FFCP PHASE1:Hg19::chr4:141264761..141264778,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=60592|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=20335|TSSclassifier=S|UniProt=|association_with_transcript=6bp_to_ENST00000506322_5end|description=CAGE_peak_3_at_SCOC_5end|id=chr4:141264761..141264778,+|ontology_enrichment_celltype=CL:1000507!1.50e-08!12;CL:1000494!1.50e-08!12;CL:0000239!1.77e-07!3;CL:1000615!1.77e-07!3;CL:0002306!1.77e-07!3|ontology_enrichment_celltype_v019=CL:1000507;1.49e-13;10!CL:1000494;1.49e-13;10!CL:0000239;5.49e-12;3!CL:1000615;5.49e-12;3!CL:0002306;5.49e-12;3!CL:0000123;2.92e-09;2!CL:0000242;2.92e-09;2!CL:1000449;7.88e-09;15!CL:0002681;6.60e-08;12!CL:0002584;6.60e-08;12!CL:1000497;1.02e-07;17!CL:0002518;1.02e-07;17|ontology_enrichment_celltype_v019_2=CL:1000507,1.65e-13,10;CL:1000494,1.65e-13,10;CL:0000239,6.17e-12,3;CL:1000615,6.17e-12,3;CL:0002306,6.17e-12,3;CL:0000242,3.10e-09,2;CL:1000449,8.42e-09,15;CL:0002681,6.97e-08,12;CL:0002584,6.97e-08,12;CL:1000497,1.08e-07,17;CL:0002518,1.08e-07,17|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:299!4.04e-15!25;DOID:305!7.77e-10!106|ontology_enrichment_disease_v019=DOID:299;1.41e-14;25!DOID:4468;1.30e-09;2!DOID:3493;2.33e-09;2!DOID:3119;6.38e-07;14|ontology_enrichment_disease_v019_2=DOID:299,1.35e-14,25;DOID:4468,1.30e-09,2;DOID:3493,2.23e-09,2;DOID:3119,7.04e-07,14|ontology_enrichment_uberon=UBERON:0004921!3.00e-13!129;UBERON:0004185!3.00e-13!129;UBERON:0000058!3.42e-12!26;UBERON:0005409!2.04e-11!35;UBERON:0001007!4.44e-11!155;UBERON:0001555!4.44e-11!155;UBERON:0007026!4.44e-11!155;UBERON:0000466!1.00e-10!126;UBERON:0007023!3.11e-10!115;UBERON:0004119!4.97e-10!169;UBERON:0000925!4.97e-10!169;UBERON:0006595!4.97e-10!169;UBERON:0000160!1.00e-09!27;UBERON:0005177!1.84e-09!107;UBERON:0000077!2.80e-09!130;UBERON:0009773!1.50e-08!12;UBERON:0001231!1.50e-08!12;UBERON:0004810!1.50e-08!12;UBERON:0002294!2.09e-08!7;UBERON:0001173!2.09e-08!7;UBERON:0004912!2.09e-08!7;UBERON:0000464!4.42e-08!104;UBERON:0000481!1.41e-07!347;UBERON:0006853!1.77e-07!3;UBERON:0007685!1.77e-07!3;UBERON:0004134!1.77e-07!3;UBERON:0006555!1.98e-07!17;UBERON:0005103!1.98e-07!17;UBERON:0000083!1.98e-07!17;UBERON:0009201!1.98e-07!17;UBERON:0004819!1.98e-07!17;UBERON:0006553!1.98e-07!17;UBERON:0003074!1.98e-07!17;UBERON:0003060!1.98e-07!17;UBERON:0005911!4.15e-07!82;UBERON:0000059!4.68e-07!11;UBERON:0009569!4.98e-07!113;UBERON:0000080!6.22e-07!18;UBERON:0002120!6.22e-07!18;UBERON:0004875!6.22e-07!18;UBERON:0005721!6.22e-07!18;UBERON:0005754!6.22e-07!18;UBERON:0007297!6.22e-07!18;UBERON:0006554!9.74e-07!44|ontology_enrichment_uberon_v019=UBERON:0005409;3.20e-31;22!UBERON:0000160;9.05e-25;17!UBERON:0004921;1.12e-18;33!UBERON:0002108;7.51e-14;4!UBERON:0004211;1.49e-13;10!UBERON:0009773;1.49e-13;10!UBERON:0001231;1.49e-13;10!UBERON:0004810;1.49e-13;10!UBERON:0000059;4.00e-12;11!UBERON:0006853;5.49e-12;3!UBERON:0007685;5.49e-12;3!UBERON:0004134;5.49e-12;3!UBERON:0001155;1.38e-10;9!UBERON:0000058;5.19e-10;10!UBERON:0002294;1.27e-09;7!UBERON:0001173;1.27e-09;7!UBERON:0000007;1.57e-09;2!UBERON:0002113;2.20e-09;24!UBERON:0011143;2.20e-09;24!UBERON:0006555;7.88e-09;15!UBERON:0004819;7.88e-09;15!UBERON:0001285;7.88e-09;15!UBERON:0007684;7.88e-09;15!UBERON:0000945;5.32e-08;5!UBERON:0010039;5.32e-08;5!UBERON:0001225;6.60e-08;12!UBERON:0008987;6.60e-08;12!UBERON:0000489;1.52e-07;29!UBERON:0004907;2.66e-07;5!UBERON:0006554;2.98e-07;30!UBERON:0001008;2.98e-07;30|ontology_enrichment_uberon_v019_2=UBERON:0005409,2.75e-27,25;UBERON:0000160,8.14e-25,17;UBERON:0002108,7.39e-14,4;UBERON:0004810,1.65e-13,10;UBERON:0000059,3.73e-12,11;UBERON:0006853,6.17e-12,3;UBERON:0007685,6.17e-12,3;UBERON:0004134,6.17e-12,3;UBERON:0006555,4.59e-11,16;UBERON:0004819,4.59e-11,16;UBERON:0004921,7.25e-11,118;UBERON:0002113,8.52e-11,26;UBERON:0003918,8.52e-11,26;UBERON:0011143,8.52e-11,26;UBERON:0005095,8.52e-11,26;UBERON:0007687,8.52e-11,26;UBERON:0001155,1.30e-10,9;UBERON:0001007,7.10e-10,145;UBERON:0001555,7.10e-10,145;UBERON:0007026,7.10e-10,145;UBERON:0000007,1.60e-09,2;UBERON:0004211,8.42e-09,15;UBERON:0009773,8.42e-09,15;UBERON:0001231,8.42e-09,15;UBERON:0001285,8.42e-09,15;UBERON:0007684,8.42e-09,15;UBERON:0004208,8.42e-09,15;UBERON:0000489,8.50e-09,31;UBERON:0004119,1.88e-08,160;UBERON:0000925,1.88e-08,160;UBERON:0006595,1.88e-08,160;UBERON:0005177,2.29e-08,101;UBERON:0005172,5.52e-08,54;UBERON:0005173,5.52e-08,54;UBERON:0001225,6.97e-08,12;UBERON:0008987,6.97e-08,12;UBERON:0002294,1.86e-07,9;UBERON:0001173,1.86e-07,9;UBERON:0004912,1.86e-07,9;UBERON:0004907,2.57e-07,5;UBERON:0002417,5.96e-07,60;UBERON:0000916,5.96e-07,60|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382067028739756,0,0.236132343941038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.99486180268024,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=60592 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20335 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=6bp_to_ENST00000506322_5end | |||
|description=CAGE_peak_3_at_SCOC_5end | |||
|id=chr4:141264761..141264778,+ | |||
|ontology_enrichment_celltype=CL:1000507!1.50e-08!12;CL:1000494!1.50e-08!12;CL:0000239!1.77e-07!3;CL:1000615!1.77e-07!3;CL:0002306!1.77e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:1000507;1.49e-13;10!CL:1000494;1.49e-13;10!CL:0000239;5.49e-12;3!CL:1000615;5.49e-12;3!CL:0002306;5.49e-12;3!CL:0000123;2.92e-09;2!CL:0000242;2.92e-09;2!CL:1000449;7.88e-09;15!CL:0002681;6.60e-08;12!CL:0002584;6.60e-08;12!CL:1000497;1.02e-07;17!CL:0002518;1.02e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,1.65e-13,10;CL:1000494,1.65e-13,10;CL:0000239,6.17e-12,3;CL:1000615,6.17e-12,3;CL:0002306,6.17e-12,3;CL:0000242,3.10e-09,2;CL:1000449,8.42e-09,15;CL:0002681,6.97e-08,12;CL:0002584,6.97e-08,12;CL:1000497,1.08e-07,17;CL:0002518,1.08e-07,17 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:299!4.04e-15!25;DOID:305!7.77e-10!106 | |||
|ontology_enrichment_disease_v019=DOID:299;1.41e-14;25!DOID:4468;1.30e-09;2!DOID:3493;2.33e-09;2!DOID:3119;6.38e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:299,1.35e-14,25;DOID:4468,1.30e-09,2;DOID:3493,2.23e-09,2;DOID:3119,7.04e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0004921!3.00e-13!129;UBERON:0004185!3.00e-13!129;UBERON:0000058!3.42e-12!26;UBERON:0005409!2.04e-11!35;UBERON:0001007!4.44e-11!155;UBERON:0001555!4.44e-11!155;UBERON:0007026!4.44e-11!155;UBERON:0000466!1.00e-10!126;UBERON:0007023!3.11e-10!115;UBERON:0004119!4.97e-10!169;UBERON:0000925!4.97e-10!169;UBERON:0006595!4.97e-10!169;UBERON:0000160!1.00e-09!27;UBERON:0005177!1.84e-09!107;UBERON:0000077!2.80e-09!130;UBERON:0009773!1.50e-08!12;UBERON:0001231!1.50e-08!12;UBERON:0004810!1.50e-08!12;UBERON:0002294!2.09e-08!7;UBERON:0001173!2.09e-08!7;UBERON:0004912!2.09e-08!7;UBERON:0000464!4.42e-08!104;UBERON:0000481!1.41e-07!347;UBERON:0006853!1.77e-07!3;UBERON:0007685!1.77e-07!3;UBERON:0004134!1.77e-07!3;UBERON:0006555!1.98e-07!17;UBERON:0005103!1.98e-07!17;UBERON:0000083!1.98e-07!17;UBERON:0009201!1.98e-07!17;UBERON:0004819!1.98e-07!17;UBERON:0006553!1.98e-07!17;UBERON:0003074!1.98e-07!17;UBERON:0003060!1.98e-07!17;UBERON:0005911!4.15e-07!82;UBERON:0000059!4.68e-07!11;UBERON:0009569!4.98e-07!113;UBERON:0000080!6.22e-07!18;UBERON:0002120!6.22e-07!18;UBERON:0004875!6.22e-07!18;UBERON:0005721!6.22e-07!18;UBERON:0005754!6.22e-07!18;UBERON:0007297!6.22e-07!18;UBERON:0006554!9.74e-07!44 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;3.20e-31;22!UBERON:0000160;9.05e-25;17!UBERON:0004921;1.12e-18;33!UBERON:0002108;7.51e-14;4!UBERON:0004211;1.49e-13;10!UBERON:0009773;1.49e-13;10!UBERON:0001231;1.49e-13;10!UBERON:0004810;1.49e-13;10!UBERON:0000059;4.00e-12;11!UBERON:0006853;5.49e-12;3!UBERON:0007685;5.49e-12;3!UBERON:0004134;5.49e-12;3!UBERON:0001155;1.38e-10;9!UBERON:0000058;5.19e-10;10!UBERON:0002294;1.27e-09;7!UBERON:0001173;1.27e-09;7!UBERON:0000007;1.57e-09;2!UBERON:0002113;2.20e-09;24!UBERON:0011143;2.20e-09;24!UBERON:0006555;7.88e-09;15!UBERON:0004819;7.88e-09;15!UBERON:0001285;7.88e-09;15!UBERON:0007684;7.88e-09;15!UBERON:0000945;5.32e-08;5!UBERON:0010039;5.32e-08;5!UBERON:0001225;6.60e-08;12!UBERON:0008987;6.60e-08;12!UBERON:0000489;1.52e-07;29!UBERON:0004907;2.66e-07;5!UBERON:0006554;2.98e-07;30!UBERON:0001008;2.98e-07;30 | |||
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|short_description=p3@SCOC | |||
}} |
Revision as of 02:32, 13 September 2013
Short description: | p3@SCOC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_SCOC_5end |
Coexpression cluster: | NA |
Association with transcript: | 6bp_to_ENST00000506322_5end |
EntrezGene: | SCOC |
HGNC: | 20335 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 1.65e-13 | 10 |
nephron tubule epithelial cell | 1.65e-13 | 10 |
brush border epithelial cell | 6.17e-12 | 3 |
kidney cortex tubule cell | 6.17e-12 | 3 |
epithelial cell of proximal tubule | 6.17e-12 | 3 |
Merkel cell | 3.10e-09 | 2 |
epithelial cell of nephron | 8.42e-09 | 15 |
kidney cortical cell | 6.97e-08 | 12 |
renal cortical epithelial cell | 6.97e-08 | 12 |
kidney cell | 1.08e-07 | 17 |
kidney epithelial cell | 1.08e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
adenocarcinoma | 1.35e-14 | 25 |
clear cell adenocarcinoma | 1.30e-09 | 2 |
signet ring cell adenocarcinoma | 2.23e-09 | 2 |
gastrointestinal system cancer | 7.04e-07 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.