FFCP PHASE1:Hg19::chr3:47205499..47205530,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=29072|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=18420|TSSclassifier=S|UniProt=F2Z317,F5H340,Q9BYW2|association_with_transcript=-32bp_to_ENST00000451092,ENST00000543224,NM_014159,uc003cqs.2,uc003cqv.2_5end|description=CAGE_peak_3_at_SETD2_5end|id=chr3:47205499..47205530,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:0050687!2.15e-07!143|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!8.39e-24!115;UBERON:0000073!1.23e-08!94;UBERON:0001016!1.23e-08!94;UBERON:0000924!3.01e-08!173;UBERON:0006601!3.01e-08!173;UBERON:0004121!3.17e-08!169;UBERON:0001017!9.33e-08!82;UBERON:0001049!3.38e-07!57;UBERON:0005068!3.38e-07!57;UBERON:0006241!3.38e-07!57;UBERON:0007135!3.38e-07!57;UBERON:0001007!3.76e-07!155;UBERON:0001555!3.76e-07!155;UBERON:0007026!3.76e-07!155;UBERON:0005743!5.41e-07!86;UBERON:0000955!5.79e-07!69;UBERON:0006238!5.79e-07!69|ontology_enrichment_uberon_v019=UBERON:0000922;5.36e-08;49!UBERON:0007023;1.72e-07;114|ontology_enrichment_uberon_v019_2=UBERON:0007023,8.50e-26,114;UBERON:0011216,1.34e-12,223;UBERON:0001016,1.30e-10,89;UBERON:0001049,9.69e-09,56;UBERON:0005068,9.69e-09,56;UBERON:0006241,9.69e-09,56;UBERON:0007135,9.69e-09,56;UBERON:0001017,1.26e-08,81;UBERON:0000955,2.37e-08,68;UBERON:0006238,2.37e-08,68;UBERON:0004121,3.18e-08,171;UBERON:0000924,3.18e-08,171;UBERON:0006601,3.18e-08,171;UBERON:0000073,5.19e-08,53;UBERON:0002616,5.19e-08,53;UBERON:0002780,7.31e-07,41;UBERON:0001890,7.31e-07,41;UBERON:0003080,7.31e-07,41;UBERON:0006240,7.31e-07,41|phase1_expression=0.181678379270557,0.428201047781966,0.845726424575827,0,0,0,0,0,1.04474251279935,0.245733936501509,0,0,0.263766978228454,0.74259811776028,0.662794751455832,0,0,0.730310090387373,0.487932798790507,0,0,0,1.14494394852423,2.05311637609326,1.75759695432724,1.14620108621927,2.38091709404843,1.33808328233255,1.18009283054671,0.383829398097213,1.23852898652861,0.919421224478927,0.6024118375565,0.369754010166788,2.16908161624845,0.568676929949686,0.587200878669695,2.76997704265939,1.60435557976113,1.95309783644267,3.58264758783879,3.2389366601898,3.8636335145128,0.581592955118259,0.377875943688809,1.21292030593908,0.697287110717054,0,0.309706370895104,0.28769239232215,0.256160706529101,0,0,3.22742341791913,0,0.564727018627814,0.272906150057846,0,0,0,0,0.659702600373432,0.797854630486527,1.70489900213078,0.580418477257168,0,0.622822248995575,0,0,0,0,0,0,0,0,0,0.44931452458598,0.150176892841506,0.64290234678832,0.285012743741249,0,0.182664153764634,0,1.09227722252426,0.889509253863555,1.70692089026603,0.400395987036012,1.72425731986345,0.661044872784862,0,3.41527781465669,1.17447437874188,2.29363936875137,0,0,0.790152254325231,1.7703879310245,0.786021525498329,3.70082698199117,0.501559486172034,1.30368906653436,0.473447805734733,0,0.891283655081389,0.883817722424512,0.221533894583621,0.812411591295047,0.128091319725675,0.390178042679635,0.493313713811028,0.829050053357545,0.869409257205157,0.14828656316206,0.535081656179426,1.04535523804977,0.679856056185397,0.383220493601921,0.68725489096526,0.506039384039006,0.637130828648193,1.30216690771284,0,0.451725357233318,0.255973222308837,0,0.473554504088034,0,2.82249440514625,4.01160293675261,1.73789284659359,2.43806866313962,1.34140171940727,0.255725123687061,0,0.50133791063589,0.289693037921647,0.795285947051099,0.486634870302636,0.567208902984407,1.33037638477538,1.14185221401064,2.35762335895883,0.728590576585084,1.48313777113772,1.62273696827342,1.21890816109487,0.664789802594326,1.19245312152671,1.14398982156026,0,0.198762407366705,4.30117297553062,0.694281003215189,0.56530794192401,0,1.10047216776027,1.04497483268405,0.516833518338658,0.71153252537342,0.66944122552934,0,0,0.732186172644509,0.735326160691737,0,1.60739510911344,2.02076435363553,2.81528701208306,0,1.89853131913626,0.916008719652036,9.22462922052443,0,0,1.98788780678127,0.633152558322899,0.397227542439656,1.43418310374407,2.12801029319014,1.68203280042692,0,0.74000264525148,1.8672662123986,0.538842688278752,0.817309515567294,0.302714855289863,1.72852777344,0,0.624320153660641,0,0.149448680551801,0,0.485618833104395,0.140450806702248,0.204154171254893,0.982674538494144,0.929932030581889,1.18800285728205,2.22540236350701,0,0,0.673344455816265,1.50142223846357,1.6623846929051,1.75591048352335,1.22595118319608,2.85452311922534,0.680593098960126,0,1.06778694409284,0.423863802319124,0.600182192168805,0.515262646192195,1.28820270022815,1.30281799432113,1.0126579934476,0.292311015483596,0,1.28869858099219,0.161646056818812,1.06502877754984,0.201504196455281,0.169560592310488,0,0.818238361772504,1.14721838155602,0.853815942907168,1.72288698817931,1.04574548582567,1.24393266018445,1.7662459561294,1.09493207722749,1.56449532329816,1.28648187638577,0,0.464367928031979,0,0.828147600278907,0.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22038069745642,0.641136984606466|short_description=p3@SETD2}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=29072 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18420 | |||
|TSSclassifier=S | |||
|UniProt=F2Z317,F5H340,Q9BYW2 | |||
|association_with_transcript=-32bp_to_ENST00000451092,ENST00000543224,NM_014159,uc003cqs.2,uc003cqv.2_5end | |||
|description=CAGE_peak_3_at_SETD2_5end | |||
|id=chr3:47205499..47205530,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!2.15e-07!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!8.39e-24!115;UBERON:0000073!1.23e-08!94;UBERON:0001016!1.23e-08!94;UBERON:0000924!3.01e-08!173;UBERON:0006601!3.01e-08!173;UBERON:0004121!3.17e-08!169;UBERON:0001017!9.33e-08!82;UBERON:0001049!3.38e-07!57;UBERON:0005068!3.38e-07!57;UBERON:0006241!3.38e-07!57;UBERON:0007135!3.38e-07!57;UBERON:0001007!3.76e-07!155;UBERON:0001555!3.76e-07!155;UBERON:0007026!3.76e-07!155;UBERON:0005743!5.41e-07!86;UBERON:0000955!5.79e-07!69;UBERON:0006238!5.79e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;5.36e-08;49!UBERON:0007023;1.72e-07;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,8.50e-26,114;UBERON:0011216,1.34e-12,223;UBERON:0001016,1.30e-10,89;UBERON:0001049,9.69e-09,56;UBERON:0005068,9.69e-09,56;UBERON:0006241,9.69e-09,56;UBERON:0007135,9.69e-09,56;UBERON:0001017,1.26e-08,81;UBERON:0000955,2.37e-08,68;UBERON:0006238,2.37e-08,68;UBERON:0004121,3.18e-08,171;UBERON:0000924,3.18e-08,171;UBERON:0006601,3.18e-08,171;UBERON:0000073,5.19e-08,53;UBERON:0002616,5.19e-08,53;UBERON:0002780,7.31e-07,41;UBERON:0001890,7.31e-07,41;UBERON:0003080,7.31e-07,41;UBERON:0006240,7.31e-07,41 | |||
|phase1_expression=0.181678379270557,0.428201047781966,0.845726424575827,0,0,0,0,0,1.04474251279935,0.245733936501509,0,0,0.263766978228454,0.74259811776028,0.662794751455832,0,0,0.730310090387373,0.487932798790507,0,0,0,1.14494394852423,2.05311637609326,1.75759695432724,1.14620108621927,2.38091709404843,1.33808328233255,1.18009283054671,0.383829398097213,1.23852898652861,0.919421224478927,0.6024118375565,0.369754010166788,2.16908161624845,0.568676929949686,0.587200878669695,2.76997704265939,1.60435557976113,1.95309783644267,3.58264758783879,3.2389366601898,3.8636335145128,0.581592955118259,0.377875943688809,1.21292030593908,0.697287110717054,0,0.309706370895104,0.28769239232215,0.256160706529101,0,0,3.22742341791913,0,0.564727018627814,0.272906150057846,0,0,0,0,0.659702600373432,0.797854630486527,1.70489900213078,0.580418477257168,0,0.622822248995575,0,0,0,0,0,0,0,0,0,0.44931452458598,0.150176892841506,0.64290234678832,0.285012743741249,0,0.182664153764634,0,1.09227722252426,0.889509253863555,1.70692089026603,0.400395987036012,1.72425731986345,0.661044872784862,0,3.41527781465669,1.17447437874188,2.29363936875137,0,0,0.790152254325231,1.7703879310245,0.786021525498329,3.70082698199117,0.501559486172034,1.30368906653436,0.473447805734733,0,0.891283655081389,0.883817722424512,0.221533894583621,0.812411591295047,0.128091319725675,0.390178042679635,0.493313713811028,0.829050053357545,0.869409257205157,0.14828656316206,0.535081656179426,1.04535523804977,0.679856056185397,0.383220493601921,0.68725489096526,0.506039384039006,0.637130828648193,1.30216690771284,0,0.451725357233318,0.255973222308837,0,0.473554504088034,0,2.82249440514625,4.01160293675261,1.73789284659359,2.43806866313962,1.34140171940727,0.255725123687061,0,0.50133791063589,0.289693037921647,0.795285947051099,0.486634870302636,0.567208902984407,1.33037638477538,1.14185221401064,2.35762335895883,0.728590576585084,1.48313777113772,1.62273696827342,1.21890816109487,0.664789802594326,1.19245312152671,1.14398982156026,0,0.198762407366705,4.30117297553062,0.694281003215189,0.56530794192401,0,1.10047216776027,1.04497483268405,0.516833518338658,0.71153252537342,0.66944122552934,0,0,0.732186172644509,0.735326160691737,0,1.60739510911344,2.02076435363553,2.81528701208306,0,1.89853131913626,0.916008719652036,9.22462922052443,0,0,1.98788780678127,0.633152558322899,0.397227542439656,1.43418310374407,2.12801029319014,1.68203280042692,0,0.74000264525148,1.8672662123986,0.538842688278752,0.817309515567294,0.302714855289863,1.72852777344,0,0.624320153660641,0,0.149448680551801,0,0.485618833104395,0.140450806702248,0.204154171254893,0.982674538494144,0.929932030581889,1.18800285728205,2.22540236350701,0,0,0.673344455816265,1.50142223846357,1.6623846929051,1.75591048352335,1.22595118319608,2.85452311922534,0.680593098960126,0,1.06778694409284,0.423863802319124,0.600182192168805,0.515262646192195,1.28820270022815,1.30281799432113,1.0126579934476,0.292311015483596,0,1.28869858099219,0.161646056818812,1.06502877754984,0.201504196455281,0.169560592310488,0,0.818238361772504,1.14721838155602,0.853815942907168,1.72288698817931,1.04574548582567,1.24393266018445,1.7662459561294,1.09493207722749,1.56449532329816,1.28648187638577,0,0.464367928031979,0,0.828147600278907,0.337169380156203,0.241011029883482,0.220587945464788,1.08939722046203,0.949082476444386,0.134831308160164,0.784885860501384,0.769494313892781,0.738155454624648,0,0,0,0,0.982827216677626,5.31710916013264,1.32438929824395,0.983907508344908,0.171567810298526,1.09750285408626,0,1.00528972411631,0.833296006426766,0,0,0,0.34779121492523,0.587043471179108,0.288732895522148,0,0.761016608938393,0,0.858486162094873,1.23108503043699,0,1.0404181360211,0.93733833986777,0.839910640994298,0.283550194484773,0.985143749731331,0.871901815541886,1.53353071666084,2.46331618947972,1.58487181223807,3.31724984865235,5.04419836959365,6.69084897159814,0.190493682876507,1.90994212779139,1.17217447210047,0,0.102827492703324,0,0,0.336393253036082,0.43596006883328,0.66004457238855,1.16344544182,0,0,1.06375246633948,0,0.257207374262142,0,0.532844358032199,0.714889968290738,0.542621605391443,0.823240336780769,0.65147236858747,1.06617584622764,0,0.301439377059586,0,0.899756920638513,1.2162378064119,0,0,0,0,0,0.434343920002738,0,1.43248770591916,1.79336230389644,1.97030760201927,2.80315847317372,3.08023287071396,2.54094624222463,3.90419561572865,0.773288812777695,0.670065061337395,1.91381625495949,7.49007023947182,0,2.48649308061621,1.2269149171914,1.50051156317903,0.542530047399471,0.831883446123229,0.535286966391485,0.157702415033935,1.63997980989798,0.902838299183157,0,0,0.664225598535437,1.10621501125022,0.521301686808497,0.195801157462741,0,2.06768026122887,2.5885704098234,2.98837161849644,0.606255142892519,0,0.30239029332968,0.992431231275107,0.153461973288062,0.841980283299221,0.896974044789907,1.02341449813341,1.60853921143608,0,0.771048469013278,1.24293207719189,1.06765302817952,1.03850885836724,0.232420756919918,2.29632954224082,1.203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| |||
|short_description=p3@SETD2 | |||
}} |
Revision as of 00:23, 13 September 2013
Short description: | p3@SETD2 |
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Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_SETD2_5end |
Coexpression cluster: | NA |
Association with transcript: | -32bp_to_ENST00000451092, ENST00000543224, NM_014159, uc003cqs.2, uc003cqv.2_5end |
EntrezGene: | SETD2 |
HGNC: | 18420 |
UniProt: | F2Z317F5H340Q9BYW2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 8.50e-26 | 114 |
organ system subdivision | 1.34e-12 | 223 |
nervous system | 1.30e-10 | 89 |
neural tube | 9.69e-09 | 56 |
neural rod | 9.69e-09 | 56 |
future spinal cord | 9.69e-09 | 56 |
neural keel | 9.69e-09 | 56 |
central nervous system | 1.26e-08 | 81 |
brain | 2.37e-08 | 68 |
future brain | 2.37e-08 | 68 |
ectoderm-derived structure | 3.18e-08 | 171 |
ectoderm | 3.18e-08 | 171 |
presumptive ectoderm | 3.18e-08 | 171 |
regional part of nervous system | 5.19e-08 | 53 |
regional part of brain | 5.19e-08 | 53 |
regional part of forebrain | 7.31e-07 | 41 |
forebrain | 7.31e-07 | 41 |
anterior neural tube | 7.31e-07 | 41 |
future forebrain | 7.31e-07 | 41 |
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