,1.75640092232841,0.939444931322602,2.73376933133365,2.98423375899925,2.64335026387038,2.11560453330835,3.83918850963421,2.55460339046482,2.57734922644187,2.8235693447268,1.11189021922435,2.28270751335071,2.37264530772256,1.31759163779209,1.00534083520108,2.58643413653496,1.9496408711912,0.898819408654221,1.29682829924817,2.19055400579804,5.69003702859245,3.19895835307241,3.38123207019241,2.64746726198909,3.29719228184964,2.45475369616115,2.21327879934901,1.32849133181642,2.35498091762062,2.09775178667061,3.55743152504579,3.50374722003798,1.96558995113203,1.79889689907883,1.82574109249653,3.37648023653384,2.03700681425136,2.5892652370573,2.2698931748505,2.19649130550465,2.87536413054709,3.34926852901653,1.87222603868736,3.03094653536534,4.30553792452589,1.92977408545347,3.69506380333209,6.06372517665551,4.23708938749267,4.2436271443797,2.58159273117352,2.34508760418542,2.14239276797412,2.34160377429359,1.89162172927429,2.21464689648775,3.18909537314974,2.62181303545181,3.7990696010497,2.4590339958857,1.50791283939272,4.35124547054968,1.96705709207614,1.93155722413313,4.97706828962155,7.501547941901,2.45902418065013,1.00988370881749,4.73262329124385,5.46614242015294,4.30846795465598,6.4521575447189,4.45597348164788,4.81230102341015,4.45291771842384,5.84511715822624,7.11518000303742,4.81981974632711,2.41298144854057,3.02711526234334,2.11753047159649,2.8044920905331,3.98235415019888,4.61283208694465,4.83717691143602,2.64047111658257,2.95301892880773,2.76691633149535,1.55056975900933,0.727067458955011,2.13898427030833,2.21225730555071,4.21674434299995,4.12542172992747,2.7235168460303,4.86164953884538,5.43306471887569,5.5727629108214,2.48276327099183,3.0322698992352,4.77192159746151,6.69822888052118,3.28540391289194,4.44847348814022,2.20528398054962,2.4732937941222,1.29171541356724,1.68876189798836,2.14870219205646,2.1338316966858,1.45740418314925,6.86073617438886,3.2465467351592,2.68302928352189,2.22233432843654,1.13021074202815,2.46049609897845,1.83022538565218,5.09935289981566,7.55737842547753,5.8043988997858,0.954670618015114,5.06137589729817,3.86306987541013,1.94409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| |||
|short_description=p3@Puf60 | |||
}} |
Revision as of 10:56, 13 September 2013
Short description: | p3@Puf60 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Puf60_5end |
Coexpression cluster: | NA |
Association with transcript: | 1bp_to_ENSMUST00000002599, ENSMUST00000100527, NM_028364, NM_133691, uc007wij.2, uc007wik.2_5end |
EntrezGene: | Puf60 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 7.25e-16 | 70 |
ectodermal cell | 7.45e-16 | 44 |
neurectodermal cell | 7.45e-16 | 44 |
neural cell | 2.18e-15 | 43 |
stem cell | 1.72e-12 | 97 |
electrically responsive cell | 2.97e-11 | 39 |
electrically active cell | 2.97e-11 | 39 |
neuron | 6.15e-11 | 33 |
neuronal stem cell | 6.15e-11 | 33 |
neuroblast | 6.15e-11 | 33 |
electrically signaling cell | 6.15e-11 | 33 |
somatic stem cell | 7.62e-11 | 91 |
multi fate stem cell | 7.62e-11 | 91 |
CNS neuron (sensu Vertebrata) | 5.85e-09 | 23 |
neuroblast (sensu Vertebrata) | 5.85e-09 | 23 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.10e-16 | 75 |
central nervous system | 4.05e-16 | 73 |
ectoderm-derived structure | 2.41e-11 | 95 |
ectoderm | 2.41e-11 | 95 |
presumptive ectoderm | 2.41e-11 | 95 |
regional part of nervous system | 7.75e-10 | 54 |
neural tube | 3.38e-09 | 52 |
neural rod | 3.38e-09 | 52 |
future spinal cord | 3.38e-09 | 52 |
neural keel | 3.38e-09 | 52 |
neurectoderm | 2.33e-08 | 64 |
neural plate | 2.33e-08 | 64 |
presumptive neural plate | 2.33e-08 | 64 |
brain | 4.66e-07 | 47 |
future brain | 4.66e-07 | 47 |
regional part of brain | 7.38e-07 | 46 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.