FFCP PHASE1:Hg19::chr4:161747540..161747551,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C2745|description=CAGE_peak_at_chr4:161747540..161747551,-|id=chr4:161747540..161747551,-|ontology_enrichment_celltype=CL:1000415!1.54e-07!2|ontology_enrichment_celltype_v019=CL:0000322;1.01e-09;3!CL:0002178;1.19e-09;3|ontology_enrichment_celltype_v019_2=CL:0000322,1.01e-09,3;CL:0002178,1.19e-09,3|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:3493!1.67e-26!2;DOID:3111!5.85e-14!1;DOID:3603!5.85e-14!1;DOID:162!1.21e-08!235;DOID:305!1.34e-08!106;DOID:14566!2.00e-08!239;DOID:299!2.57e-08!25;DOID:1240!7.85e-08!39;DOID:3910!9.25e-08!2|ontology_enrichment_disease_v019=DOID:3493;1.46e-50;2!DOID:3111;9.79e-26;1!DOID:3603;9.79e-26;1!DOID:3910;6.43e-14;2!DOID:299;1.24e-09;25!DOID:3119;4.42e-08;14|ontology_enrichment_disease_v019_2=DOID:3493,1.46e-50,2;DOID:3111,7.62e-26,1;DOID:3603,7.62e-26,1;DOID:3910,6.43e-14,2;DOID:305,1.71e-11,106;DOID:299,1.20e-09,25;DOID:0050687,1.66e-08,143;DOID:3119,4.34e-08,14|ontology_enrichment_uberon=UBERON:0004903!9.25e-08!2;UBERON:0002173!9.25e-08!2;UBERON:0002186!9.25e-08!2|ontology_enrichment_uberon_v019=UBERON:0004903;6.43e-14;2!UBERON:0002173;6.43e-14;2!UBERON:0002186;6.43e-14;2!UBERON:0004821;1.01e-09;3!UBERON:0007499;1.01e-09;3!UBERON:0003215;1.01e-09;3!UBERON:0010368;1.01e-09;3!UBERON:0009911;1.01e-09;3!UBERON:0002299;1.01e-09;3!UBERON:0006524;1.01e-09;3!UBERON:0008874;1.01e-09;3!UBERON:0002169;1.01e-09;3!UBERON:0004894;1.01e-09;3!UBERON:0009856;1.31e-07;4|ontology_enrichment_uberon_v019_2=UBERON:0004903,6.43e-14,2;UBERON:0002173,6.43e-14,2;UBERON:0002186,6.43e-14,2;UBERON:0004821,1.01e-09,3;UBERON:0003215,1.01e-09,3;UBERON:0010368,1.01e-09,3;UBERON:0009911,1.01e-09,3;UBERON:0002299,1.01e-09,3;UBERON:0006524,1.01e-09,3;UBERON:0008874,1.01e-09,3;UBERON:0002169,1.01e-09,3;UBERON:0004894,1.01e-09,3|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0,0.333698283423817,0,0.556812347790485,0,0.270455678475983,0,0,0,0,0,1.11443384277478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.91589236141789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.801588202515337,0,0,0,0,0,2.16082196982225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26787274015176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31020638566432,0,0,5.20196238160788,6.21781417409574,0,0,0,0,0,0,0,0,0,0,0,0,2.35158648180761,0,0,0,0,0,0,0,0,0,0,1.05868461514708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr4:161747540..161747551,-}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C2745 | |||
|description=CAGE_peak_at_chr4:161747540..161747551,- | |||
|id=chr4:161747540..161747551,- | |||
|ontology_enrichment_celltype=CL:1000415!1.54e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0000322;1.01e-09;3!CL:0002178;1.19e-09;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000322,1.01e-09,3;CL:0002178,1.19e-09,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3493!1.67e-26!2;DOID:3111!5.85e-14!1;DOID:3603!5.85e-14!1;DOID:162!1.21e-08!235;DOID:305!1.34e-08!106;DOID:14566!2.00e-08!239;DOID:299!2.57e-08!25;DOID:1240!7.85e-08!39;DOID:3910!9.25e-08!2 | |||
|ontology_enrichment_disease_v019=DOID:3493;1.46e-50;2!DOID:3111;9.79e-26;1!DOID:3603;9.79e-26;1!DOID:3910;6.43e-14;2!DOID:299;1.24e-09;25!DOID:3119;4.42e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,1.46e-50,2;DOID:3111,7.62e-26,1;DOID:3603,7.62e-26,1;DOID:3910,6.43e-14,2;DOID:305,1.71e-11,106;DOID:299,1.20e-09,25;DOID:0050687,1.66e-08,143;DOID:3119,4.34e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0004903!9.25e-08!2;UBERON:0002173!9.25e-08!2;UBERON:0002186!9.25e-08!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0004903;6.43e-14;2!UBERON:0002173;6.43e-14;2!UBERON:0002186;6.43e-14;2!UBERON:0004821;1.01e-09;3!UBERON:0007499;1.01e-09;3!UBERON:0003215;1.01e-09;3!UBERON:0010368;1.01e-09;3!UBERON:0009911;1.01e-09;3!UBERON:0002299;1.01e-09;3!UBERON:0006524;1.01e-09;3!UBERON:0008874;1.01e-09;3!UBERON:0002169;1.01e-09;3!UBERON:0004894;1.01e-09;3!UBERON:0009856;1.31e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,6.43e-14,2;UBERON:0002173,6.43e-14,2;UBERON:0002186,6.43e-14,2;UBERON:0004821,1.01e-09,3;UBERON:0003215,1.01e-09,3;UBERON:0010368,1.01e-09,3;UBERON:0009911,1.01e-09,3;UBERON:0002299,1.01e-09,3;UBERON:0006524,1.01e-09,3;UBERON:0008874,1.01e-09,3;UBERON:0002169,1.01e-09,3;UBERON:0004894,1.01e-09,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0,0.333698283423817,0,0.556812347790485,0,0.270455678475983,0,0,0,0,0,1.11443384277478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.91589236141789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.801588202515337,0,0,0,0,0,2.16082196982225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26787274015176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31020638566432,0,0,5.20196238160788,6.21781417409574,0,0,0,0,0,0,0,0,0,0,0,0,2.35158648180761,0,0,0,0,0,0,0,0,0,0,1.05868461514708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr4:161747540..161747551,- | |||
}} |
Revision as of 03:08, 13 September 2013
Short description: | p@chr4:161747540..161747551, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr4:161747540..161747551, - |
Coexpression cluster: | C2745_bronchioalveolar_signet_mucinous_adenocarcinoma_giant_gall_smallcell |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pneumocyte | 1.01e-09 | 3 |
epithelial cell of stomach | 1.19e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 6.43e-14 | 2 |
alveolar duct | 6.43e-14 | 2 |
bronchiole | 6.43e-14 | 2 |
pulmonary alveolus epithelium | 1.01e-09 | 3 |
alveolus | 1.01e-09 | 3 |
pulmonary lobule | 1.01e-09 | 3 |
lobule | 1.01e-09 | 3 |
alveolus of lung | 1.01e-09 | 3 |
alveolar system | 1.01e-09 | 3 |
pulmonary acinus | 1.01e-09 | 3 |
alveolar sac | 1.01e-09 | 3 |
alveolar wall | 1.01e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 1.46e-50 | 2 |
cystadenocarcinoma | 7.62e-26 | 1 |
mucinous cystadenocarcinoma | 7.62e-26 | 1 |
lung adenocarcinoma | 6.43e-14 | 2 |
carcinoma | 1.71e-11 | 106 |
adenocarcinoma | 1.20e-09 | 25 |
cell type cancer | 1.66e-08 | 143 |
gastrointestinal system cancer | 4.34e-08 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.