FFCP PHASE1:Hg19::chr3:52017454..52017572,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=95|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=177|TSSclassifier=S|UniProt=Q03154,C9JYZ0,C9J6I6,C9JWD4,F8WC59,C9J9D8|association_with_transcript=0bp_to_ENST00000404366,ENST00000465121,ENST00000469863,ENST00000476351,ENST00000476854,ENST00000491318,ENST00000494103,uc003dcp.2,uc003dcq.2,uc011beb.1_5end|description=CAGE_peak_1_at_ACY1_5end|id=chr3:52017454..52017572,+|ontology_enrichment_celltype=CL:0000066!7.85e-19!254;CL:0002321!9.03e-18!248;CL:0000220!1.53e-17!246;CL:0000012!6.24e-15!682;CL:0000548!9.72e-15!679;CL:0000004!9.72e-15!679;CL:0000255!9.72e-15!679;CL:0000223!5.60e-12!59;CL:0002076!5.07e-10!43;CL:0000144!8.22e-10!625;CL:0000325!2.31e-09!39;CL:0002371!9.82e-09!591;CL:0000055!3.15e-08!180;CL:0000183!7.18e-08!59;CL:0000680!8.38e-07!57;CL:0000056!8.38e-07!57;CL:0000355!8.38e-07!57;CL:0000187!9.17e-07!54|ontology_enrichment_celltype_v019=CL:0002076;1.35e-07;42|ontology_enrichment_celltype_v019_2=CL:0000066,8.63e-19,253;CL:0002321,1.32e-17,250;CL:0000223,1.38e-11,58;CL:0002076,1.26e-09,42;CL:0002077,4.95e-07,34;CL:0000680,8.38e-07,58;CL:0000056,8.38e-07,58;CL:0000355,8.38e-07,58;CL:0000187,9.22e-07,55|ontology_enrichment_development_v019=CL:0000223;5.88e-07;58|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003104!6.51e-16!238;UBERON:0009142!6.51e-16!238;UBERON:0002100!5.29e-13!216;UBERON:0005256!3.02e-11!143;UBERON:0004119!9.10e-11!169;UBERON:0000925!9.10e-11!169;UBERON:0006595!9.10e-11!169;UBERON:0000481!1.11e-10!347;UBERON:0000486!1.61e-09!82;UBERON:0001048!3.64e-09!168;UBERON:0001007!5.63e-08!155;UBERON:0001555!5.63e-08!155;UBERON:0007026!5.63e-08!155;UBERON:0004290!8.59e-08!70;UBERON:0000914!1.40e-07!83;UBERON:0002329!1.40e-07!83;UBERON:0003077!1.40e-07!83;UBERON:0003059!1.40e-07!83;UBERON:0007282!1.40e-07!83;UBERON:0009618!1.40e-07!83;UBERON:0007285!1.40e-07!83;UBERON:0001041!1.89e-07!98;UBERON:0004921!2.02e-07!129;UBERON:0004185!2.02e-07!129;UBERON:0000475!4.55e-07!365;UBERON:0005085!5.90e-07!29|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002100,3.23e-13,199;UBERON:0003104,1.34e-11,160;UBERON:0009142,1.34e-11,160;UBERON:0000486,1.61e-09,83;UBERON:0004119,4.58e-09,160;UBERON:0000925,4.58e-09,160;UBERON:0006595,4.58e-09,160;UBERON:0005256,6.42e-09,122;UBERON:0007503,1.32e-08,78;UBERON:0001048,5.48e-08,160;UBERON:0002329,8.52e-08,71;UBERON:0003059,8.52e-08,71;UBERON:0007282,8.52e-08,71;UBERON:0004290,8.52e-08,71;UBERON:0009618,8.52e-08,71;UBERON:0000490,1.15e-07,148;UBERON:0003077,1.82e-07,72;UBERON:0007285,1.82e-07,72;UBERON:0007524,2.32e-07,73;UBERON:0005085,5.63e-07,31|phase1_expression=22.7097974088196,90.5645216058859,25.5127471413708,28.0205235388765,47.8248371037198,17.4467704820074,40.5279805069297,20.8467558230854,68.1694489601579,18.4300452376132,59.3130992776563,20.9703717244965,21.3651252365047,18.688719296967,29.4943664397845,22.1867298329086,23.5050865929351,20.4486825308465,20.4931775492013,24.7473326734344,34.2721161290345,25.7032871612032,6.5834277040143,7.8018422291544,8.41135685285179,6.80079311156766,5.41863890369642,5.19491156670283,2.75354993794233,3.45446458287491,4.79929982279836,46.8904824484253,47.5905351669635,53.6143314741842,1.70427841276664,8.53015394924529,20.2584303141045,3.87796785972314,4.41197784434312,2.17010870715852,15.8979986710346,14.2513213048351,11.07574940827,2.61716829803216,1.13362783106643,2.66842467306598,1.39457422143411,3.28934310417461,3.40677007984614,3.16461631554365,2.0492856522328,3.07426898855161,1.03423704220986,1.93645405075148,0,2.63539275359647,2.18324920046277,1.12361742222542,2.14258724659632,2.56743221660875,1.91801137739712,1.31940520074686,2.39356389145958,1.27867425159808,2.03146467040009,2.26954089876456,2.4912889959823,1.25624332628372,2.08593167368081,2.17188844705117,3.02699751316684,2.20966581592539,3.48108626184973,7.6051903072299,7.44115049877652,5.87044207423452,5.72876018847125,7.2084908563923,2.89306056054744,1.14005097496499,3.38158351238453,2.00930569141097,3.51992488922645,4.91524750135918,8.00558328477199,5.54749289336459,4.40435585739614,5.17277195959035,3.96626923670917,2.86216126360609,2.84606484554724,2.93618594685469,2.29363936875137,11.8954195721123,8.40762844472304,28.7088652404834,0.393419540227666,1.57204305099666,1.02800749499755,12.3718006589102,3.58514493296949,1.89379122293893,7.79306913631645,9.58129929212493,2.3568472597987,2.43687284041983,2.70803863765016,8.83830106107159,11.3151632377094,16.6082283649713,17.4100511205084,9.27369874352168,1.63115219478266,3.74557159325598,5.22677619024884,8.0449633315272,1.53288197440768,1.71813722741315,1.77113784413652,1.91139248594458,1.30216690771284,2.85135613334512,2.55977702432214,2.8157054453972,1.24930726552346,4.73554504088034,5.74789597844733,0.604820229674197,1.87208137048455,1.73789284659359,63.38978524163,30.1815386866636,20.7137350186519,10.1202962667679,22.0588680679791,2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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=95 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=177 | |||
|TSSclassifier=S | |||
|UniProt=Q03154,C9JYZ0,C9J6I6,C9JWD4,F8WC59,C9J9D8 | |||
|association_with_transcript=0bp_to_ENST00000404366,ENST00000465121,ENST00000469863,ENST00000476351,ENST00000476854,ENST00000491318,ENST00000494103,uc003dcp.2,uc003dcq.2,uc011beb.1_5end | |||
|description=CAGE_peak_1_at_ACY1_5end | |||
|id=chr3:52017454..52017572,+ | |||
|ontology_enrichment_celltype=CL:0000066!7.85e-19!254;CL:0002321!9.03e-18!248;CL:0000220!1.53e-17!246;CL:0000012!6.24e-15!682;CL:0000548!9.72e-15!679;CL:0000004!9.72e-15!679;CL:0000255!9.72e-15!679;CL:0000223!5.60e-12!59;CL:0002076!5.07e-10!43;CL:0000144!8.22e-10!625;CL:0000325!2.31e-09!39;CL:0002371!9.82e-09!591;CL:0000055!3.15e-08!180;CL:0000183!7.18e-08!59;CL:0000680!8.38e-07!57;CL:0000056!8.38e-07!57;CL:0000355!8.38e-07!57;CL:0000187!9.17e-07!54 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.35e-07;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,8.63e-19,253;CL:0002321,1.32e-17,250;CL:0000223,1.38e-11,58;CL:0002076,1.26e-09,42;CL:0002077,4.95e-07,34;CL:0000680,8.38e-07,58;CL:0000056,8.38e-07,58;CL:0000355,8.38e-07,58;CL:0000187,9.22e-07,55 | |||
|ontology_enrichment_development_v019=CL:0000223;5.88e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003104!6.51e-16!238;UBERON:0009142!6.51e-16!238;UBERON:0002100!5.29e-13!216;UBERON:0005256!3.02e-11!143;UBERON:0004119!9.10e-11!169;UBERON:0000925!9.10e-11!169;UBERON:0006595!9.10e-11!169;UBERON:0000481!1.11e-10!347;UBERON:0000486!1.61e-09!82;UBERON:0001048!3.64e-09!168;UBERON:0001007!5.63e-08!155;UBERON:0001555!5.63e-08!155;UBERON:0007026!5.63e-08!155;UBERON:0004290!8.59e-08!70;UBERON:0000914!1.40e-07!83;UBERON:0002329!1.40e-07!83;UBERON:0003077!1.40e-07!83;UBERON:0003059!1.40e-07!83;UBERON:0007282!1.40e-07!83;UBERON:0009618!1.40e-07!83;UBERON:0007285!1.40e-07!83;UBERON:0001041!1.89e-07!98;UBERON:0004921!2.02e-07!129;UBERON:0004185!2.02e-07!129;UBERON:0000475!4.55e-07!365;UBERON:0005085!5.90e-07!29 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,3.23e-13,199;UBERON:0003104,1.34e-11,160;UBERON:0009142,1.34e-11,160;UBERON:0000486,1.61e-09,83;UBERON:0004119,4.58e-09,160;UBERON:0000925,4.58e-09,160;UBERON:0006595,4.58e-09,160;UBERON:0005256,6.42e-09,122;UBERON:0007503,1.32e-08,78;UBERON:0001048,5.48e-08,160;UBERON:0002329,8.52e-08,71;UBERON:0003059,8.52e-08,71;UBERON:0007282,8.52e-08,71;UBERON:0004290,8.52e-08,71;UBERON:0009618,8.52e-08,71;UBERON:0000490,1.15e-07,148;UBERON:0003077,1.82e-07,72;UBERON:0007285,1.82e-07,72;UBERON:0007524,2.32e-07,73;UBERON:0005085,5.63e-07,31 | |||
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| |||
|short_description=p1@ACY1 | |||
}} |
Revision as of 00:46, 13 September 2013
Short description: | p1@ACY1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_ACY1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000404366, ENST00000465121, ENST00000469863, ENST00000476351, ENST00000476854, ENST00000491318, ENST00000494103, uc003dcp.2, uc003dcq.2, uc011beb.1_5end |
EntrezGene: | ACY1 |
HGNC: | 177 |
UniProt: | Q03154C9JYZ0C9J6I6C9JWD4F8WC59C9J9D8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 8.63e-19 | 253 |
embryonic cell | 1.32e-17 | 250 |
endodermal cell | 1.38e-11 | 58 |
endo-epithelial cell | 1.26e-09 | 42 |
ecto-epithelial cell | 4.95e-07 | 34 |
muscle precursor cell | 8.38e-07 | 58 |
myoblast | 8.38e-07 | 58 |
multi-potent skeletal muscle stem cell | 8.38e-07 | 58 |
muscle cell | 9.22e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
trunk | 3.23e-13 | 199 |
mesenchyme | 1.34e-11 | 160 |
entire embryonic mesenchyme | 1.34e-11 | 160 |
multilaminar epithelium | 1.61e-09 | 83 |
endoderm-derived structure | 4.58e-09 | 160 |
endoderm | 4.58e-09 | 160 |
presumptive endoderm | 4.58e-09 | 160 |
trunk mesenchyme | 6.42e-09 | 122 |
epithelial vesicle | 1.32e-08 | 78 |
primordium | 5.48e-08 | 160 |
somite | 8.52e-08 | 71 |
presomitic mesoderm | 8.52e-08 | 71 |
presumptive segmental plate | 8.52e-08 | 71 |
dermomyotome | 8.52e-08 | 71 |
trunk paraxial mesoderm | 8.52e-08 | 71 |
unilaminar epithelium | 1.15e-07 | 148 |
paraxial mesoderm | 1.82e-07 | 72 |
presumptive paraxial mesoderm | 1.82e-07 | 72 |
dense mesenchyme tissue | 2.32e-07 | 73 |
ectodermal placode | 5.63e-07 | 31 |
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