FFCP PHASE1:Mm9::chr15:73253656..73253669,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=14083|HGNC=|UniProt=P34152,F8WI77,E9QMQ8|association_with_transcript=-35bp_to_ENSMUST00000057684,ENSMUST00000068756,ENSMUST00000080736,ENSMUST00000110033,ENSMUST00000110036,ENSMUST00000170939,NM_001130409,NM_007982,uc007wbw.2,uc007wbx.2,uc007wbz.2,uc007wca.1,uc011ztu.1_5end|description=CAGE_peak_4_at_Ptk2_5end|id=chr15:73253656..73253669,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000956!8.80e-12!21;UBERON:0001869!8.80e-12!21;UBERON:0000203!8.80e-12!21;UBERON:0002619!1.70e-09!17;UBERON:0002791!1.74e-09!29;UBERON:0003528!1.74e-09!29;UBERON:0001893!1.74e-09!29;UBERON:0003056!2.49e-09!49;UBERON:0002020!3.96e-09!34;UBERON:0002780!4.40e-09!39;UBERON:0001890!4.40e-09!39;UBERON:0006240!4.40e-09!39;UBERON:0003080!1.02e-08!40;UBERON:0002021!1.19e-07!10;UBERON:0000411!1.19e-07!10;UBERON:0001950!1.19e-07!10;UBERON:0004121!5.56e-07!102;UBERON:0000924!5.56e-07!102;UBERON:0006601!5.56e-07!102;UBERON:0000033!5.78e-07!63|ontology_enrichment_uberon_v019_2=UBERON:0000956,7.89e-15,21;UBERON:0001869,7.89e-15,21;UBERON:0000203,7.89e-15,21;UBERON:0003528,2.91e-12,29;UBERON:0002791,2.91e-12,29;UBERON:0001893,2.91e-12,29;UBERON:0002619,1.53e-11,17;UBERON:0002020,2.84e-11,34;UBERON:0002021,1.79e-10,10;UBERON:0000411,1.79e-10,10;UBERON:0001950,1.79e-10,10;UBERON:0002780,1.88e-09,39;UBERON:0001890,1.88e-09,39;UBERON:0006240,1.88e-09,39;UBERON:0003080,5.37e-09,40;UBERON:0003056,1.14e-08,49;UBERON:0000955,3.00e-07,47;UBERON:0006238,3.00e-07,47;UBERON:0010314,5.28e-07,92;UBERON:0002346,7.36e-07,64;UBERON:0003075,7.36e-07,64;UBERON:0007284,7.36e-07,64;UBERON:0002616,9.79e-07,46|phase1_expression=0.320297694209588,0,0,0.90739263392049,0,1.00727563147134,0.467225281191051,0.129123323441576,0,0.234064526321993,0,0.0797721589953364,0,0.34968160967599,0,0.607425802169478,0,0.315462165358238,0.137114433605739,0,0.595303031057488,0,0,0.799962113967033,0.45881856213434,0,0,0.861884930743556,0.760093677825496,0,0.443461021310609,2.54012269383853,0,0,0.288851619751275,0.664938581433969,0.612508068787107,0,0,0,0,0,0,0.251793635951155,0.912392380975631,0.367093504323363,0,0.436050312760893,0.659058548203415,0.972149495371417,0.699932108126813,0,0.167782606057736,0,0.336093799142464,1.28629718017973,0.286533439938757,1.03134418455488,1.21389876515759,0.528990979272033,0,0.677689064138264,0.889294796111139,0.449949858640699,0,0,0.599200221036809,0,2.7996195323289,2.97013064329719,2.52389953621658,0.571301968807607,0.441737081903227,1.71487118900936,1.62937300731002,5.51531271966013,0,1.53224805702225,0.768032666281217,0.527545150920775,0.548925861614458,0,0.279182999001381,1.68828783009504,0.45839474333043,0.589257170947335,1.56608848879013,1.3047961207771,0.302904773332736,0.604572480854284,1.44932244350839,0,1.3599426674155,0.539703191637817,1.29955283489534,0,0.421333260395256,0.511290967734173,1.03914401841148,0.70667914902068,1.12674735821344,1.28326477414318,2.54805239706646,0,0.216491041011214,1.01343946190039,0.505524445014783,0.34255163915718,0.517875767294343,0.29688427812965,1.38788261412909,0.304465478312141,0.230615497256059,0.301445281105245,0.940709657085638,0.376999773989026,1.23597483867187,0.433798070759735,0,0.485300549842228,1.32504911076236,0,0,0.292780797011547,0,0.510914110417183,0.11981512450592,0.599902730993408,0,0.449371918214468,1.83000241127451,1.38219787324151,1.56441888173049,2.30143911597297,0.20778804455956,0.811206315338788,0.81471491080253,0.373220911830279,0.252722758433675,0.631325567659422,1.56144531555244,0.919608417733892,0.900310649026746,0.60281927134286,1.15662048557257,1.66547836370305,1.49922759295566,0.258703370739016,1.29340795759705,1.89106080167819,1.58356011747554,0.657587197282725,0.556094498451196,1.39300866608867,1.64625709126355,1.79130840136644,0,0,0,2.07125772535502,1.17263029990548,1.62055855314913,1.18372367792605,1.18058539048442,1.07986979021165,0.930135779001631,1.87791380979733,1.05088808130453,0.822799249567402,0.985004784474571,0.648550476366846,0.438599962275997,1.09775057645525,0.268412837520744,1.47202963994889,1.85228302282712,0.330418782983798,0.528901133327089,0.426576501070468,1.16118335930219,1.28867461322093,0.403367049246685,1.11189021922435,0.760902504450237,0.474529061544512,0.164698954724011,0.754005626400808,0.198956472041151,0.38992817423824,0,1.29682829924817,0,0.379335801906163,1.82797620175566,4.50830942692322,2.03651327845314,0.775809948670503,1.68325967736765,1.58091342810643,0.442830443938806,1.09899109488962,0.370191491765402,0.296452627087149,0.667380422864376,0.196558995113203,0.449724224769707,0.811440485554012,0.482354319504834,0.25462585178142,0,0.486405680325106,0.823684239564244,1.43768206527355,0.744281895337007,0.936113019343682,0.505157755894224,0.896987067609561,0,1.84753190166605,0.947457058852424,1.79261474086228,0.678980343100753,0.704070744865506,1.17254380209271,1.19021820443007,0.390267295715598,1.41871629695572,0.221464689648775,1.59454768657487,2.29408640602033,1.20879487306127,0.723245292907558,0,0,0.983528546038072,2.48343071674259,0.642202359951168,0.586058432961016,0.327869890753351,0.252470927204373,1.26203287766503,0.780877488593277,2.15423397732799,0.477937595905104,1.11399337041197,2.54768877709949,0.809621403349789,2.04579100537918,1.97643888973262,1.92792789853084,0.709700426041343,0.35613120733451,1.30309567482861,0.494910368917606,0,0.728341908464944,0.604647113929502,0.377210159511796,0.295301892880773,0.614870295887855,0.516856586336442,1.09060118843252,0.356497378384721,0.632073515871632,0,0,0.680879211507576,0.720244376125241,0.517434735131018,0.857348140126369,1.06404140185364,1.78368817602071,1.31639216481697,0.913394847343798,0.704015124191131,1.0591603543191,0.441056796109924,0.98931751764888,1.29171541356724,0.603129249281559,0.596861720015682,0.492422699235184,0.582961673259701,0.556275906031529,0,0.619160603889667,0.925972636848558,0.188368457004691,0.410082683163076,0.457556346413045,0.169978429993855,0.279902904647316,0.276399947608848,0,1.58167996790568,0.813277868507395,0.86404272657441,0.209088296014469,1.31017538247707,0.269728692769641,0.743881101528023,0.785267825952089,1.42576470620972,1.24267862617385,0.56369293868419,0.897099276263873,1.98550188548517,1.16670713006429,0.904118764344118,0.506868376472335,0.821500670520278,0.781226309063701,1.8874681996628,0.724752362478018,0.576060012515731,0,1.21635129174099,0.513554785824136,0,0.537080087002444,0.198681354781265,0.360586348559907,0.147689527174577,0.605798699688886,0.228620419965,0.201652370273681,0,0,0.233753804363138,0.226730383615211,2.21985953374065,1.07656627931371,3.8613461763738,0,1.12609485270709,0.915758121336325,0.428736758158132,0.501572104035363,3.95326289831947,2.76195141904306,1.71868654031819,3.43706364687375,2.05524755931193,3.7769694869485,5.40018000185445,4.05289082901798,2.71885445390523,2.07104124700728,1.14166082342594,0.399024873401031,0.341467211508268,0.972426868273176,0.209613162627982,0.735374033800057,1.55572709461131,0.618105171716683,0.320919209591815,0.505394423527595,0.760437899670719,0.943131706930381,1.12369808963859,1.28050304809739,1.09127391015665,1.42888107384922,1.0429589335037,0.578727661391115,0.412085900803307,0.883193520806384,0.342869252385415,0.177475806159338,0.476872379894642,0.581385666529314,0.658765662907314,1.09998990259179,0.548783918618318,1.57841826862706,0.679020569229309,1.12228454331548,1.30498519936592,0.689531376628944,1.63692417267876,0.154936841185966,0.192906610981141,0.999242311751784,2.10538447600868,1.07435527024149,1.14772999241306,0.441182838239031,0.231867835620421|short_description=p4@Ptk2}} | ||
|EntrezGene=14083 | |||
|HGNC= | |||
|UniProt=P34152,F8WI77,E9QMQ8 | |||
|association_with_transcript=-35bp_to_ENSMUST00000057684,ENSMUST00000068756,ENSMUST00000080736,ENSMUST00000110033,ENSMUST00000110036,ENSMUST00000170939,NM_001130409,NM_007982,uc007wbw.2,uc007wbx.2,uc007wbz.2,uc007wca.1,uc011ztu.1_5end | |||
|description=CAGE_peak_4_at_Ptk2_5end | |||
|id=chr15:73253656..73253669,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000956!8.80e-12!21;UBERON:0001869!8.80e-12!21;UBERON:0000203!8.80e-12!21;UBERON:0002619!1.70e-09!17;UBERON:0002791!1.74e-09!29;UBERON:0003528!1.74e-09!29;UBERON:0001893!1.74e-09!29;UBERON:0003056!2.49e-09!49;UBERON:0002020!3.96e-09!34;UBERON:0002780!4.40e-09!39;UBERON:0001890!4.40e-09!39;UBERON:0006240!4.40e-09!39;UBERON:0003080!1.02e-08!40;UBERON:0002021!1.19e-07!10;UBERON:0000411!1.19e-07!10;UBERON:0001950!1.19e-07!10;UBERON:0004121!5.56e-07!102;UBERON:0000924!5.56e-07!102;UBERON:0006601!5.56e-07!102;UBERON:0000033!5.78e-07!63 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000956,7.89e-15,21;UBERON:0001869,7.89e-15,21;UBERON:0000203,7.89e-15,21;UBERON:0003528,2.91e-12,29;UBERON:0002791,2.91e-12,29;UBERON:0001893,2.91e-12,29;UBERON:0002619,1.53e-11,17;UBERON:0002020,2.84e-11,34;UBERON:0002021,1.79e-10,10;UBERON:0000411,1.79e-10,10;UBERON:0001950,1.79e-10,10;UBERON:0002780,1.88e-09,39;UBERON:0001890,1.88e-09,39;UBERON:0006240,1.88e-09,39;UBERON:0003080,5.37e-09,40;UBERON:0003056,1.14e-08,49;UBERON:0000955,3.00e-07,47;UBERON:0006238,3.00e-07,47;UBERON:0010314,5.28e-07,92;UBERON:0002346,7.36e-07,64;UBERON:0003075,7.36e-07,64;UBERON:0007284,7.36e-07,64;UBERON:0002616,9.79e-07,46 | |||
|phase1_expression=0.320297694209588,0,0,0.90739263392049,0,1.00727563147134,0.467225281191051,0.129123323441576,0,0.234064526321993,0,0.0797721589953364,0,0.34968160967599,0,0.607425802169478,0,0.315462165358238,0.137114433605739,0,0.595303031057488,0,0,0.799962113967033,0.45881856213434,0,0,0.861884930743556,0.760093677825496,0,0.443461021310609,2.54012269383853,0,0,0.288851619751275,0.664938581433969,0.612508068787107,0,0,0,0,0,0,0.251793635951155,0.912392380975631,0.367093504323363,0,0.436050312760893,0.659058548203415,0.972149495371417,0.699932108126813,0,0.167782606057736,0,0.336093799142464,1.28629718017973,0.286533439938757,1.03134418455488,1.21389876515759,0.528990979272033,0,0.677689064138264,0.889294796111139,0.449949858640699,0,0,0.599200221036809,0,2.7996195323289,2.97013064329719,2.52389953621658,0.571301968807607,0.441737081903227,1.71487118900936,1.62937300731002,5.51531271966013,0,1.53224805702225,0.768032666281217,0.527545150920775,0.548925861614458,0,0.279182999001381,1.68828783009504,0.45839474333043,0.589257170947335,1.56608848879013,1.3047961207771,0.302904773332736,0.604572480854284,1.44932244350839,0,1.3599426674155,0.539703191637817,1.29955283489534,0,0.421333260395256,0.511290967734173,1.03914401841148,0.70667914902068,1.12674735821344,1.28326477414318,2.54805239706646,0,0.216491041011214,1.01343946190039,0.505524445014783,0.34255163915718,0.517875767294343,0.29688427812965,1.38788261412909,0.304465478312141,0.230615497256059,0.301445281105245,0.940709657085638,0.376999773989026,1.23597483867187,0.433798070759735,0,0.485300549842228,1.32504911076236,0,0,0.292780797011547,0,0.510914110417183,0.11981512450592,0.599902730993408,0,0.449371918214468,1.83000241127451,1.38219787324151,1.56441888173049,2.30143911597297,0.20778804455956,0.811206315338788,0.81471491080253,0.373220911830279,0.252722758433675,0.631325567659422,1.56144531555244,0.919608417733892,0.900310649026746,0.60281927134286,1.15662048557257,1.66547836370305,1.49922759295566,0.258703370739016,1.29340795759705,1.89106080167819,1.58356011747554,0.657587197282725,0.556094498451196,1.39300866608867,1.64625709126355,1.79130840136644,0,0,0,2.07125772535502,1.17263029990548,1.62055855314913,1.18372367792605,1.18058539048442,1.07986979021165,0.930135779001631,1.87791380979733,1.05088808130453,0.822799249567402,0.985004784474571,0.648550476366846,0.438599962275997,1.09775057645525,0.268412837520744,1.47202963994889,1.85228302282712,0.330418782983798,0.528901133327089,0.426576501070468,1.16118335930219,1.28867461322093,0.403367049246685,1.11189021922435,0.760902504450237,0.474529061544512,0.164698954724011,0.754005626400808,0.198956472041151,0.38992817423824,0,1.29682829924817,0,0.379335801906163,1.82797620175566,4.50830942692322,2.03651327845314,0.775809948670503,1.68325967736765,1.58091342810643,0.442830443938806,1.09899109488962,0.370191491765402,0.296452627087149,0.667380422864376,0.196558995113203,0.449724224769707,0.811440485554012,0.482354319504834,0.25462585178142,0,0.486405680325106,0.823684239564244,1.43768206527355,0.744281895337007,0.936113019343682,0.505157755894224,0.896987067609561,0,1.84753190166605,0.947457058852424,1.79261474086228,0.678980343100753,0.704070744865506,1.17254380209271,1.19021820443007,0.390267295715598,1.41871629695572,0.221464689648775,1.59454768657487,2.29408640602033,1.20879487306127,0.723245292907558,0,0,0.983528546038072,2.48343071674259,0.642202359951168,0.586058432961016,0.327869890753351,0.252470927204373,1.26203287766503,0.780877488593277,2.15423397732799,0.477937595905104,1.11399337041197,2.54768877709949,0.809621403349789,2.04579100537918,1.97643888973262,1.92792789853084,0.709700426041343,0.35613120733451,1.30309567482861,0.494910368917606,0,0.728341908464944,0.604647113929502,0.377210159511796,0.295301892880773,0.614870295887855,0.516856586336442,1.09060118843252,0.356497378384721,0.632073515871632,0,0,0.680879211507576,0.720244376125241,0.517434735131018,0.857348140126369,1.06404140185364,1.78368817602071,1.31639216481697,0.913394847343798,0.704015124191131,1.0591603543191,0.441056796109924,0.98931751764888,1.29171541356724,0.603129249281559,0.596861720015682,0.492422699235184,0.582961673259701,0.556275906031529,0,0.619160603889667,0.925972636848558,0.188368457004691,0.410082683163076,0.457556346413045,0.169978429993855,0.279902904647316,0.276399947608848,0,1.58167996790568,0.813277868507395,0.86404272657441,0.209088296014469,1.31017538247707,0.269728692769641,0.743881101528023,0.785267825952089,1.42576470620972,1.24267862617385,0.56369293868419,0.897099276263873,1.98550188548517,1.16670713006429,0.904118764344118,0.506868376472335,0.821500670520278,0.781226309063701,1.8874681996628,0.724752362478018,0.576060012515731,0,1.21635129174099,0.513554785824136,0,0.537080087002444,0.198681354781265,0.360586348559907,0.147689527174577,0.605798699688886,0.228620419965,0.201652370273681,0,0,0.233753804363138,0.226730383615211,2.21985953374065,1.07656627931371,3.8613461763738,0,1.12609485270709,0.915758121336325,0.428736758158132,0.501572104035363,3.95326289831947,2.76195141904306,1.71868654031819,3.43706364687375,2.05524755931193,3.7769694869485,5.40018000185445,4.05289082901798,2.71885445390523,2.07104124700728,1.14166082342594,0.399024873401031,0.341467211508268,0.972426868273176,0.209613162627982,0.735374033800057,1.55572709461131,0.618105171716683,0.320919209591815,0.505394423527595,0.760437899670719,0.943131706930381,1.12369808963859,1.28050304809739,1.09127391015665,1.42888107384922,1.0429589335037,0.578727661391115,0.412085900803307,0.883193520806384,0.342869252385415,0.177475806159338,0.476872379894642,0.581385666529314,0.658765662907314,1.09998990259179,0.548783918618318,1.57841826862706,0.679020569229309,1.12228454331548,1.30498519936592,0.689531376628944,1.63692417267876,0.154936841185966,0.192906610981141,0.999242311751784,2.10538447600868,1.07435527024149,1.14772999241306,0.441182838239031,0.231867835620421 | |||
|short_description=p4@Ptk2 | |||
}} |
Revision as of 10:49, 13 September 2013
Short description: | p4@Ptk2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Ptk2_5end |
Coexpression cluster: | NA |
Association with transcript: | -35bp_to_ENSMUST00000057684, ENSMUST00000068756, ENSMUST00000080736, ENSMUST00000110033, ENSMUST00000110036, ENSMUST00000170939, NM_001130409, NM_007982, uc007wbw.2, uc007wbx.2, uc007wbz.2, uc007wca.1, uc011ztu.1_5end |
EntrezGene: | Ptk2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cerebral cortex | 7.89e-15 | 21 |
cerebral hemisphere | 7.89e-15 | 21 |
pallium | 7.89e-15 | 21 |
brain grey matter | 2.91e-12 | 29 |
regional part of telencephalon | 2.91e-12 | 29 |
telencephalon | 2.91e-12 | 29 |
regional part of cerebral cortex | 1.53e-11 | 17 |
gray matter | 2.84e-11 | 34 |
occipital lobe | 1.79e-10 | 10 |
visual cortex | 1.79e-10 | 10 |
neocortex | 1.79e-10 | 10 |
regional part of forebrain | 1.88e-09 | 39 |
forebrain | 1.88e-09 | 39 |
future forebrain | 1.88e-09 | 39 |
anterior neural tube | 5.37e-09 | 40 |
pre-chordal neural plate | 1.14e-08 | 49 |
brain | 3.00e-07 | 47 |
future brain | 3.00e-07 | 47 |
structure with developmental contribution from neural crest | 5.28e-07 | 92 |
neurectoderm | 7.36e-07 | 64 |
neural plate | 7.36e-07 | 64 |
presumptive neural plate | 7.36e-07 | 64 |
regional part of brain | 9.79e-07 | 46 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.