FFCP PHASE1:Hg19::chr4:149677484..149677487,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C186|description=CAGE_peak_at_chr4:149677484..149677487,-|id=chr4:149677484..149677487,-|ontology_enrichment_celltype=CL:1000507!5.65e-45!12;CL:1000494!5.65e-45!12;CL:1000449!1.28e-33!16;CL:1000497!7.90e-30!18;CL:0002518!7.90e-30!18;CL:0000239!4.30e-16!3;CL:1000615!4.30e-16!3;CL:0002306!4.30e-16!3;CL:0002681!3.80e-14!13;CL:0002584!3.80e-14!13;CL:0000319!2.46e-12!1;CL:0000066!9.86e-08!254;CL:1000415!5.41e-07!2;CL:0000159!8.52e-07!2|ontology_enrichment_celltype_v019=CL:1000415;8.10e-26;2!CL:1000507;8.98e-21;10!CL:1000494;8.98e-21;10!CL:0000239;1.03e-17;3!CL:1000615;1.03e-17;3!CL:0002306;1.03e-17;3!CL:1000449;3.04e-14;15!CL:1000497;1.06e-12;17!CL:0002518;1.06e-12;17|ontology_enrichment_celltype_v019_2=CL:1000415,9.18e-26,2;CL:1000507,8.54e-21,10;CL:1000494,8.54e-21,10;CL:0000239,9.46e-18,3;CL:1000615,9.46e-18,3;CL:0002306,9.46e-18,3;CL:1000449,2.94e-14,15;CL:1000497,1.03e-12,17;CL:0002518,1.03e-12,17|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:3030!2.46e-12!1;DOID:1749!1.25e-07!14;DOID:4231!9.02e-07!2;DOID:1907!9.02e-07!2;DOID:4468!9.54e-07!2|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0009773!5.65e-45!12;UBERON:0001231!5.65e-45!12;UBERON:0004810!5.65e-45!12;UBERON:0004211!1.28e-33!16;UBERON:0001285!1.28e-33!16;UBERON:0007684!1.28e-33!16;UBERON:0003220!1.28e-33!16;UBERON:0004208!1.28e-33!16;UBERON:0006555!1.30e-31!17;UBERON:0005103!1.30e-31!17;UBERON:0000083!1.30e-31!17;UBERON:0009201!1.30e-31!17;UBERON:0004819!1.30e-31!17;UBERON:0006553!1.30e-31!17;UBERON:0003074!1.30e-31!17;UBERON:0003060!1.30e-31!17;UBERON:0000080!7.90e-30!18;UBERON:0002120!7.90e-30!18;UBERON:0004875!7.90e-30!18;UBERON:0005721!7.90e-30!18;UBERON:0005754!7.90e-30!18;UBERON:0007297!7.90e-30!18;UBERON:0004876!8.53e-27!20;UBERON:0003887!1.71e-25!21;UBERON:0000058!1.74e-20!26;UBERON:0002113!1.05e-19!27;UBERON:0003918!1.05e-19!27;UBERON:0005095!1.05e-19!27;UBERON:0007687!1.05e-19!27;UBERON:0000489!1.55e-16!32;UBERON:0006853!4.30e-16!3;UBERON:0007685!4.30e-16!3;UBERON:0004134!4.30e-16!3;UBERON:0003064!3.21e-14!37;UBERON:0001225!3.80e-14!13;UBERON:0008987!3.80e-14!13;UBERON:0003886!2.68e-13!63;UBERON:0005172!3.52e-12!55;UBERON:0005173!3.52e-12!55;UBERON:0006554!7.41e-12!44;UBERON:0002553!7.42e-12!70;UBERON:0001008!1.40e-11!45;UBERON:0001851!1.54e-11!16;UBERON:0002417!6.81e-11!61;UBERON:0000916!6.81e-11!61;UBERON:0000353!7.14e-11!17;UBERON:0000464!2.15e-09!104;UBERON:0000466!1.63e-07!126;UBERON:0005177!2.53e-07!107;UBERON:0003103!2.57e-07!69;UBERON:0009569!7.14e-07!113|ontology_enrichment_uberon_v019=UBERON:0004211;8.98e-21;10!UBERON:0009773;8.98e-21;10!UBERON:0001231;8.98e-21;10!UBERON:0004810;8.98e-21;10!UBERON:0002110;1.03e-17;3!UBERON:0006853;1.03e-17;3!UBERON:0007685;1.03e-17;3!UBERON:0004134;1.03e-17;3!UBERON:0006555;3.04e-14;15!UBERON:0004819;3.04e-14;15!UBERON:0001285;3.04e-14;15!UBERON:0007684;3.04e-14;15!UBERON:0002113;2.61e-09;24!UBERON:0011143;2.61e-09;24!UBERON:0005172;3.15e-09;52!UBERON:0005173;3.15e-09;52!UBERON:0002294;2.26e-08;7!UBERON:0001173;2.26e-08;7!UBERON:0000489;7.03e-08;29!UBERON:0006554;1.19e-07;30!UBERON:0001008;1.19e-07;30|ontology_enrichment_uberon_v019_2=UBERON:0004810,8.54e-21,10;UBERON:0006853,9.46e-18,3;UBERON:0007685,9.46e-18,3;UBERON:0004134,9.46e-18,3;UBERON:0002110,1.12e-17,3;UBERON:0006242,1.12e-17,3;UBERON:0004211,2.94e-14,15;UBERON:0009773,2.94e-14,15;UBERON:0001231,2.94e-14,15;UBERON:0001285,2.94e-14,15;UBERON:0007684,2.94e-14,15;UBERON:0004208,2.94e-14,15;UBERON:0006555,1.95e-13,16;UBERON:0004819,1.95e-13,16;UBERON:0005172,3.93e-09,54;UBERON:0005173,3.93e-09,54;UBERON:0002113,1.11e-08,26;UBERON:0003918,1.11e-08,26;UBERON:0011143,1.11e-08,26;UBERON:0005095,1.11e-08,26;UBERON:0007687,1.11e-08,26;UBERON:0002417,2.64e-08,60;UBERON:0000916,2.64e-08,60;UBERON:0000489,1.92e-07,31;UBERON:0002294,8.85e-07,9;UBERON:0001173,8.85e-07,9;UBERON:0004912,8.85e-07,9|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.902399225814824,0.616122696835318,0.784349769176855,2.92278449306521,0.105551628892876,0,0,0,0,0,0,1.529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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C186 | |||
|description=CAGE_peak_at_chr4:149677484..149677487,- | |||
|id=chr4:149677484..149677487,- | |||
|ontology_enrichment_celltype=CL:1000507!5.65e-45!12;CL:1000494!5.65e-45!12;CL:1000449!1.28e-33!16;CL:1000497!7.90e-30!18;CL:0002518!7.90e-30!18;CL:0000239!4.30e-16!3;CL:1000615!4.30e-16!3;CL:0002306!4.30e-16!3;CL:0002681!3.80e-14!13;CL:0002584!3.80e-14!13;CL:0000319!2.46e-12!1;CL:0000066!9.86e-08!254;CL:1000415!5.41e-07!2;CL:0000159!8.52e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:1000415;8.10e-26;2!CL:1000507;8.98e-21;10!CL:1000494;8.98e-21;10!CL:0000239;1.03e-17;3!CL:1000615;1.03e-17;3!CL:0002306;1.03e-17;3!CL:1000449;3.04e-14;15!CL:1000497;1.06e-12;17!CL:0002518;1.06e-12;17 | |||
|ontology_enrichment_celltype_v019_2=CL:1000415,9.18e-26,2;CL:1000507,8.54e-21,10;CL:1000494,8.54e-21,10;CL:0000239,9.46e-18,3;CL:1000615,9.46e-18,3;CL:0002306,9.46e-18,3;CL:1000449,2.94e-14,15;CL:1000497,1.03e-12,17;CL:0002518,1.03e-12,17 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3030!2.46e-12!1;DOID:1749!1.25e-07!14;DOID:4231!9.02e-07!2;DOID:1907!9.02e-07!2;DOID:4468!9.54e-07!2 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0009773!5.65e-45!12;UBERON:0001231!5.65e-45!12;UBERON:0004810!5.65e-45!12;UBERON:0004211!1.28e-33!16;UBERON:0001285!1.28e-33!16;UBERON:0007684!1.28e-33!16;UBERON:0003220!1.28e-33!16;UBERON:0004208!1.28e-33!16;UBERON:0006555!1.30e-31!17;UBERON:0005103!1.30e-31!17;UBERON:0000083!1.30e-31!17;UBERON:0009201!1.30e-31!17;UBERON:0004819!1.30e-31!17;UBERON:0006553!1.30e-31!17;UBERON:0003074!1.30e-31!17;UBERON:0003060!1.30e-31!17;UBERON:0000080!7.90e-30!18;UBERON:0002120!7.90e-30!18;UBERON:0004875!7.90e-30!18;UBERON:0005721!7.90e-30!18;UBERON:0005754!7.90e-30!18;UBERON:0007297!7.90e-30!18;UBERON:0004876!8.53e-27!20;UBERON:0003887!1.71e-25!21;UBERON:0000058!1.74e-20!26;UBERON:0002113!1.05e-19!27;UBERON:0003918!1.05e-19!27;UBERON:0005095!1.05e-19!27;UBERON:0007687!1.05e-19!27;UBERON:0000489!1.55e-16!32;UBERON:0006853!4.30e-16!3;UBERON:0007685!4.30e-16!3;UBERON:0004134!4.30e-16!3;UBERON:0003064!3.21e-14!37;UBERON:0001225!3.80e-14!13;UBERON:0008987!3.80e-14!13;UBERON:0003886!2.68e-13!63;UBERON:0005172!3.52e-12!55;UBERON:0005173!3.52e-12!55;UBERON:0006554!7.41e-12!44;UBERON:0002553!7.42e-12!70;UBERON:0001008!1.40e-11!45;UBERON:0001851!1.54e-11!16;UBERON:0002417!6.81e-11!61;UBERON:0000916!6.81e-11!61;UBERON:0000353!7.14e-11!17;UBERON:0000464!2.15e-09!104;UBERON:0000466!1.63e-07!126;UBERON:0005177!2.53e-07!107;UBERON:0003103!2.57e-07!69;UBERON:0009569!7.14e-07!113 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;8.98e-21;10!UBERON:0009773;8.98e-21;10!UBERON:0001231;8.98e-21;10!UBERON:0004810;8.98e-21;10!UBERON:0002110;1.03e-17;3!UBERON:0006853;1.03e-17;3!UBERON:0007685;1.03e-17;3!UBERON:0004134;1.03e-17;3!UBERON:0006555;3.04e-14;15!UBERON:0004819;3.04e-14;15!UBERON:0001285;3.04e-14;15!UBERON:0007684;3.04e-14;15!UBERON:0002113;2.61e-09;24!UBERON:0011143;2.61e-09;24!UBERON:0005172;3.15e-09;52!UBERON:0005173;3.15e-09;52!UBERON:0002294;2.26e-08;7!UBERON:0001173;2.26e-08;7!UBERON:0000489;7.03e-08;29!UBERON:0006554;1.19e-07;30!UBERON:0001008;1.19e-07;30 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,8.54e-21,10;UBERON:0006853,9.46e-18,3;UBERON:0007685,9.46e-18,3;UBERON:0004134,9.46e-18,3;UBERON:0002110,1.12e-17,3;UBERON:0006242,1.12e-17,3;UBERON:0004211,2.94e-14,15;UBERON:0009773,2.94e-14,15;UBERON:0001231,2.94e-14,15;UBERON:0001285,2.94e-14,15;UBERON:0007684,2.94e-14,15;UBERON:0004208,2.94e-14,15;UBERON:0006555,1.95e-13,16;UBERON:0004819,1.95e-13,16;UBERON:0005172,3.93e-09,54;UBERON:0005173,3.93e-09,54;UBERON:0002113,1.11e-08,26;UBERON:0003918,1.11e-08,26;UBERON:0011143,1.11e-08,26;UBERON:0005095,1.11e-08,26;UBERON:0007687,1.11e-08,26;UBERON:0002417,2.64e-08,60;UBERON:0000916,2.64e-08,60;UBERON:0000489,1.92e-07,31;UBERON:0002294,8.85e-07,9;UBERON:0001173,8.85e-07,9;UBERON:0004912,8.85e-07,9 | |||
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|short_description=p@chr4:149677484..149677487,- | |||
}} |
Revision as of 02:42, 13 September 2013
Short description: | p@chr4:149677484..149677487, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr4:149677484..149677487, - |
Coexpression cluster: | C186_squamous_papillotubular_large_Tracheal_oral_Small_epidermoid |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of gall bladder | 9.18e-26 | 2 |
kidney tubule cell | 8.54e-21 | 10 |
nephron tubule epithelial cell | 8.54e-21 | 10 |
brush border epithelial cell | 9.46e-18 | 3 |
kidney cortex tubule cell | 9.46e-18 | 3 |
epithelial cell of proximal tubule | 9.46e-18 | 3 |
epithelial cell of nephron | 2.94e-14 | 15 |
kidney cell | 1.03e-12 | 17 |
kidney epithelial cell | 1.03e-12 | 17 |
Ontology term | p-value | n |
---|---|---|
nephron tubule epithelium | 8.54e-21 | 10 |
renal cortex tubule | 9.46e-18 | 3 |
region of nephron tubule | 9.46e-18 | 3 |
proximal tubule | 9.46e-18 | 3 |
gallbladder | 1.12e-17 | 3 |
gall bladder primordium | 1.12e-17 | 3 |
nephron epithelium | 2.94e-14 | 15 |
renal tubule | 2.94e-14 | 15 |
nephron tubule | 2.94e-14 | 15 |
nephron | 2.94e-14 | 15 |
uriniferous tubule | 2.94e-14 | 15 |
nephrogenic mesenchyme | 2.94e-14 | 15 |
excretory tube | 1.95e-13 | 16 |
kidney epithelium | 1.95e-13 | 16 |
abdomen element | 3.93e-09 | 54 |
abdominal segment element | 3.93e-09 | 54 |
kidney | 1.11e-08 | 26 |
kidney mesenchyme | 1.11e-08 | 26 |
upper urinary tract | 1.11e-08 | 26 |
kidney rudiment | 1.11e-08 | 26 |
kidney field | 1.11e-08 | 26 |
abdominal segment of trunk | 2.64e-08 | 60 |
abdomen | 2.64e-08 | 60 |
cavitated compound organ | 1.92e-07 | 31 |
biliary system | 8.85e-07 | 9 |
biliary tree | 8.85e-07 | 9 |
biliary bud | 8.85e-07 | 9 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.