FFCP PHASE1:Mm9::chr15:102156563..102156583,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=56612|HGNC=|MCL_coexpression_id=0|UniProt=E9PVG3|association_with_transcript=0bp_to_ENSMUST00000062492_5end|description=CAGE_peak_1_at_Pfdn5_5end|id=chr15:102156563..102156583,+|ontology_enrichment_celltype=CL:0000055!1.49e-15!50;CL:0000221!2.06e-13!44;CL:0000133!2.06e-13!44;CL:0002319!2.15e-13!43;CL:0000393!1.39e-11!39;CL:0000211!1.39e-11!39;CL:0000117!5.00e-11!23;CL:0000337!5.00e-11!23;CL:0002321!9.83e-11!70;CL:0000220!9.83e-11!70;CL:0000540!5.45e-10!33;CL:0000047!5.45e-10!33;CL:0000031!5.45e-10!33;CL:0000404!5.45e-10!33;CL:0002371!1.24e-08!118;CL:0000144!1.05e-07!121;CL:0000012!1.05e-07!121;CL:0000723!1.18e-07!91;CL:0000048!1.18e-07!91;CL:0000548!1.62e-07!115;CL:0000004!1.62e-07!115;CL:0000255!1.62e-07!115|ontology_enrichment_celltype_v019_2=CL:0000221,2.06e-13,44;CL:0000133,2.06e-13,44;CL:0002319,2.15e-13,43;CL:0000393,1.39e-11,39;CL:0000211,1.39e-11,39;CL:0000117,5.00e-11,23;CL:0000337,5.00e-11,23;CL:0002321,9.83e-11,70;CL:0000540,5.45e-10,33;CL:0000047,5.45e-10,33;CL:0000031,5.45e-10,33;CL:0000404,5.45e-10,33;CL:0000723,1.18e-07,91;CL:0000048,1.18e-07,91|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!5.24e-19!73;UBERON:0005743!5.24e-19!73;UBERON:0000073!1.69e-18!75;UBERON:0001016!1.69e-18!75;UBERON:0002346!6.01e-15!71;UBERON:0003075!6.01e-15!71;UBERON:0007284!6.01e-15!71;UBERON:0001049!8.15e-15!52;UBERON:0005068!8.15e-15!52;UBERON:0006241!8.15e-15!52;UBERON:0007135!8.15e-15!52;UBERON:0004121!1.35e-14!102;UBERON:0000924!1.35e-14!102;UBERON:0006601!1.35e-14!102;UBERON:0002020!9.33e-14!34;UBERON:0002616!2.63e-13!49;UBERON:0000955!3.08e-13!50;UBERON:0006238!3.08e-13!50;UBERON:0000033!8.51e-13!63;UBERON:0002791!1.28e-11!29;UBERON:0003528!1.28e-11!29;UBERON:0001893!1.28e-11!29;UBERON:0003080!3.19e-11!40;UBERON:0002780!5.97e-11!39;UBERON:0001890!5.97e-11!39;UBERON:0006240!5.97e-11!39;UBERON:0003056!7.55e-11!49;UBERON:0000956!4.01e-08!21;UBERON:0001869!4.01e-08!21;UBERON:0000203!4.01e-08!21;UBERON:0002619!3.41e-07!17;UBERON:0000025!3.77e-07!114;UBERON:0004111!4.43e-07!122|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.24e-19,73;UBERON:0001016,1.69e-18,75;UBERON:0010314,5.44e-17,92;UBERON:0000073,1.77e-15,54;UBERON:0001049,8.15e-15,52;UBERON:0005068,8.15e-15,52;UBERON:0006241,8.15e-15,52;UBERON:0007135,8.15e-15,52;UBERON:0002346,8.99e-15,64;UBERON:0003075,8.99e-15,64;UBERON:0007284,8.99e-15,64;UBERON:0004121,4.03e-14,95;UBERON:0000924,4.03e-14,95;UBERON:0006601,4.03e-14,95;UBERON:0002020,9.33e-14,34;UBERON:0002616,2.13e-12,46;UBERON:0000955,2.49e-12,47;UBERON:0006238,2.49e-12,47;UBERON:0003528,1.28e-11,29;UBERON:0002791,1.28e-11,29;UBERON:0001893,1.28e-11,29;UBERON:0010371,2.50e-11,73;UBERON:0003080,3.19e-11,40;UBERON:0002780,5.97e-11,39;UBERON:0001890,5.97e-11,39;UBERON:0006240,5.97e-11,39;UBERON:0003056,7.55e-11,49;UBERON:0000956,4.01e-08,21;UBERON:0001869,4.01e-08,21;UBERON:0000203,4.01e-08,21;UBERON:0002619,3.41e-07,17;UBERON:0000025,3.77e-07,114;UBERON:0004111,4.43e-07,122|phase1_expression=28.6666436317581,23.0323769041978,15.9249733786338,14.8207463540347,11.520601788766,15.277013743982,22.1932008565749,14.8491821957813,7.74337971834167,11.4691617897777,22.6007718057667,15.3960266860999,10.2720437958723,10.9275503023747,12.3250611871795,14.1732687172878,16.0899231969474,14.9844528545163,13.7114433605739,19.5219239827094,68.8850650223665,16.3830069481461,25.5975793356157,29.918583062367,27.9879322901947,35.0281498110162,31.0148637234534,30.5969150413962,33.6341452437782,31.5037662199913,41.2418749818867,15.2407361630311,20.9122027778754,15.8481681015439,17.6199488048278,19.4494535069436,18.9877501324003,53.1535171035873,60.1628215283326,37.6937095661135,58.8231488031014,67.6215030108861,54.3771595394892,48.847965374524,51.2967271970744,39.0954582104382,53.2026114156667,51.0178865930245,52.2853114908043,47.6353252731994,42.6958585957356,34.5006154475932,12.9192606664457,9.42970784614748,8.06625117941913,28.2985379639542,20.057340795713,30.4246534443691,44.1049884673923,43.3772603003067,43.1005354384202,56.9258813876142,37.3503814366679,54.4439328955246,36.5880554149781,50.4440881611731,38.0492140358374,45.721978333265,30.4847460186924,33.7514845829227,35.1242685456808,48.8463183330504,44.8363138131775,40.4219637409348,44.5681440234799,34.0110951045708,29.731287869835,32.3048965355525,34.4078634493985,41.5441806350111,54.5266355870362,41.152156273984,53.3239528092638,54.0252105630413,38.3523601919793,31.2306300602088,35.7352918805748,35.975093044283,18.7800959466296,22.0668955511814,16.5222758559956,38.7190744641624,31.9586526842643,29.6836755400799,24.6915038630114,20.1612099193801,31.0382168491172,46.3570477412317,52.7365589343824,53.000936176551,24.7884418806958,20.5322363862909,20.3844191765317,7.11066703153331,31.8241830286485,32.1767029153375,31.8480400359313,23.5218792221264,10.3575153458869,19.1490359393624,26.7167403219849,23.1393763517227,27.673859670727,30.4459733916298,24.3408623770909,22.3686532566822,17.30364774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| ||
|EntrezGene=56612 | |||
|HGNC= | |||
|MCL_coexpression_id=0 | |||
|UniProt=E9PVG3 | |||
|association_with_transcript=0bp_to_ENSMUST00000062492_5end | |||
|description=CAGE_peak_1_at_Pfdn5_5end | |||
|id=chr15:102156563..102156583,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.49e-15!50;CL:0000221!2.06e-13!44;CL:0000133!2.06e-13!44;CL:0002319!2.15e-13!43;CL:0000393!1.39e-11!39;CL:0000211!1.39e-11!39;CL:0000117!5.00e-11!23;CL:0000337!5.00e-11!23;CL:0002321!9.83e-11!70;CL:0000220!9.83e-11!70;CL:0000540!5.45e-10!33;CL:0000047!5.45e-10!33;CL:0000031!5.45e-10!33;CL:0000404!5.45e-10!33;CL:0002371!1.24e-08!118;CL:0000144!1.05e-07!121;CL:0000012!1.05e-07!121;CL:0000723!1.18e-07!91;CL:0000048!1.18e-07!91;CL:0000548!1.62e-07!115;CL:0000004!1.62e-07!115;CL:0000255!1.62e-07!115 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,2.06e-13,44;CL:0000133,2.06e-13,44;CL:0002319,2.15e-13,43;CL:0000393,1.39e-11,39;CL:0000211,1.39e-11,39;CL:0000117,5.00e-11,23;CL:0000337,5.00e-11,23;CL:0002321,9.83e-11,70;CL:0000540,5.45e-10,33;CL:0000047,5.45e-10,33;CL:0000031,5.45e-10,33;CL:0000404,5.45e-10,33;CL:0000723,1.18e-07,91;CL:0000048,1.18e-07,91 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.24e-19!73;UBERON:0005743!5.24e-19!73;UBERON:0000073!1.69e-18!75;UBERON:0001016!1.69e-18!75;UBERON:0002346!6.01e-15!71;UBERON:0003075!6.01e-15!71;UBERON:0007284!6.01e-15!71;UBERON:0001049!8.15e-15!52;UBERON:0005068!8.15e-15!52;UBERON:0006241!8.15e-15!52;UBERON:0007135!8.15e-15!52;UBERON:0004121!1.35e-14!102;UBERON:0000924!1.35e-14!102;UBERON:0006601!1.35e-14!102;UBERON:0002020!9.33e-14!34;UBERON:0002616!2.63e-13!49;UBERON:0000955!3.08e-13!50;UBERON:0006238!3.08e-13!50;UBERON:0000033!8.51e-13!63;UBERON:0002791!1.28e-11!29;UBERON:0003528!1.28e-11!29;UBERON:0001893!1.28e-11!29;UBERON:0003080!3.19e-11!40;UBERON:0002780!5.97e-11!39;UBERON:0001890!5.97e-11!39;UBERON:0006240!5.97e-11!39;UBERON:0003056!7.55e-11!49;UBERON:0000956!4.01e-08!21;UBERON:0001869!4.01e-08!21;UBERON:0000203!4.01e-08!21;UBERON:0002619!3.41e-07!17;UBERON:0000025!3.77e-07!114;UBERON:0004111!4.43e-07!122 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.24e-19,73;UBERON:0001016,1.69e-18,75;UBERON:0010314,5.44e-17,92;UBERON:0000073,1.77e-15,54;UBERON:0001049,8.15e-15,52;UBERON:0005068,8.15e-15,52;UBERON:0006241,8.15e-15,52;UBERON:0007135,8.15e-15,52;UBERON:0002346,8.99e-15,64;UBERON:0003075,8.99e-15,64;UBERON:0007284,8.99e-15,64;UBERON:0004121,4.03e-14,95;UBERON:0000924,4.03e-14,95;UBERON:0006601,4.03e-14,95;UBERON:0002020,9.33e-14,34;UBERON:0002616,2.13e-12,46;UBERON:0000955,2.49e-12,47;UBERON:0006238,2.49e-12,47;UBERON:0003528,1.28e-11,29;UBERON:0002791,1.28e-11,29;UBERON:0001893,1.28e-11,29;UBERON:0010371,2.50e-11,73;UBERON:0003080,3.19e-11,40;UBERON:0002780,5.97e-11,39;UBERON:0001890,5.97e-11,39;UBERON:0006240,5.97e-11,39;UBERON:0003056,7.55e-11,49;UBERON:0000956,4.01e-08,21;UBERON:0001869,4.01e-08,21;UBERON:0000203,4.01e-08,21;UBERON:0002619,3.41e-07,17;UBERON:0000025,3.77e-07,114;UBERON:0004111,4.43e-07,122 | |||
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| |||
|short_description=p1@Pfdn5 | |||
}} |
Revision as of 10:04, 13 September 2013
Short description: | p1@Pfdn5 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Pfdn5_5end |
Coexpression cluster: | MCL_coexpression_mm9:0 |
Association with transcript: | 0bp_to_ENSMUST00000062492_5end |
EntrezGene: | Pfdn5 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 2.06e-13 | 44 |
neurectodermal cell | 2.06e-13 | 44 |
neural cell | 2.15e-13 | 43 |
electrically responsive cell | 1.39e-11 | 39 |
electrically active cell | 1.39e-11 | 39 |
CNS neuron (sensu Vertebrata) | 5.00e-11 | 23 |
neuroblast (sensu Vertebrata) | 5.00e-11 | 23 |
embryonic cell | 9.83e-11 | 70 |
neuron | 5.45e-10 | 33 |
neuronal stem cell | 5.45e-10 | 33 |
neuroblast | 5.45e-10 | 33 |
electrically signaling cell | 5.45e-10 | 33 |
somatic stem cell | 1.18e-07 | 91 |
multi fate stem cell | 1.18e-07 | 91 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 5.24e-19 | 73 |
nervous system | 1.69e-18 | 75 |
structure with developmental contribution from neural crest | 5.44e-17 | 92 |
regional part of nervous system | 1.77e-15 | 54 |
neural tube | 8.15e-15 | 52 |
neural rod | 8.15e-15 | 52 |
future spinal cord | 8.15e-15 | 52 |
neural keel | 8.15e-15 | 52 |
neurectoderm | 8.99e-15 | 64 |
neural plate | 8.99e-15 | 64 |
presumptive neural plate | 8.99e-15 | 64 |
ectoderm-derived structure | 4.03e-14 | 95 |
ectoderm | 4.03e-14 | 95 |
presumptive ectoderm | 4.03e-14 | 95 |
gray matter | 9.33e-14 | 34 |
regional part of brain | 2.13e-12 | 46 |
brain | 2.49e-12 | 47 |
future brain | 2.49e-12 | 47 |
brain grey matter | 1.28e-11 | 29 |
regional part of telencephalon | 1.28e-11 | 29 |
telencephalon | 1.28e-11 | 29 |
ecto-epithelium | 2.50e-11 | 73 |
anterior neural tube | 3.19e-11 | 40 |
regional part of forebrain | 5.97e-11 | 39 |
forebrain | 5.97e-11 | 39 |
future forebrain | 5.97e-11 | 39 |
pre-chordal neural plate | 7.55e-11 | 49 |
cerebral cortex | 4.01e-08 | 21 |
cerebral hemisphere | 4.01e-08 | 21 |
pallium | 4.01e-08 | 21 |
regional part of cerebral cortex | 3.41e-07 | 17 |
tube | 3.77e-07 | 114 |
anatomical conduit | 4.43e-07 | 122 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.