FFCP PHASE1:Hg19::chr4:125121112..125121120,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr4:125121112..125121120,-|id=chr4:125121112..125121120,-|ontology_enrichment_celltype=CL:0000680!1.12e-22!57;CL:0000056!1.12e-22!57;CL:0000355!1.12e-22!57;CL:0000183!1.40e-21!59;CL:0000055!1.04e-20!180;CL:0000187!1.40e-20!54;CL:0000222!1.36e-17!119;CL:0000393!2.68e-17!60;CL:0000211!2.68e-17!60;CL:0000192!9.02e-16!42;CL:0000514!9.02e-16!42;CL:0000220!4.64e-15!246;CL:0002321!9.73e-15!248;CL:0000548!1.08e-11!679;CL:0000004!1.08e-11!679;CL:0000255!1.08e-11!679;CL:0000012!1.95e-11!682;CL:0000144!1.03e-10!625;CL:0002371!2.44e-10!591;CL:0000359!6.81e-09!32;CL:0000003!3.09e-08!722;CL:0000057!1.53e-07!75|ontology_enrichment_celltype_v019=CL:0000307;4.62e-19;3!CL:0002368;1.48e-11;13!CL:0002202;4.53e-11;9!CL:0002632;4.53e-11;9!CL:0000187;3.10e-10;55!CL:0002582;2.98e-09;3!CL:0000393;1.71e-08;61!CL:0000211;1.71e-08;61!CL:0000228;8.79e-08;1!CL:0002372;8.79e-08;1!CL:0000737;2.35e-07;4!CL:0002557;2.42e-07;1!CL:0002601;2.42e-07;1!CL:0000192;8.05e-07;43!CL:0000188;8.23e-07;9|ontology_enrichment_celltype_v019_2=CL:0000068,1.13e-18,3;CL:0000069,1.13e-18,3;CL:0000307,1.13e-18,3;CL:0000377,1.13e-18,3;CL:0000187,4.01e-16,55;CL:0000680,3.71e-15,58;CL:0000056,3.71e-15,58;CL:0000355,3.71e-15,58;CL:0000393,2.76e-14,61;CL:0000211,2.76e-14,61;CL:0002368,1.51e-11,13;CL:0002202,5.19e-11,9;CL:0002632,5.19e-11,9;CL:0000192,6.71e-10,43;CL:0000514,6.71e-10,43;CL:0002582,3.11e-09,3;CL:0000222,2.88e-08,121;CL:0002321,4.83e-08,250;CL:0000228,7.50e-08,1;CL:0002372,7.50e-08,1;CL:0002601,2.21e-07,1;CL:0000737,2.43e-07,4;CL:0002557,3.40e-07,1;CL:0000188,8.66e-07,9|ontology_enrichment_development_v019=CL:0000377;4.62e-19;3!CL:0000355;6.05e-09;58!CL:0000514;8.05e-07;43|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000914!4.65e-25!83;UBERON:0002329!4.65e-25!83;UBERON:0003077!4.65e-25!83;UBERON:0003059!4.65e-25!83;UBERON:0007282!4.65e-25!83;UBERON:0009618!4.65e-25!83;UBERON:0007285!4.65e-25!83;UBERON:0004290!7.27e-23!70;UBERON:0000486!1.82e-20!82;UBERON:0001134!2.59e-20!61;UBERON:0002036!2.59e-20!61;UBERON:0003082!2.59e-20!61;UBERON:0002385!2.99e-19!63;UBERON:0001015!2.99e-19!63;UBERON:0000383!2.99e-19!63;UBERON:0005256!8.53e-16!143;UBERON:0002049!5.18e-13!79;UBERON:0007798!5.18e-13!79;UBERON:0000490!1.02e-11!138;UBERON:0002100!2.74e-11!216;UBERON:0004535!1.10e-10!110;UBERON:0003104!3.47e-10!238;UBERON:0009142!3.47e-10!238;UBERON:0001009!4.64e-10!113;UBERON:0001637!6.13e-10!42;UBERON:0003509!6.13e-10!42;UBERON:0004572!6.13e-10!42;UBERON:0000119!6.43e-10!312;UBERON:0004872!1.63e-09!84;UBERON:0001981!1.64e-09!60;UBERON:0007500!1.64e-09!60;UBERON:0004537!1.64e-09!60;UBERON:0006965!1.64e-09!60;UBERON:0000055!1.68e-09!69;UBERON:0000483!2.51e-09!309;UBERON:0000475!2.19e-08!365;UBERON:0004573!2.88e-08!33;UBERON:0004571!2.88e-08!33;UBERON:0000481!3.79e-08!347|ontology_enrichment_uberon_v019=UBERON:0003126;3.43e-14;7!UBERON:0001005;3.43e-14;7!UBERON:0007196;5.51e-10;15!UBERON:0001558;5.51e-10;15|ontology_enrichment_uberon_v019_2=UBERON:0007503,1.78e-14,78;UBERON:0001134,5.16e-14,62;UBERON:0002036,5.16e-14,62;UBERON:0003082,5.16e-14,62;UBERON:0002329,5.48e-14,71;UBERON:0003059,5.48e-14,71;UBERON:0007282,5.48e-14,71;UBERON:0004290,5.48e-14,71;UBERON:0009618,5.48e-14,71;UBERON:0003126,6.39e-14,7;UBERON:0001005,6.39e-14,7;UBERON:0003077,9.37e-14,72;UBERON:0007285,9.37e-14,72;UBERON:0007524,1.58e-13,73;UBERON:0002385,1.70e-13,64;UBERON:0001015,1.70e-13,64;UBERON:0000383,1.70e-13,64;UBERON:0000486,1.46e-11,83;UBERON:0007196,6.51e-10,15;UBERON:0001558,6.51e-10,15;UBERON:0000490,2.26e-08,148;UBERON:0005256,3.56e-08,122;UBERON:0002100,4.18e-07,199|phase1_expression=0,0,0,0,0,0,0,3.79031924056099,0,0,0,0,0,0.37129905888014,0,0,0,0,0,0.861847406537515,0,0,0,0.136874425072884,0,0,0,0,0,0,0,1.83884244895785,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01210257911091,0,0,0,0,0,0,0,1.33037638477538,0.263504357079378,0,0,0.741568885568859,0,0,0,0,0,0,0.596287222100115,0,0,0,0.419499436209906,0,0,0,0,0,0.402829317109147,0,0,0,0.81014194788176,0.267899184852239,0,0.225222960966644,1.53316637465883,0,0,0,0,0,0.496971951695318,0.25326102332916,0.397227542439656,0.286836620748814,0.354668382198357,0,0,0,1.8672662123986,0.134710672069688,0.490385709340376,0,0,0.234321431833797,0.312160076830321,1.71141546463335,0.149448680551801,0.117434498643765,0,0.140450806702248,0,0.122834317311768,0,0,0,0.910161361938026,0.718618141816238,0.505008341862199,0.125118519871964,0.554128230968366,0,0.612975591598039,0.300476117813194,1.13432183160021,0,0,0,0,0,0,0.18611685633159,0,0,0,0,0,0,0,0,0,0,0.286804595389004,0,0,0,0,0,0,0,0.643240938192885,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr4:125121112..125121120,- | |||
|id=chr4:125121112..125121120,- | |||
|ontology_enrichment_celltype=CL:0000680!1.12e-22!57;CL:0000056!1.12e-22!57;CL:0000355!1.12e-22!57;CL:0000183!1.40e-21!59;CL:0000055!1.04e-20!180;CL:0000187!1.40e-20!54;CL:0000222!1.36e-17!119;CL:0000393!2.68e-17!60;CL:0000211!2.68e-17!60;CL:0000192!9.02e-16!42;CL:0000514!9.02e-16!42;CL:0000220!4.64e-15!246;CL:0002321!9.73e-15!248;CL:0000548!1.08e-11!679;CL:0000004!1.08e-11!679;CL:0000255!1.08e-11!679;CL:0000012!1.95e-11!682;CL:0000144!1.03e-10!625;CL:0002371!2.44e-10!591;CL:0000359!6.81e-09!32;CL:0000003!3.09e-08!722;CL:0000057!1.53e-07!75 | |||
|ontology_enrichment_celltype_v019=CL:0000307;4.62e-19;3!CL:0002368;1.48e-11;13!CL:0002202;4.53e-11;9!CL:0002632;4.53e-11;9!CL:0000187;3.10e-10;55!CL:0002582;2.98e-09;3!CL:0000393;1.71e-08;61!CL:0000211;1.71e-08;61!CL:0000228;8.79e-08;1!CL:0002372;8.79e-08;1!CL:0000737;2.35e-07;4!CL:0002557;2.42e-07;1!CL:0002601;2.42e-07;1!CL:0000192;8.05e-07;43!CL:0000188;8.23e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000068,1.13e-18,3;CL:0000069,1.13e-18,3;CL:0000307,1.13e-18,3;CL:0000377,1.13e-18,3;CL:0000187,4.01e-16,55;CL:0000680,3.71e-15,58;CL:0000056,3.71e-15,58;CL:0000355,3.71e-15,58;CL:0000393,2.76e-14,61;CL:0000211,2.76e-14,61;CL:0002368,1.51e-11,13;CL:0002202,5.19e-11,9;CL:0002632,5.19e-11,9;CL:0000192,6.71e-10,43;CL:0000514,6.71e-10,43;CL:0002582,3.11e-09,3;CL:0000222,2.88e-08,121;CL:0002321,4.83e-08,250;CL:0000228,7.50e-08,1;CL:0002372,7.50e-08,1;CL:0002601,2.21e-07,1;CL:0000737,2.43e-07,4;CL:0002557,3.40e-07,1;CL:0000188,8.66e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000377;4.62e-19;3!CL:0000355;6.05e-09;58!CL:0000514;8.05e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!4.65e-25!83;UBERON:0002329!4.65e-25!83;UBERON:0003077!4.65e-25!83;UBERON:0003059!4.65e-25!83;UBERON:0007282!4.65e-25!83;UBERON:0009618!4.65e-25!83;UBERON:0007285!4.65e-25!83;UBERON:0004290!7.27e-23!70;UBERON:0000486!1.82e-20!82;UBERON:0001134!2.59e-20!61;UBERON:0002036!2.59e-20!61;UBERON:0003082!2.59e-20!61;UBERON:0002385!2.99e-19!63;UBERON:0001015!2.99e-19!63;UBERON:0000383!2.99e-19!63;UBERON:0005256!8.53e-16!143;UBERON:0002049!5.18e-13!79;UBERON:0007798!5.18e-13!79;UBERON:0000490!1.02e-11!138;UBERON:0002100!2.74e-11!216;UBERON:0004535!1.10e-10!110;UBERON:0003104!3.47e-10!238;UBERON:0009142!3.47e-10!238;UBERON:0001009!4.64e-10!113;UBERON:0001637!6.13e-10!42;UBERON:0003509!6.13e-10!42;UBERON:0004572!6.13e-10!42;UBERON:0000119!6.43e-10!312;UBERON:0004872!1.63e-09!84;UBERON:0001981!1.64e-09!60;UBERON:0007500!1.64e-09!60;UBERON:0004537!1.64e-09!60;UBERON:0006965!1.64e-09!60;UBERON:0000055!1.68e-09!69;UBERON:0000483!2.51e-09!309;UBERON:0000475!2.19e-08!365;UBERON:0004573!2.88e-08!33;UBERON:0004571!2.88e-08!33;UBERON:0000481!3.79e-08!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0003126;3.43e-14;7!UBERON:0001005;3.43e-14;7!UBERON:0007196;5.51e-10;15!UBERON:0001558;5.51e-10;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,1.78e-14,78;UBERON:0001134,5.16e-14,62;UBERON:0002036,5.16e-14,62;UBERON:0003082,5.16e-14,62;UBERON:0002329,5.48e-14,71;UBERON:0003059,5.48e-14,71;UBERON:0007282,5.48e-14,71;UBERON:0004290,5.48e-14,71;UBERON:0009618,5.48e-14,71;UBERON:0003126,6.39e-14,7;UBERON:0001005,6.39e-14,7;UBERON:0003077,9.37e-14,72;UBERON:0007285,9.37e-14,72;UBERON:0007524,1.58e-13,73;UBERON:0002385,1.70e-13,64;UBERON:0001015,1.70e-13,64;UBERON:0000383,1.70e-13,64;UBERON:0000486,1.46e-11,83;UBERON:0007196,6.51e-10,15;UBERON:0001558,6.51e-10,15;UBERON:0000490,2.26e-08,148;UBERON:0005256,3.56e-08,122;UBERON:0002100,4.18e-07,199 | |||
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|short_description=p@chr4:125121112..125121120,- | |||
}} |
Revision as of 02:19, 13 September 2013
Short description: | p@chr4:125121112..125121120, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr4:125121112..125121120, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
duct epithelial cell | 1.13e-18 | 3 |
branched duct epithelial cell | 1.13e-18 | 3 |
tracheal epithelial cell | 1.13e-18 | 3 |
tracheoblast | 1.13e-18 | 3 |
muscle cell | 4.01e-16 | 55 |
muscle precursor cell | 3.71e-15 | 58 |
myoblast | 3.71e-15 | 58 |
multi-potent skeletal muscle stem cell | 3.71e-15 | 58 |
electrically responsive cell | 2.76e-14 | 61 |
electrically active cell | 2.76e-14 | 61 |
respiratory epithelial cell | 1.51e-11 | 13 |
epithelial cell of tracheobronchial tree | 5.19e-11 | 9 |
epithelial cell of lower respiratory tract | 5.19e-11 | 9 |
smooth muscle cell | 6.71e-10 | 43 |
smooth muscle myoblast | 6.71e-10 | 43 |
visceral preadipocyte | 3.11e-09 | 3 |
mesodermal cell | 2.88e-08 | 121 |
embryonic cell | 4.83e-08 | 250 |
multinucleate cell | 7.50e-08 | 1 |
myotube | 7.50e-08 | 1 |
uterine smooth muscle cell | 2.21e-07 | 1 |
striated muscle cell | 2.43e-07 | 4 |
fibroblast of pulmonary artery | 3.40e-07 | 1 |
cell of skeletal muscle | 8.66e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 1.78e-14 | 78 |
skeletal muscle tissue | 5.16e-14 | 62 |
striated muscle tissue | 5.16e-14 | 62 |
myotome | 5.16e-14 | 62 |
somite | 5.48e-14 | 71 |
presomitic mesoderm | 5.48e-14 | 71 |
presumptive segmental plate | 5.48e-14 | 71 |
dermomyotome | 5.48e-14 | 71 |
trunk paraxial mesoderm | 5.48e-14 | 71 |
trachea | 6.39e-14 | 7 |
respiratory airway | 6.39e-14 | 7 |
paraxial mesoderm | 9.37e-14 | 72 |
presumptive paraxial mesoderm | 9.37e-14 | 72 |
dense mesenchyme tissue | 1.58e-13 | 73 |
muscle tissue | 1.70e-13 | 64 |
musculature | 1.70e-13 | 64 |
musculature of body | 1.70e-13 | 64 |
multilaminar epithelium | 1.46e-11 | 83 |
tracheobronchial tree | 6.51e-10 | 15 |
lower respiratory tract | 6.51e-10 | 15 |
unilaminar epithelium | 2.26e-08 | 148 |
trunk mesenchyme | 3.56e-08 | 122 |
trunk | 4.18e-07 | 199 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.