FFCP PHASE1:Hg19::chr3:154797300..154797313,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4311|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=7154|TSSclassifier=S|UniProt=P08473|association_with_transcript=-122bp_to_ENST00000460393,ENST00000491597,NM_000902,uc003fab.1_5end|coexpression_cluster_id=C4297|description=CAGE_peak_21_at_MME_5end|id=chr3:154797300..154797313,+|ontology_enrichment_celltype=CL:0000055!1.08e-25!180;CL:0000057!2.20e-15!75;CL:0002620!3.00e-11!23;CL:0002551!4.32e-09!6;CL:0000188!4.52e-09!9;CL:0000680!3.42e-08!57;CL:0000056!3.42e-08!57;CL:0000355!3.42e-08!57;CL:0000148!9.34e-07!10;CL:0000541!9.34e-07!10|ontology_enrichment_celltype_v019=CL:0002567;5.34e-20;3!CL:0000148;2.79e-16;10!CL:0002588;7.86e-15;2!CL:0000147;1.42e-11;14!CL:0002551;3.66e-10;6!CL:0000594;9.29e-10;3!CL:0000680;4.17e-09;7!CL:0000710;4.92e-08;20!CL:0002574;6.10e-08;1!CL:0002566;6.10e-08;1!CL:0000817;1.26e-07;1!CL:0000188;5.00e-07;9|ontology_enrichment_celltype_v019_2=CL:0002567,4.12e-20,3;CL:0000148,2.71e-16,10;CL:0000541,2.71e-16,10;CL:0002588,8.43e-15,2;CL:0000147,1.39e-11,14;CL:0002551,3.12e-10,6;CL:0000594,9.72e-10,3;CL:0000710,4.85e-08,20;CL:0002574,5.70e-08,1;CL:0002566,7.45e-08,1;CL:0000188,5.44e-07,9|ontology_enrichment_development_v019=UBERON:0000358;6.10e-08;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000914!2.32e-12!83;UBERON:0002329!2.32e-12!83;UBERON:0003077!2.32e-12!83;UBERON:0003059!2.32e-12!83;UBERON:0007282!2.32e-12!83;UBERON:0009618!2.32e-12!83;UBERON:0007285!2.32e-12!83;UBERON:0004290!2.75e-12!70;UBERON:0000486!7.11e-10!82;UBERON:0003102!4.42e-09!95;UBERON:0002199!1.16e-08!45;UBERON:0002416!1.16e-08!45;UBERON:0002097!1.93e-08!40;UBERON:0001134!6.39e-08!61;UBERON:0002036!6.39e-08!61;UBERON:0003082!6.39e-08!61;UBERON:0002067!9.83e-08!9;UBERON:0004016!9.83e-08!9;UBERON:0010083!9.83e-08!9;UBERON:0002385!1.89e-07!63;UBERON:0001015!1.89e-07!63;UBERON:0000383!1.89e-07!63|ontology_enrichment_uberon_v019=UBERON:0002067;1.58e-11;9|ontology_enrichment_uberon_v019_2=UBERON:0002067,1.27e-11,9;UBERON:0004016,1.27e-11,9;UBERON:0010083,1.27e-11,9;UBERON:0002329,1.77e-07,71;UBERON:0003059,1.77e-07,71;UBERON:0007282,1.77e-07,71;UBERON:0004290,1.77e-07,71;UBERON:0009618,1.77e-07,71;UBERON:0003077,2.37e-07,72;UBERON:0007285,2.37e-07,72;UBERON:0007524,3.15e-07,73|phase1_expression=0.363356758541113,1.07050261945492,0.140954404095971,0,0,0,0,0,0.522371256399677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0.154934401160603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0.311211035399766,0.269421344139376,0.163461903113459,0,0,0.234321431833797,1.5608003841516,2.85235910772225,0.448346041655403,1.17434498643765,0.971237666208789,0.561803226808994,0,0.122834317311768,0.206651562351531,3.56400857184616,1.48360157567134,0,0,0.505008341862199,0.500474079487857,0,0.438977620880838,0,1.95309476578576,0.113432183160021,0,0.85422955527427,0.635795703478686,0,0.309157587715317,0.515281080091258,0.18611685633159,0,0.292311015483596,0,0.184099797284599,0,0.355009592516614,0.10075209822764,0,0,0,0,0.121973706129595,0,0.232387885739037,0,0,0,1.56449532329816,0,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,2.03193261734941,4.96584953225761,1.17217447210047,1.71072446022705,0.514137463516618,5.70651809903443,0,0,0,0.1466765716419,0.129271715757778,0,0,0.26593811658487,1.04007436911366,0,0,0,0.142977993658148,0,3.29296134712308,0.325736184293735,0,3.16780749173372,0,0,0,0,0,0,0,0,0,0.723906533337896,0.61642896765115,3.04403637507822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.902838299183157,0,0,0,0.368738337083406,2.34585759063824,0,0,0,0,0,0,0,0,0.744323423456331,0.767309866440312,0.841980283299221,0,1.02341449813341,0,0,0.154209693802656,0,0.164254312027618,0,0.116210378459959,0,0,0,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0.082509499920588,0,0,0,0.48335359146061,0.308097234229289,0.307007349452259,1.10269257987624,2.25582514223375,2.32026710262766,0.511359764496605,0.356128142586949,0,0,0,0,0.929691098594572,0.94443704049192,0,0,0,0,0,0,0,0.316379424718726,0.190630193923825,0,0,0,0,0.179872457583315,0.274537029736055,0.471249609382746,0,0,0,0,0.243713489631284,0,0.545999645631943,0.424216295861138,0,0,0,0,0,0.655894752046633,0,0.30982349809975,0,6.16668814477421,5.01070109166918,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,2.13648142254946,0,0,0,1.58696134274089,0,0,0,0,0,0,0,0,0,0,0.338583555603207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586032717087576,0.242721043499027,0,0,0,0,0,0,0,0.111308705022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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4311 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7154 | |||
|TSSclassifier=S | |||
|UniProt=P08473 | |||
|association_with_transcript=-122bp_to_ENST00000460393,ENST00000491597,NM_000902,uc003fab.1_5end | |||
|coexpression_cluster_id=C4297 | |||
|description=CAGE_peak_21_at_MME_5end | |||
|id=chr3:154797300..154797313,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.08e-25!180;CL:0000057!2.20e-15!75;CL:0002620!3.00e-11!23;CL:0002551!4.32e-09!6;CL:0000188!4.52e-09!9;CL:0000680!3.42e-08!57;CL:0000056!3.42e-08!57;CL:0000355!3.42e-08!57;CL:0000148!9.34e-07!10;CL:0000541!9.34e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0002567;5.34e-20;3!CL:0000148;2.79e-16;10!CL:0002588;7.86e-15;2!CL:0000147;1.42e-11;14!CL:0002551;3.66e-10;6!CL:0000594;9.29e-10;3!CL:0000680;4.17e-09;7!CL:0000710;4.92e-08;20!CL:0002574;6.10e-08;1!CL:0002566;6.10e-08;1!CL:0000817;1.26e-07;1!CL:0000188;5.00e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002567,4.12e-20,3;CL:0000148,2.71e-16,10;CL:0000541,2.71e-16,10;CL:0002588,8.43e-15,2;CL:0000147,1.39e-11,14;CL:0002551,3.12e-10,6;CL:0000594,9.72e-10,3;CL:0000710,4.85e-08,20;CL:0002574,5.70e-08,1;CL:0002566,7.45e-08,1;CL:0000188,5.44e-07,9 | |||
|ontology_enrichment_development_v019=UBERON:0000358;6.10e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!2.32e-12!83;UBERON:0002329!2.32e-12!83;UBERON:0003077!2.32e-12!83;UBERON:0003059!2.32e-12!83;UBERON:0007282!2.32e-12!83;UBERON:0009618!2.32e-12!83;UBERON:0007285!2.32e-12!83;UBERON:0004290!2.75e-12!70;UBERON:0000486!7.11e-10!82;UBERON:0003102!4.42e-09!95;UBERON:0002199!1.16e-08!45;UBERON:0002416!1.16e-08!45;UBERON:0002097!1.93e-08!40;UBERON:0001134!6.39e-08!61;UBERON:0002036!6.39e-08!61;UBERON:0003082!6.39e-08!61;UBERON:0002067!9.83e-08!9;UBERON:0004016!9.83e-08!9;UBERON:0010083!9.83e-08!9;UBERON:0002385!1.89e-07!63;UBERON:0001015!1.89e-07!63;UBERON:0000383!1.89e-07!63 | |||
|ontology_enrichment_uberon_v019=UBERON:0002067;1.58e-11;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002067,1.27e-11,9;UBERON:0004016,1.27e-11,9;UBERON:0010083,1.27e-11,9;UBERON:0002329,1.77e-07,71;UBERON:0003059,1.77e-07,71;UBERON:0007282,1.77e-07,71;UBERON:0004290,1.77e-07,71;UBERON:0009618,1.77e-07,71;UBERON:0003077,2.37e-07,72;UBERON:0007285,2.37e-07,72;UBERON:0007524,3.15e-07,73 | |||
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|short_description=p21@MME | |||
}} |
Revision as of 22:16, 12 September 2013
Short description: | p21@MME |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_21_at_MME_5end |
Coexpression cluster: | C4297_Smooth_tridermal_Melanocyte_Mesenchymal_Fibroblast_Skeletal_Wilms |
Association with transcript: | -122bp_to_ENST00000460393, ENST00000491597, NM_000902, uc003fab.1_5end |
EntrezGene: | MME |
HGNC: | 7154 |
UniProt: | P08473 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
light melanocyte | 4.12e-20 | 3 |
melanocyte | 2.71e-16 | 10 |
melanoblast | 2.71e-16 | 10 |
smooth muscle cell of the umbilical vein | 8.43e-15 | 2 |
pigment cell | 1.39e-11 | 14 |
fibroblast of dermis | 3.12e-10 | 6 |
skeletal muscle satellite cell | 9.72e-10 | 3 |
neurecto-epithelial cell | 4.85e-08 | 20 |
stromal cell of pancreas | 5.70e-08 | 1 |
dark melanocyte | 7.45e-08 | 1 |
cell of skeletal muscle | 5.44e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
dermis | 1.27e-11 | 9 |
dermatome | 1.27e-11 | 9 |
future dermis | 1.27e-11 | 9 |
somite | 1.77e-07 | 71 |
presomitic mesoderm | 1.77e-07 | 71 |
presumptive segmental plate | 1.77e-07 | 71 |
dermomyotome | 1.77e-07 | 71 |
trunk paraxial mesoderm | 1.77e-07 | 71 |
paraxial mesoderm | 2.37e-07 | 72 |
presumptive paraxial mesoderm | 2.37e-07 | 72 |
dense mesenchyme tissue | 3.15e-07 | 73 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.