FFCP PHASE1:Hg19::chr2:66662510..66662521,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4211|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=7000|TSSclassifier=S|UniProt=O00470,F8W8U3|association_with_transcript=-10bp_to_ENST00000272369,ENST00000407092,NM_002398,uc002sdt.2,uc002sdu.2_5end|coexpression_cluster_id=C1912|description=CAGE_peak_6_at_MEIS1_5end|id=chr2:66662510..66662521,+|ontology_enrichment_celltype=CL:0000192!1.52e-14!42;CL:0000514!1.52e-14!42;CL:0000680!2.93e-12!57;CL:0000056!2.93e-12!57;CL:0000355!2.93e-12!57;CL:0000187!9.89e-12!54;CL:0000183!2.83e-11!59;CL:0000393!3.72e-11!60;CL:0000211!3.72e-11!60;CL:0000359!1.53e-09!32;CL:0000055!9.68e-08!180|ontology_enrichment_celltype_v019=CL:0000192;6.83e-11;43!CL:0000359;5.47e-10;32!CL:0000333;4.09e-08;5!CL:0002539;1.33e-07;10|ontology_enrichment_celltype_v019_2=CL:0000192,1.12e-14,43;CL:0000514,1.12e-14,43;CL:0000187,8.58e-11,55;CL:0000359,1.16e-10,32;CL:0000680,7.45e-10,58;CL:0000056,7.45e-10,58;CL:0000355,7.45e-10,58;CL:0000393,5.12e-09,61;CL:0000211,5.12e-09,61;CL:0002539,1.13e-07,10|ontology_enrichment_development_v019=CL:0000514;6.83e-11;43|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:171;1.06e-08;10|ontology_enrichment_disease_v019_2=DOID:171,1.40e-08,10|ontology_enrichment_uberon=UBERON:0002385!7.76e-12!63;UBERON:0001015!7.76e-12!63;UBERON:0000383!7.76e-12!63;UBERON:0001134!3.52e-11!61;UBERON:0002036!3.52e-11!61;UBERON:0003082!3.52e-11!61;UBERON:0000468!6.31e-11!659;UBERON:0000481!6.46e-11!347;UBERON:0004290!6.99e-11!70;UBERON:0000475!1.11e-10!365;UBERON:0000486!7.28e-10!82;UBERON:0000914!6.79e-09!83;UBERON:0002329!6.79e-09!83;UBERON:0003077!6.79e-09!83;UBERON:0003059!6.79e-09!83;UBERON:0007282!6.79e-09!83;UBERON:0009618!6.79e-09!83;UBERON:0007285!6.79e-09!83;UBERON:0002100!1.27e-08!216;UBERON:0004872!3.15e-08!84;UBERON:0001637!4.51e-08!42;UBERON:0003509!4.51e-08!42;UBERON:0004572!4.51e-08!42;UBERON:0003104!4.61e-08!238;UBERON:0009142!4.61e-08!238;UBERON:0004573!5.50e-08!33;UBERON:0004571!5.50e-08!33;UBERON:0001135!8.91e-08!15;UBERON:0000922!1.70e-07!612;UBERON:0000467!1.95e-07!625;UBERON:0000480!2.55e-07!626;UBERON:0005256!3.00e-07!143;UBERON:0005156!4.20e-07!59;UBERON:0000990!4.20e-07!59;UBERON:0002050!9.61e-07!605;UBERON:0005423!9.61e-07!605|ontology_enrichment_uberon_v019=UBERON:0004573;4.36e-11;33!UBERON:0004571;4.36e-11;33!UBERON:0001135;8.31e-09;15!UBERON:0000013;4.09e-08;5!UBERON:0002410;4.09e-08;5!UBERON:0004237;1.33e-07;10!UBERON:0004695;1.33e-07;10!UBERON:0002111;1.33e-07;10!UBERON:0004178;1.33e-07;10|ontology_enrichment_uberon_v019_2=UBERON:0004573,6.08e-12,33;UBERON:0004571,6.08e-12,33;UBERON:0002385,3.99e-09,64;UBERON:0001015,3.99e-09,64;UBERON:0000383,3.99e-09,64;UBERON:0001637,4.14e-09,42;UBERON:0003509,4.14e-09,42;UBERON:0004572,4.14e-09,42;UBERON:0001135,4.73e-09,15;UBERON:0001134,9.30e-09,62;UBERON:0002036,9.30e-09,62;UBERON:0003082,9.30e-09,62;UBERON:0005256,1.44e-08,122;UBERON:0002329,2.60e-08,71;UBERON:0003059,2.60e-08,71;UBERON:0007282,2.60e-08,71;UBERON:0004290,2.60e-08,71;UBERON:0009618,2.60e-08,71;UBERON:0003077,4.29e-08,72;UBERON:0007285,4.29e-08,72;UBERON:0000013,4.48e-08,5;UBERON:0002410,4.48e-08,5;UBERON:0002100,5.71e-08,199;UBERON:0007524,6.97e-08,73;UBERON:0004237,1.13e-07,10;UBERON:0004695,1.13e-07,10;UBERON:0002111,1.13e-07,10;UBERON:0004178,1.13e-07,10;UBERON:0007503,6.37e-07,78;UBERON:0005156,6.99e-07,59;UBERON:0000990,6.99e-07,59;UBERON:0003104,9.37e-07,160;UBERON:0009142,9.37e-07,160|phase1_expression=0.726713517082227,0.856402095563933,1.9733616573436,2.00146596706261,1.78784437770915,0.872338524100369,0,0.631719873426831,0,0.491467873003018,0,0,0.527533956456907,0.618831764800233,0,2.01697543935533,1.20538905604795,2.92124036154949,1.46379839637152,0.492484232307152,0.204000691244253,0.940364164434263,0,0.136874425072884,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,1.46800219667424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.68152568894461,1.05353633910031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0.255725123687061,0,0,0.434539556882471,0,0.486634870302636,2.07976597760949,1.77383517970051,2.10803485663503,1.5062593682237,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,0.886413581652058,4.63432132846266,3.44203944898576,1.77334191099179,0.560677600142307,0,0.49333509683432,0.311211035399766,0.538842688278752,0.490385709340376,0,0,0,0,0,0.448346041655403,0.23486899728753,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226864366320042,0.538168907066586,0,0.211931901159562,0.900273288253207,0.103052529238439,1.03056216018252,0,3.54430297706659,0.584622030967192,0.504867548488229,0.0920498986422993,0,3.19508633264953,0.906768884048762,1.18692414617341,0,0.272746120590835,0.573609190778008,0,0,0.116193942869518,0.310983165046111,0.252320850875628,0,0,1.28648187638577,4.14404764057442,0,0,0.118306800039844,0,0.24101102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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4211 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7000 | |||
|TSSclassifier=S | |||
|UniProt=O00470,F8W8U3 | |||
|association_with_transcript=-10bp_to_ENST00000272369,ENST00000407092,NM_002398,uc002sdt.2,uc002sdu.2_5end | |||
|coexpression_cluster_id=C1912 | |||
|description=CAGE_peak_6_at_MEIS1_5end | |||
|id=chr2:66662510..66662521,+ | |||
|ontology_enrichment_celltype=CL:0000192!1.52e-14!42;CL:0000514!1.52e-14!42;CL:0000680!2.93e-12!57;CL:0000056!2.93e-12!57;CL:0000355!2.93e-12!57;CL:0000187!9.89e-12!54;CL:0000183!2.83e-11!59;CL:0000393!3.72e-11!60;CL:0000211!3.72e-11!60;CL:0000359!1.53e-09!32;CL:0000055!9.68e-08!180 | |||
|ontology_enrichment_celltype_v019=CL:0000192;6.83e-11;43!CL:0000359;5.47e-10;32!CL:0000333;4.09e-08;5!CL:0002539;1.33e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000192,1.12e-14,43;CL:0000514,1.12e-14,43;CL:0000187,8.58e-11,55;CL:0000359,1.16e-10,32;CL:0000680,7.45e-10,58;CL:0000056,7.45e-10,58;CL:0000355,7.45e-10,58;CL:0000393,5.12e-09,61;CL:0000211,5.12e-09,61;CL:0002539,1.13e-07,10 | |||
|ontology_enrichment_development_v019=CL:0000514;6.83e-11;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:171;1.06e-08;10 | |||
|ontology_enrichment_disease_v019_2=DOID:171,1.40e-08,10 | |||
|ontology_enrichment_uberon=UBERON:0002385!7.76e-12!63;UBERON:0001015!7.76e-12!63;UBERON:0000383!7.76e-12!63;UBERON:0001134!3.52e-11!61;UBERON:0002036!3.52e-11!61;UBERON:0003082!3.52e-11!61;UBERON:0000468!6.31e-11!659;UBERON:0000481!6.46e-11!347;UBERON:0004290!6.99e-11!70;UBERON:0000475!1.11e-10!365;UBERON:0000486!7.28e-10!82;UBERON:0000914!6.79e-09!83;UBERON:0002329!6.79e-09!83;UBERON:0003077!6.79e-09!83;UBERON:0003059!6.79e-09!83;UBERON:0007282!6.79e-09!83;UBERON:0009618!6.79e-09!83;UBERON:0007285!6.79e-09!83;UBERON:0002100!1.27e-08!216;UBERON:0004872!3.15e-08!84;UBERON:0001637!4.51e-08!42;UBERON:0003509!4.51e-08!42;UBERON:0004572!4.51e-08!42;UBERON:0003104!4.61e-08!238;UBERON:0009142!4.61e-08!238;UBERON:0004573!5.50e-08!33;UBERON:0004571!5.50e-08!33;UBERON:0001135!8.91e-08!15;UBERON:0000922!1.70e-07!612;UBERON:0000467!1.95e-07!625;UBERON:0000480!2.55e-07!626;UBERON:0005256!3.00e-07!143;UBERON:0005156!4.20e-07!59;UBERON:0000990!4.20e-07!59;UBERON:0002050!9.61e-07!605;UBERON:0005423!9.61e-07!605 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;4.36e-11;33!UBERON:0004571;4.36e-11;33!UBERON:0001135;8.31e-09;15!UBERON:0000013;4.09e-08;5!UBERON:0002410;4.09e-08;5!UBERON:0004237;1.33e-07;10!UBERON:0004695;1.33e-07;10!UBERON:0002111;1.33e-07;10!UBERON:0004178;1.33e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004573,6.08e-12,33;UBERON:0004571,6.08e-12,33;UBERON:0002385,3.99e-09,64;UBERON:0001015,3.99e-09,64;UBERON:0000383,3.99e-09,64;UBERON:0001637,4.14e-09,42;UBERON:0003509,4.14e-09,42;UBERON:0004572,4.14e-09,42;UBERON:0001135,4.73e-09,15;UBERON:0001134,9.30e-09,62;UBERON:0002036,9.30e-09,62;UBERON:0003082,9.30e-09,62;UBERON:0005256,1.44e-08,122;UBERON:0002329,2.60e-08,71;UBERON:0003059,2.60e-08,71;UBERON:0007282,2.60e-08,71;UBERON:0004290,2.60e-08,71;UBERON:0009618,2.60e-08,71;UBERON:0003077,4.29e-08,72;UBERON:0007285,4.29e-08,72;UBERON:0000013,4.48e-08,5;UBERON:0002410,4.48e-08,5;UBERON:0002100,5.71e-08,199;UBERON:0007524,6.97e-08,73;UBERON:0004237,1.13e-07,10;UBERON:0004695,1.13e-07,10;UBERON:0002111,1.13e-07,10;UBERON:0004178,1.13e-07,10;UBERON:0007503,6.37e-07,78;UBERON:0005156,6.99e-07,59;UBERON:0000990,6.99e-07,59;UBERON:0003104,9.37e-07,160;UBERON:0009142,9.37e-07,160 | |||
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| |||
|short_description=p6@MEIS1 | |||
}} |
Revision as of 19:22, 12 September 2013
Short description: | p6@MEIS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_MEIS1_5end |
Coexpression cluster: | C1912_uterus_cervix_rectum_cerebellum_neuroepithelioma_sacrococcigeal_neuroectodermal |
Association with transcript: | -10bp_to_ENST00000272369, ENST00000407092, NM_002398, uc002sdt.2, uc002sdu.2_5end |
EntrezGene: | MEIS1 |
HGNC: | 7000 |
UniProt: | O00470F8W8U3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 1.12e-14 | 43 |
smooth muscle myoblast | 1.12e-14 | 43 |
muscle cell | 8.58e-11 | 55 |
vascular associated smooth muscle cell | 1.16e-10 | 32 |
muscle precursor cell | 7.45e-10 | 58 |
myoblast | 7.45e-10 | 58 |
multi-potent skeletal muscle stem cell | 7.45e-10 | 58 |
electrically responsive cell | 5.12e-09 | 61 |
electrically active cell | 5.12e-09 | 61 |
aortic smooth muscle cell | 1.13e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
systemic artery | 6.08e-12 | 33 |
systemic arterial system | 6.08e-12 | 33 |
muscle tissue | 3.99e-09 | 64 |
musculature | 3.99e-09 | 64 |
musculature of body | 3.99e-09 | 64 |
artery | 4.14e-09 | 42 |
arterial blood vessel | 4.14e-09 | 42 |
arterial system | 4.14e-09 | 42 |
smooth muscle tissue | 4.73e-09 | 15 |
skeletal muscle tissue | 9.30e-09 | 62 |
striated muscle tissue | 9.30e-09 | 62 |
myotome | 9.30e-09 | 62 |
trunk mesenchyme | 1.44e-08 | 122 |
somite | 2.60e-08 | 71 |
presomitic mesoderm | 2.60e-08 | 71 |
presumptive segmental plate | 2.60e-08 | 71 |
dermomyotome | 2.60e-08 | 71 |
trunk paraxial mesoderm | 2.60e-08 | 71 |
paraxial mesoderm | 4.29e-08 | 72 |
presumptive paraxial mesoderm | 4.29e-08 | 72 |
sympathetic nervous system | 4.48e-08 | 5 |
autonomic nervous system | 4.48e-08 | 5 |
trunk | 5.71e-08 | 199 |
dense mesenchyme tissue | 6.97e-08 | 73 |
blood vessel smooth muscle | 1.13e-07 | 10 |
arterial system smooth muscle | 1.13e-07 | 10 |
artery smooth muscle tissue | 1.13e-07 | 10 |
aorta smooth muscle tissue | 1.13e-07 | 10 |
epithelial vesicle | 6.37e-07 | 78 |
reproductive structure | 6.99e-07 | 59 |
reproductive system | 6.99e-07 | 59 |
mesenchyme | 9.37e-07 | 160 |
entire embryonic mesenchyme | 9.37e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 1.40e-08 | 10 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.