FFCP PHASE1:Hg19::chr3:197205979..197205991,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C139|description=CAGE_peak_at_chr3:197205979..197205991,+|id=chr3:197205979..197205991,+|ontology_enrichment_celltype=CL:0000066!1.39e-08!254;CL:0000159!1.52e-08!2|ontology_enrichment_celltype_v019=CL:0000128;6.79e-20;7!CL:0000126;6.79e-20;7!CL:0000127;6.79e-20;7!CL:0002605;2.74e-12;3!CL:0000243;8.39e-09;15!CL:0000125;8.39e-09;15!CL:0000095;5.63e-08;17!CL:0002149;7.58e-07;6!CL:0002255;7.58e-07;6|ontology_enrichment_celltype_v019_2=CL:0000128,7.13e-20,7;CL:0000126,7.13e-20,7;CL:0000127,7.13e-20,7;CL:0002453,7.13e-20,7;CL:0002605,2.89e-12,3;CL:0000243,8.55e-09,15;CL:0000125,8.55e-09,15;CL:0000030,8.55e-09,15;CL:0000339,8.55e-09,15;CL:0000095,5.73e-08,17;CL:0000123,5.73e-08,17;CL:0002149,7.58e-07,6;CL:0002255,7.58e-07,6|ontology_enrichment_development_v019=CL:0000339;8.39e-09;15|ontology_enrichment_disease=DOID:305!1.52e-09!106;DOID:0050687!1.37e-07!143;DOID:162!1.47e-07!235;DOID:14566!2.90e-07!239|ontology_enrichment_disease_v019=DOID:3001;7.58e-07;6|ontology_enrichment_disease_v019_2=DOID:3001,7.58e-07,6|ontology_enrichment_uberon=UBERON:0001737!2.74e-10!9|ontology_enrichment_uberon_v019=UBERON:0001282;5.97e-34;1!UBERON:0009842;5.97e-34;1!UBERON:0003704;5.97e-34;1!UBERON:0001171;5.97e-34;1!UBERON:0001172;5.97e-34;1!UBERON:0001280;2.74e-12;3!UBERON:0004647;2.74e-12;3!UBERON:0002394;1.50e-09;4!UBERON:0003928;1.50e-09;4|ontology_enrichment_uberon_v019_2=UBERON:0001282,3.61e-34,1;UBERON:0009842,3.61e-34,1;UBERON:0003704,3.61e-34,1;UBERON:0001171,3.61e-34,1;UBERON:0001172,3.61e-34,1;UBERON:0001280,2.31e-12,3;UBERON:0004647,2.31e-12,3;UBERON:0005171,2.31e-12,3;UBERON:0002394,8.02e-07,6;UBERON:0003928,8.02e-07,6|phase1_expression=0,0,0,0,0,0.872338524100369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23186982565596,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0.110293972732394,0.217879444092406,0,0.134831308160164,0,0.38474715694639,0,0,0,0,0,0,0,0,0,0,0.329250856225877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289562613335158,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0.325378394664303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.632758849437452,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.92006220270902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241192877250816,0,0,0,0,0,0,0,1.93701494939902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0.485560759068186,0,0,0,0,0,0,0,0,0,0,0,0,0.520679215005393,0,0.0870592065804026,0,0,0.0967563312890851,0,0.0821154570532092,0,0,0,0,0,0,0,0.240476460754601,0,0,0,0,0,0,1.86378803348149,0,0.67952103036807,0.627617077873999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170388021785422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189403005275089,0,0,0,0,0.310874401165561,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20008329398946,0,0,0,0,0,0,0.226705925512272,0.231522474323834,0,0.537266523244462,0,0.219284049578707,0,0,0,0,0.345430341731199,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0.163771917510097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171488009437418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.34288939930048,0,0.111855431797792,0.098150233615243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr3:197205979..197205991,+}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C139 | |||
|description=CAGE_peak_at_chr3:197205979..197205991,+ | |||
|id=chr3:197205979..197205991,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.39e-08!254;CL:0000159!1.52e-08!2 | |||
|ontology_enrichment_celltype_v019=CL:0000128;6.79e-20;7!CL:0000126;6.79e-20;7!CL:0000127;6.79e-20;7!CL:0002605;2.74e-12;3!CL:0000243;8.39e-09;15!CL:0000125;8.39e-09;15!CL:0000095;5.63e-08;17!CL:0002149;7.58e-07;6!CL:0002255;7.58e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000128,7.13e-20,7;CL:0000126,7.13e-20,7;CL:0000127,7.13e-20,7;CL:0002453,7.13e-20,7;CL:0002605,2.89e-12,3;CL:0000243,8.55e-09,15;CL:0000125,8.55e-09,15;CL:0000030,8.55e-09,15;CL:0000339,8.55e-09,15;CL:0000095,5.73e-08,17;CL:0000123,5.73e-08,17;CL:0002149,7.58e-07,6;CL:0002255,7.58e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000339;8.39e-09;15 | |||
|ontology_enrichment_disease=DOID:305!1.52e-09!106;DOID:0050687!1.37e-07!143;DOID:162!1.47e-07!235;DOID:14566!2.90e-07!239 | |||
|ontology_enrichment_disease_v019=DOID:3001;7.58e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3001,7.58e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0001737!2.74e-10!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0001282;5.97e-34;1!UBERON:0009842;5.97e-34;1!UBERON:0003704;5.97e-34;1!UBERON:0001171;5.97e-34;1!UBERON:0001172;5.97e-34;1!UBERON:0001280;2.74e-12;3!UBERON:0004647;2.74e-12;3!UBERON:0002394;1.50e-09;4!UBERON:0003928;1.50e-09;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001282,3.61e-34,1;UBERON:0009842,3.61e-34,1;UBERON:0003704,3.61e-34,1;UBERON:0001171,3.61e-34,1;UBERON:0001172,3.61e-34,1;UBERON:0001280,2.31e-12,3;UBERON:0004647,2.31e-12,3;UBERON:0005171,2.31e-12,3;UBERON:0002394,8.02e-07,6;UBERON:0003928,8.02e-07,6 | |||
|phase1_expression=0,0,0,0,0,0.872338524100369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23186982565596,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0.110293972732394,0.217879444092406,0,0.134831308160164,0,0.38474715694639,0,0,0,0,0,0,0,0,0,0,0.329250856225877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289562613335158,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0.325378394664303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.632758849437452,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.92006220270902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241192877250816,0,0,0,0,0,0,0,1.93701494939902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0.485560759068186,0,0,0,0,0,0,0,0,0,0,0,0,0.520679215005393,0,0.0870592065804026,0,0,0.0967563312890851,0,0.0821154570532092,0,0,0,0,0,0,0,0.240476460754601,0,0,0,0,0,0,1.86378803348149,0,0.67952103036807,0.627617077873999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170388021785422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189403005275089,0,0,0,0,0.310874401165561,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20008329398946,0,0,0,0,0,0,0.226705925512272,0.231522474323834,0,0.537266523244462,0,0.219284049578707,0,0,0,0,0.345430341731199,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0.163771917510097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171488009437418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.34288939930048,0,0.111855431797792,0.098150233615243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr3:197205979..197205991,+ | |||
}} |
Revision as of 23:36, 12 September 2013
Short description: | p@chr3:197205979..197205991, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:197205979..197205991, + |
Coexpression cluster: | C139_astrocytoma_skin_salivary_gall_serous_Mallassezderived_renal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
oligodendrocyte | 7.13e-20 | 7 |
macroglial cell | 7.13e-20 | 7 |
astrocyte | 7.13e-20 | 7 |
oligodendrocyte precursor cell | 7.13e-20 | 7 |
astrocyte of the cerebral cortex | 2.89e-12 | 3 |
glial cell (sensu Vertebrata) | 8.55e-09 | 15 |
glial cell | 8.55e-09 | 15 |
glioblast | 8.55e-09 | 15 |
glioblast (sensu Vertebrata) | 8.55e-09 | 15 |
neuron associated cell | 5.73e-08 | 17 |
neuron associated cell (sensu Vertebrata) | 5.73e-08 | 17 |
epithelial cell of uterus | 7.58e-07 | 6 |
stromal cell of endometrium | 7.58e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
intralobular bile duct | 3.61e-34 | 1 |
acinus | 3.61e-34 | 1 |
intrahepatic bile duct | 3.61e-34 | 1 |
portal lobule | 3.61e-34 | 1 |
hepatic acinus | 3.61e-34 | 1 |
liver parenchyma | 2.31e-12 | 3 |
liver lobule | 2.31e-12 | 3 |
hepatic duct | 2.31e-12 | 3 |
bile duct | 8.02e-07 | 6 |
digestive system duct | 8.02e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
female reproductive endometrioid cancer | 7.58e-07 | 6 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.