FFCP PHASE1:Mm9::chr11:74537807..74537831,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=18472|HGNC=|MCL_coexpression_id=240|UniProt=|association_with_transcript=0bp_to_ENSMUST00000156794_5end|description=CAGE_peak_2_at_Pafah1b1_5end|id=chr11:74537807..74537831,-|ontology_enrichment_celltype=CL:0000117!2.12e-07!23;CL:0000337!2.12e-07!23|ontology_enrichment_celltype_v019_2=CL:0000117,2.12e-07,23;CL:0000337,2.12e-07,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!6.78e-11!34;UBERON:0000073!1.09e-10!75;UBERON:0001016!1.09e-10!75;UBERON:0001049!2.56e-10!52;UBERON:0005068!2.56e-10!52;UBERON:0006241!2.56e-10!52;UBERON:0007135!2.56e-10!52;UBERON:0001017!3.36e-10!73;UBERON:0005743!3.36e-10!73;UBERON:0000955!1.22e-09!50;UBERON:0006238!1.22e-09!50;UBERON:0000033!2.22e-09!63;UBERON:0002616!3.12e-09!49;UBERON:0002791!1.27e-08!29;UBERON:0003528!1.27e-08!29;UBERON:0001893!1.27e-08!29;UBERON:0004121!5.89e-08!102;UBERON:0000924!5.89e-08!102;UBERON:0006601!5.89e-08!102;UBERON:0002346!1.12e-07!71;UBERON:0003075!1.12e-07!71;UBERON:0007284!1.12e-07!71;UBERON:0003080!1.13e-07!40;UBERON:0000025!2.01e-07!114;UBERON:0002021!2.05e-07!10;UBERON:0000411!2.05e-07!10;UBERON:0001950!2.05e-07!10;UBERON:0002780!2.39e-07!39;UBERON:0001890!2.39e-07!39;UBERON:0006240!2.39e-07!39;UBERON:0003056!2.40e-07!49;UBERON:0004111!9.59e-07!122|ontology_enrichment_uberon_v019_2=UBERON:0010314,1.77e-11,92;UBERON:0000073,2.21e-11,54;UBERON:0002020,6.78e-11,34;UBERON:0001016,1.09e-10,75;UBERON:0001049,2.56e-10,52;UBERON:0005068,2.56e-10,52;UBERON:0006241,2.56e-10,52;UBERON:0007135,2.56e-10,52;UBERON:0001017,3.36e-10,73;UBERON:0002346,1.22e-09,64;UBERON:0003075,1.22e-09,64;UBERON:0007284,1.22e-09,64;UBERON:0004121,1.66e-09,95;UBERON:0000924,1.66e-09,95;UBERON:0006601,1.66e-09,95;UBERON:0010371,3.84e-09,73;UBERON:0003528,1.27e-08,29;UBERON:0002791,1.27e-08,29;UBERON:0001893,1.27e-08,29;UBERON:0000955,3.29e-08,47;UBERON:0006238,3.29e-08,47;UBERON:0002616,8.02e-08,46;UBERON:0003080,1.13e-07,40;UBERON:0000025,2.01e-07,114;UBERON:0002021,2.05e-07,10;UBERON:0000411,2.05e-07,10;UBERON:0001950,2.05e-07,10;UBERON:0002780,2.39e-07,39;UBERON:0001890,2.39e-07,39;UBERON:0006240,2.39e-07,39;UBERON:0003056,2.40e-07,49;UBERON:0004111,9.59e-07,122|phase1_expression=17.9366708757369,56.1850406299371,50.959914811628,41.4375969490357,57.1021132138836,11.0800319461847,9.57811826441655,5.29405626110463,13.3749286044083,11.2350972634557,2.39705155515707,3.03134204182278,4.45121897821135,4.80812213304486,11.9919514253639,27.7391116324062,27.9824751251259,3.47008381894061,4.2505474417779,6.36584477697045,12.161190491603,5.26242041364692,4.70159620450084,14.5593104742,17.6645146421721,45.9385571292016,31.8763877157715,26.2874903876785,14.8218267175972,22.6827116783938,11.3082560434205,3.17515336729816,2.46025915033828,15.8481681015439,4.33277429626912,4.82080471539628,4.69589519403449,15.4856703372656,12.5013655123808,6.80580867165938,19.4116391050235,10.9287277593351,18.934903768215,10.1976422560218,11.3542162965856,12.114085642671,2.34717403304412,3.05235218932625,2.85592037554813,4.08302788055995,2.51975558925653,0,9.56360854529097,15.2326049822382,13.779845764841,9.26133969729409,12.0344044774278,12.3761302146586,15.578367486189,12.6957835025288,12.6766280701236,2.37191172448392,3.55717918444456,1.3498495759221,1.97773272513395,2.8419204597844,5.09320187881288,8.4528027170742,17.3161652555158,9.45041568321835,12.4091727197315,21.4238238302853,20.5407743085001,12.4940615199253,11.9806838772795,2.75765635983006,23.1243350098716,36.7739533685341,38.4016333140609,16.7495585417346,19.1209175129036,16.6692278578163,24.5681039121215,27.0126052815206,28.1148775909331,21.8025153250514,33.0302299453919,22.927131836512,15.4481434399695,13.754023939435,15.6526823898906,5.16254326188832,6.79971333707751,3.77792234146472,5.19821133958135,3.13618820968135,5.61777680527007,6.64678258054425,7.01422212427746,4.94675404314476,15.0702459161048,11.5493829672886,15.2883143823987,0,3.030874574157,6.08063677140237,3.53867111510348,12.2176751299394,3.10725460376606,6.08612770165782,8.84775166507293,4.56698217468212,5.99600292865752,8.44046787094686,8.70156432804216,8.16832843642891,9.64060374164058,4.62717942143717,12.3845477272982,11.0001457964238,16.5631138845295,12.6067565815158,3.72783522436244,14.6390398505774,34.5587066242201,14.5610521468897,7.30872259486114,7.19883277192089,5.59108999121485,16.926342252745,15.0975198930147,22.6177833803156,22.0756886644191,34.2658712822643,19.5320761885986,29.2034273521964,11.915205570487,8.8328949133166,3.79084137650512,5.05060454127538,8.58794923553845,10.1156925950728,9.90341713929421,12.2070902446929,13.8794458268709,14.6049641124729,14.8985742049969,8.79591460512653,4.74249584452253,7.37513712654495,5.98233822157426,6.35667624039967,9.17555922444473,9.4028084960985,12.5527103208846,8.55847347319521,6.31991868581911,2.31613116403244,4.54661599032948,10.3562886267751,8.91199027928165,11.704033994966,8.52281048106757,11.8058539048442,12.4956361438776,16.2773761325285,1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| ||
|EntrezGene=18472 | |||
|HGNC= | |||
|MCL_coexpression_id=240 | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000156794_5end | |||
|description=CAGE_peak_2_at_Pafah1b1_5end | |||
|id=chr11:74537807..74537831,- | |||
|ontology_enrichment_celltype=CL:0000117!2.12e-07!23;CL:0000337!2.12e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.12e-07,23;CL:0000337,2.12e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!6.78e-11!34;UBERON:0000073!1.09e-10!75;UBERON:0001016!1.09e-10!75;UBERON:0001049!2.56e-10!52;UBERON:0005068!2.56e-10!52;UBERON:0006241!2.56e-10!52;UBERON:0007135!2.56e-10!52;UBERON:0001017!3.36e-10!73;UBERON:0005743!3.36e-10!73;UBERON:0000955!1.22e-09!50;UBERON:0006238!1.22e-09!50;UBERON:0000033!2.22e-09!63;UBERON:0002616!3.12e-09!49;UBERON:0002791!1.27e-08!29;UBERON:0003528!1.27e-08!29;UBERON:0001893!1.27e-08!29;UBERON:0004121!5.89e-08!102;UBERON:0000924!5.89e-08!102;UBERON:0006601!5.89e-08!102;UBERON:0002346!1.12e-07!71;UBERON:0003075!1.12e-07!71;UBERON:0007284!1.12e-07!71;UBERON:0003080!1.13e-07!40;UBERON:0000025!2.01e-07!114;UBERON:0002021!2.05e-07!10;UBERON:0000411!2.05e-07!10;UBERON:0001950!2.05e-07!10;UBERON:0002780!2.39e-07!39;UBERON:0001890!2.39e-07!39;UBERON:0006240!2.39e-07!39;UBERON:0003056!2.40e-07!49;UBERON:0004111!9.59e-07!122 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,1.77e-11,92;UBERON:0000073,2.21e-11,54;UBERON:0002020,6.78e-11,34;UBERON:0001016,1.09e-10,75;UBERON:0001049,2.56e-10,52;UBERON:0005068,2.56e-10,52;UBERON:0006241,2.56e-10,52;UBERON:0007135,2.56e-10,52;UBERON:0001017,3.36e-10,73;UBERON:0002346,1.22e-09,64;UBERON:0003075,1.22e-09,64;UBERON:0007284,1.22e-09,64;UBERON:0004121,1.66e-09,95;UBERON:0000924,1.66e-09,95;UBERON:0006601,1.66e-09,95;UBERON:0010371,3.84e-09,73;UBERON:0003528,1.27e-08,29;UBERON:0002791,1.27e-08,29;UBERON:0001893,1.27e-08,29;UBERON:0000955,3.29e-08,47;UBERON:0006238,3.29e-08,47;UBERON:0002616,8.02e-08,46;UBERON:0003080,1.13e-07,40;UBERON:0000025,2.01e-07,114;UBERON:0002021,2.05e-07,10;UBERON:0000411,2.05e-07,10;UBERON:0001950,2.05e-07,10;UBERON:0002780,2.39e-07,39;UBERON:0001890,2.39e-07,39;UBERON:0006240,2.39e-07,39;UBERON:0003056,2.40e-07,49;UBERON:0004111,9.59e-07,122 | |||
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| |||
|short_description=p2@Pafah1b1 | |||
}} |
Revision as of 20:51, 12 September 2013
Short description: | p2@Pafah1b1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Pafah1b1_5end |
Coexpression cluster: | MCL_coexpression_mm9:240 |
Association with transcript: | 0bp_to_ENSMUST00000156794_5end |
EntrezGene: | Pafah1b1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.12e-07 | 23 |
neuroblast (sensu Vertebrata) | 2.12e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 1.77e-11 | 92 |
regional part of nervous system | 2.21e-11 | 54 |
gray matter | 6.78e-11 | 34 |
nervous system | 1.09e-10 | 75 |
neural tube | 2.56e-10 | 52 |
neural rod | 2.56e-10 | 52 |
future spinal cord | 2.56e-10 | 52 |
neural keel | 2.56e-10 | 52 |
central nervous system | 3.36e-10 | 73 |
neurectoderm | 1.22e-09 | 64 |
neural plate | 1.22e-09 | 64 |
presumptive neural plate | 1.22e-09 | 64 |
ectoderm-derived structure | 1.66e-09 | 95 |
ectoderm | 1.66e-09 | 95 |
presumptive ectoderm | 1.66e-09 | 95 |
ecto-epithelium | 3.84e-09 | 73 |
brain grey matter | 1.27e-08 | 29 |
regional part of telencephalon | 1.27e-08 | 29 |
telencephalon | 1.27e-08 | 29 |
brain | 3.29e-08 | 47 |
future brain | 3.29e-08 | 47 |
regional part of brain | 8.02e-08 | 46 |
anterior neural tube | 1.13e-07 | 40 |
tube | 2.01e-07 | 114 |
occipital lobe | 2.05e-07 | 10 |
visual cortex | 2.05e-07 | 10 |
neocortex | 2.05e-07 | 10 |
regional part of forebrain | 2.39e-07 | 39 |
forebrain | 2.39e-07 | 39 |
future forebrain | 2.39e-07 | 39 |
pre-chordal neural plate | 2.40e-07 | 49 |
anatomical conduit | 9.59e-07 | 122 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.