FFCP PHASE1:Hg19::chr3:126243032..126243049,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=166012|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=21755|TSSclassifier=S|UniProt=Q8NET6|association_with_transcript=-76bp_to_ENST00000319340_5end|coexpression_cluster_id=C55|description=CAGE_peak_4_at_CHST13_5end|id=chr3:126243032..126243049,+|ontology_enrichment_celltype=CL:0000766!7.15e-24!76;CL:0000839!1.32e-23!70;CL:0000557!4.01e-23!71;CL:0002194!4.26e-22!63;CL:0000576!4.26e-22!63;CL:0000040!4.26e-22!63;CL:0000559!4.26e-22!63;CL:0002009!4.02e-21!65;CL:0000763!4.98e-17!112;CL:0000049!4.98e-17!112;CL:0002057!2.64e-13!42;CL:0000860!4.96e-12!45;CL:0002031!9.97e-10!124;CL:0000738!1.32e-09!140;CL:0000988!3.31e-09!182;CL:0000037!3.86e-09!172;CL:0000566!3.86e-09!172;CL:0002087!6.41e-09!119;CL:0002032!1.31e-08!165;CL:0000837!1.31e-08!165;CL:0000235!9.03e-07!10|ontology_enrichment_celltype_v019=CL:0000182;2.22e-13;12!CL:0000037;1.27e-10;1!CL:0001024;1.27e-10;1!CL:0002563;2.31e-10;4!CL:0000235;2.23e-07;6|ontology_enrichment_celltype_v019_2=CL:0000182,2.19e-13,12;CL:0001024,1.61e-10,1;CL:0002563,1.86e-10,4;CL:0000223,1.67e-07,58;CL:0000235,2.30e-07,6|ontology_enrichment_development_v019=UBERON:0004161;6.28e-22;11!UBERON:0009497;1.51e-18;13!UBERON:0003104;8.28e-11;31!UBERON:0001041;5.79e-08;30|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!1.02e-24!102;UBERON:0003061!1.02e-24!102;UBERON:0002405!1.43e-23!115;UBERON:0002193!2.55e-21!112;UBERON:0002371!7.72e-21!80;UBERON:0001474!8.53e-20!86;UBERON:0004765!2.92e-15!101;UBERON:0001434!2.92e-15!101|ontology_enrichment_uberon_v019=UBERON:0002107;5.87e-18;19!UBERON:0006925;5.87e-18;19!UBERON:0002423;1.49e-13;25!UBERON:0001242;2.31e-10;4!UBERON:0001262;2.31e-10;4!UBERON:0004786;2.31e-10;4!UBERON:0004808;2.31e-10;4!UBERON:0001277;2.31e-10;4!UBERON:0002365;3.03e-10;31!UBERON:0002330;3.03e-10;31!UBERON:0002368;5.22e-09;33!UBERON:0000160;1.02e-08;17!UBERON:0005409;7.48e-07;22|ontology_enrichment_uberon_v019_2=UBERON:0002107,6.05e-18,19;UBERON:0006925,6.05e-18,19;UBERON:0008836,6.05e-18,19;UBERON:0008835,1.91e-15,22;UBERON:0003894,1.91e-15,22;UBERON:0009854,9.34e-15,23;UBERON:0007499,1.53e-13,25;UBERON:0009497,1.53e-13,25;UBERON:0000015,1.53e-13,25;UBERON:0002423,1.53e-13,25;UBERON:0006235,1.53e-13,25;UBERON:0004161,1.53e-13,25;UBERON:0003929,3.14e-13,54;UBERON:0009856,5.26e-13,26;UBERON:0002365,7.73e-11,31;UBERON:0002330,7.73e-11,31;UBERON:0001242,1.86e-10,4;UBERON:0001262,1.86e-10,4;UBERON:0004786,1.86e-10,4;UBERON:0004808,1.86e-10,4;UBERON:0001277,1.86e-10,4;UBERON:0002368,1.51e-09,35;UBERON:0000160,9.69e-09,17;UBERON:0005911,2.75e-08,82;UBERON:0004921,4.21e-08,118;UBERON:0002530,2.46e-07,59;UBERON:0000949,2.54e-07,45|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,1.17440175733939,0,0.401088894940283,0.434021741431704,1.79132379391939,0.32389366601898,0.77272670290256,0,0.755751887377619,0,0,0.411167888021826,0,0,0.256160706529101,0,0.344745680736619,0.645484683583826,0,0.188242339542605,0.272906150057846,0,0,0.320929027076094,0,0,0.598390972864896,0,0,0.56738522469114,0,0,0.521482918420201,0.217188844705117,0,0,0,0.211255286311942,0.212604299965044,0.419317291016752,0.22465726229299,0.600707571366025,0.16072558669708,0,0,0.365328307529268,0,0,0,0,0,0,0,0,0,0,0,2.64342657158052,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392937226493138,0,0,0,0.348259474598534,0.26591592103773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0.116193942869518,0.10366105501537,0,0.36497735907583,0,0,0,0,0,0.354920400119532,0,0,0.110293972732394,0.217879444092406,0,0,0,0,0,0,0,0,3.80265104465493,0.982827216677626,0,0,2.95172252503473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.984868024349589,0.468008530278475,0.445893486866185,0,0,0,0,0,0,0,0,0.621984346622316,0.288239906833923,0.88369703398466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43247561282381,0.502257091432126,4.21667878966063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.98836183652353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13345112812495,0.0915694648183434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41215701165169,0,0,0,0,0,0.764637207142375,0.569647187174163,0,0.822724546172388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.642352300414798,0.403599414382095,2.12923118845163,0,0,0,0.166849141711909,0.976940477010201,0,0,0,0,0,0,0,0.121360521749513,0,0,0,0,0,0,0,0,0,0,0,0,0.755798243562828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,1.55488378577335,0,0,0,3.05515072466813,0,0.247127877893006,0.208843899010911,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0.103688191397247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0.195551382734803,0,0,0.39961921916426,0.288180834308212,0,1.37275998289572,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.53276505917406,9.23057613869064,7.95361817479382,0.0984274815147488,0,0,0,0.160753148465019,0.275078873194468,0,0,0,0.0607495566580247,0,0.315222829196793,0.419636705079985,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63794020620548,1.32506888912221,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260994291965212,0,0,0,0,0.308801447160972,0,0,0,0,0,0.345430341731199,0,0,0,0,0,0,0,0,0,0.106691729694141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.913158720509496,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243835849964539,0,0,0,0,0,0.994753875806841,0,0,0,0,0.154348316215889,3.0598338470554,0,0,0,0,0,0,0,0.0939839179798536,0.193373663920732,0,0,0,0,0,0,0,0,0.0679914901909147,0,0.5290268405154,0,0,0,0,0.109265571963696,0.126698501011437,0.203977659483963,0,0,1.50424523575425,0.0757786982182394,0,0,0,0,0,0,0.124149428591716,0.112131862580613,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0|short_description=p4@CHST13}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=166012 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21755 | |||
|TSSclassifier=S | |||
|UniProt=Q8NET6 | |||
|association_with_transcript=-76bp_to_ENST00000319340_5end | |||
|coexpression_cluster_id=C55 | |||
|description=CAGE_peak_4_at_CHST13_5end | |||
|id=chr3:126243032..126243049,+ | |||
|ontology_enrichment_celltype=CL:0000766!7.15e-24!76;CL:0000839!1.32e-23!70;CL:0000557!4.01e-23!71;CL:0002194!4.26e-22!63;CL:0000576!4.26e-22!63;CL:0000040!4.26e-22!63;CL:0000559!4.26e-22!63;CL:0002009!4.02e-21!65;CL:0000763!4.98e-17!112;CL:0000049!4.98e-17!112;CL:0002057!2.64e-13!42;CL:0000860!4.96e-12!45;CL:0002031!9.97e-10!124;CL:0000738!1.32e-09!140;CL:0000988!3.31e-09!182;CL:0000037!3.86e-09!172;CL:0000566!3.86e-09!172;CL:0002087!6.41e-09!119;CL:0002032!1.31e-08!165;CL:0000837!1.31e-08!165;CL:0000235!9.03e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0000182;2.22e-13;12!CL:0000037;1.27e-10;1!CL:0001024;1.27e-10;1!CL:0002563;2.31e-10;4!CL:0000235;2.23e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,2.19e-13,12;CL:0001024,1.61e-10,1;CL:0002563,1.86e-10,4;CL:0000223,1.67e-07,58;CL:0000235,2.30e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0004161;6.28e-22;11!UBERON:0009497;1.51e-18;13!UBERON:0003104;8.28e-11;31!UBERON:0001041;5.79e-08;30 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.02e-24!102;UBERON:0003061!1.02e-24!102;UBERON:0002405!1.43e-23!115;UBERON:0002193!2.55e-21!112;UBERON:0002371!7.72e-21!80;UBERON:0001474!8.53e-20!86;UBERON:0004765!2.92e-15!101;UBERON:0001434!2.92e-15!101 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;5.87e-18;19!UBERON:0006925;5.87e-18;19!UBERON:0002423;1.49e-13;25!UBERON:0001242;2.31e-10;4!UBERON:0001262;2.31e-10;4!UBERON:0004786;2.31e-10;4!UBERON:0004808;2.31e-10;4!UBERON:0001277;2.31e-10;4!UBERON:0002365;3.03e-10;31!UBERON:0002330;3.03e-10;31!UBERON:0002368;5.22e-09;33!UBERON:0000160;1.02e-08;17!UBERON:0005409;7.48e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,6.05e-18,19;UBERON:0006925,6.05e-18,19;UBERON:0008836,6.05e-18,19;UBERON:0008835,1.91e-15,22;UBERON:0003894,1.91e-15,22;UBERON:0009854,9.34e-15,23;UBERON:0007499,1.53e-13,25;UBERON:0009497,1.53e-13,25;UBERON:0000015,1.53e-13,25;UBERON:0002423,1.53e-13,25;UBERON:0006235,1.53e-13,25;UBERON:0004161,1.53e-13,25;UBERON:0003929,3.14e-13,54;UBERON:0009856,5.26e-13,26;UBERON:0002365,7.73e-11,31;UBERON:0002330,7.73e-11,31;UBERON:0001242,1.86e-10,4;UBERON:0001262,1.86e-10,4;UBERON:0004786,1.86e-10,4;UBERON:0004808,1.86e-10,4;UBERON:0001277,1.86e-10,4;UBERON:0002368,1.51e-09,35;UBERON:0000160,9.69e-09,17;UBERON:0005911,2.75e-08,82;UBERON:0004921,4.21e-08,118;UBERON:0002530,2.46e-07,59;UBERON:0000949,2.54e-07,45 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,1.17440175733939,0,0.401088894940283,0.434021741431704,1.79132379391939,0.32389366601898,0.77272670290256,0,0.755751887377619,0,0,0.411167888021826,0,0,0.256160706529101,0,0.344745680736619,0.645484683583826,0,0.188242339542605,0.272906150057846,0,0,0.320929027076094,0,0,0.598390972864896,0,0,0.56738522469114,0,0,0.521482918420201,0.217188844705117,0,0,0,0.211255286311942,0.212604299965044,0.419317291016752,0.22465726229299,0.600707571366025,0.16072558669708,0,0,0.365328307529268,0,0,0,0,0,0,0,0,0,0,0,2.64342657158052,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392937226493138,0,0,0,0.348259474598534,0.26591592103773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0.116193942869518,0.10366105501537,0,0.36497735907583,0,0,0,0,0,0.354920400119532,0,0,0.110293972732394,0.217879444092406,0,0,0,0,0,0,0,0,3.80265104465493,0.982827216677626,0,0,2.95172252503473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.984868024349589,0.468008530278475,0.445893486866185,0,0,0,0,0,0,0,0,0.621984346622316,0.288239906833923,0.88369703398466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43247561282381,0.502257091432126,4.21667878966063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.98836183652353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13345112812495,0.0915694648183434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41215701165169,0,0,0,0,0,0.764637207142375,0.569647187174163,0,0.822724546172388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.642352300414798,0.403599414382095,2.12923118845163,0,0,0,0.166849141711909,0.976940477010201,0,0,0,0,0,0,0,0.121360521749513,0,0,0,0,0,0,0,0,0,0,0,0,0.755798243562828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,1.55488378577335,0,0,0,3.05515072466813,0,0.247127877893006,0.208843899010911,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0.103688191397247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0.195551382734803,0,0,0.39961921916426,0.288180834308212,0,1.37275998289572,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.53276505917406,9.23057613869064,7.95361817479382,0.0984274815147488,0,0,0,0.160753148465019,0.275078873194468,0,0,0,0.0607495566580247,0,0.315222829196793,0.419636705079985,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63794020620548,1.32506888912221,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260994291965212,0,0,0,0,0.308801447160972,0,0,0,0,0,0.345430341731199,0,0,0,0,0,0,0,0,0,0.106691729694141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.913158720509496,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243835849964539,0,0,0,0,0,0.994753875806841,0,0,0,0,0.154348316215889,3.0598338470554,0,0,0,0,0,0,0,0.0939839179798536,0.193373663920732,0,0,0,0,0,0,0,0,0.0679914901909147,0,0.5290268405154,0,0,0,0,0.109265571963696,0.126698501011437,0.203977659483963,0,0,1.50424523575425,0.0757786982182394,0,0,0,0,0,0,0.124149428591716,0.112131862580613,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p4@CHST13 | |||
}} |
Revision as of 21:19, 12 September 2013
Short description: | p4@CHST13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_CHST13_5end |
Coexpression cluster: | C55_hepatocellular_Intestinal_liver_Prostate_fibrosarcoma_Hepatocyte_hepatoblastoma |
Association with transcript: | -76bp_to_ENST00000319340_5end |
EntrezGene: | CHST13 |
HGNC: | 21755 |
UniProt: | Q8NET6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 2.19e-13 | 12 |
CD34-positive, CD38-negative hematopoietic stem cell | 1.61e-10 | 1 |
intestinal epithelial cell | 1.86e-10 | 4 |
endodermal cell | 1.67e-07 | 58 |
macrophage | 2.30e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
liver | 6.05e-18 | 19 |
digestive gland | 6.05e-18 | 19 |
liver bud | 6.05e-18 | 19 |
hepatic diverticulum | 1.91e-15 | 22 |
liver primordium | 1.91e-15 | 22 |
digestive tract diverticulum | 9.34e-15 | 23 |
epithelial sac | 1.53e-13 | 25 |
epithelium of foregut-midgut junction | 1.53e-13 | 25 |
anatomical boundary | 1.53e-13 | 25 |
hepatobiliary system | 1.53e-13 | 25 |
foregut-midgut junction | 1.53e-13 | 25 |
septum transversum | 1.53e-13 | 25 |
gut epithelium | 3.14e-13 | 54 |
sac | 5.26e-13 | 26 |
exocrine gland | 7.73e-11 | 31 |
exocrine system | 7.73e-11 | 31 |
intestinal mucosa | 1.86e-10 | 4 |
wall of intestine | 1.86e-10 | 4 |
gastrointestinal system mucosa | 1.86e-10 | 4 |
gastrointestinal system epithelium | 1.86e-10 | 4 |
intestinal epithelium | 1.86e-10 | 4 |
endocrine gland | 1.51e-09 | 35 |
intestine | 9.69e-09 | 17 |
endo-epithelium | 2.75e-08 | 82 |
subdivision of digestive tract | 4.21e-08 | 118 |
gland | 2.46e-07 | 59 |
endocrine system | 2.54e-07 | 45 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.