FFCP PHASE1:Hg19::chr2:42104692..42104706,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=388942|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA|HGNC=|TSSclassifier=N|UniProt=|association_with_transcript=0bp_to_ENST00000398796,ENST00000442214,NR_033996,uc002rse.2,uc010fao.1_5end|coexpression_cluster_id=C15|description=CAGE_peak_1_at_LOC388942_5end|id=chr2:42104692..42104706,+|ontology_enrichment_celltype=CL:0002150!1.56e-28!3;CL:0000861!1.56e-28!3;CL:0002541!5.47e-13!3;CL:0000167!8.95e-11!1;CL:0000164!8.95e-11!1;CL:0000502!8.95e-11!1;CL:0000172!8.95e-11!1;CL:0000173!8.95e-11!1;CL:0002351!8.95e-11!1;CL:0000235!5.83e-09!10|ontology_enrichment_celltype_v019=CL:0000167;1.67e-23;1!CL:0000164;1.67e-23;1!CL:0000502;1.67e-23;1!CL:0000172;1.67e-23;1!CL:0000173;1.67e-23;1|ontology_enrichment_celltype_v019_2=CL:0000167,2.10e-23,1;CL:0000164,2.10e-23,1;CL:0000502,2.10e-23,1;CL:0000172,2.10e-23,1;CL:0000173,2.10e-23,1;CL:0002351,2.10e-23,1|ontology_enrichment_development_v019=CL:0002351;1.67e-23;1!UBERON:0006298;4.59e-23;1|ontology_enrichment_disease=DOID:4430!8.95e-11!1|ontology_enrichment_disease_v019=DOID:4430;1.67e-23;1|ontology_enrichment_disease_v019_2=DOID:4430,2.10e-23,1;DOID:0050687,2.10e-07,143|ontology_enrichment_uberon=UBERON:0000476!5.47e-13!3;UBERON:0000920!5.47e-13!3;UBERON:0003124!3.82e-12!7;UBERON:0001736!1.30e-10!1;UBERON:0006298!1.30e-10!1;UBERON:0006834!3.96e-10!1;UBERON:0007023!9.65e-08!115;UBERON:0001044!3.66e-07!6;UBERON:0003293!3.66e-07!6;UBERON:0003294!3.66e-07!6;UBERON:0010047!3.66e-07!6;UBERON:0000167!3.66e-07!6;UBERON:0000995!5.79e-07!21;UBERON:0000002!7.75e-07!6;UBERON:0001560!7.75e-07!6|ontology_enrichment_uberon_v019=UBERON:0001736;4.59e-23;1!UBERON:0001044;1.17e-15;6!UBERON:0003293;1.17e-15;6!UBERON:0003294;1.17e-15;6!UBERON:0010047;1.17e-15;6!UBERON:0003408;1.17e-15;6!UBERON:0000167;1.17e-15;6!UBERON:0001829;3.06e-12;2!UBERON:0001041;2.99e-07;14|ontology_enrichment_uberon_v019_2=UBERON:0001736,5.13e-23,1;UBERON:0006298,5.13e-23,1;UBERON:0001044,1.13e-15,6;UBERON:0003293,1.13e-15,6;UBERON:0003294,1.13e-15,6;UBERON:0010047,1.13e-15,6;UBERON:0000167,1.13e-15,6;UBERON:0001829,3.24e-12,2;UBERON:0003408,8.46e-10,10|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.36852972734796,0,0,0,0,0,0,0,0,0,0,0,61.0152429489901,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153900517007594,0,0,0,0,0.31900115973192,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.6124209448053,1.97341156132701,1.72442459811739,0,0,0,0,0,0,0,0,0.85381197895741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606965604236632,0,0.266107110487916,0,0,0,0,0,0,0.39246546425257,0,0,0,0,0,0,0,1.16241425368125,0,0,0,0,0,3.44181887056222,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233939463462106,0,0,0,0,0,0,0,0,0,3.06379511232114,0,0,0,0,0,0,0,0,0,0,0,1.37618785021362,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573777643141411,0,0,0,0,0,0,0.122241444182866,0,0,0,0|short_description=p1@LOC388942}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=388942 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000398796,ENST00000442214,NR_033996,uc002rse.2,uc010fao.1_5end | |||
|coexpression_cluster_id=C15 | |||
|description=CAGE_peak_1_at_LOC388942_5end | |||
|id=chr2:42104692..42104706,+ | |||
|ontology_enrichment_celltype=CL:0002150!1.56e-28!3;CL:0000861!1.56e-28!3;CL:0002541!5.47e-13!3;CL:0000167!8.95e-11!1;CL:0000164!8.95e-11!1;CL:0000502!8.95e-11!1;CL:0000172!8.95e-11!1;CL:0000173!8.95e-11!1;CL:0002351!8.95e-11!1;CL:0000235!5.83e-09!10 | |||
|ontology_enrichment_celltype_v019=CL:0000167;1.67e-23;1!CL:0000164;1.67e-23;1!CL:0000502;1.67e-23;1!CL:0000172;1.67e-23;1!CL:0000173;1.67e-23;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000167,2.10e-23,1;CL:0000164,2.10e-23,1;CL:0000502,2.10e-23,1;CL:0000172,2.10e-23,1;CL:0000173,2.10e-23,1;CL:0002351,2.10e-23,1 | |||
|ontology_enrichment_development_v019=CL:0002351;1.67e-23;1!UBERON:0006298;4.59e-23;1 | |||
|ontology_enrichment_disease=DOID:4430!8.95e-11!1 | |||
|ontology_enrichment_disease_v019=DOID:4430;1.67e-23;1 | |||
|ontology_enrichment_disease_v019_2=DOID:4430,2.10e-23,1;DOID:0050687,2.10e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0000476!5.47e-13!3;UBERON:0000920!5.47e-13!3;UBERON:0003124!3.82e-12!7;UBERON:0001736!1.30e-10!1;UBERON:0006298!1.30e-10!1;UBERON:0006834!3.96e-10!1;UBERON:0007023!9.65e-08!115;UBERON:0001044!3.66e-07!6;UBERON:0003293!3.66e-07!6;UBERON:0003294!3.66e-07!6;UBERON:0010047!3.66e-07!6;UBERON:0000167!3.66e-07!6;UBERON:0000995!5.79e-07!21;UBERON:0000002!7.75e-07!6;UBERON:0001560!7.75e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0001736;4.59e-23;1!UBERON:0001044;1.17e-15;6!UBERON:0003293;1.17e-15;6!UBERON:0003294;1.17e-15;6!UBERON:0010047;1.17e-15;6!UBERON:0003408;1.17e-15;6!UBERON:0000167;1.17e-15;6!UBERON:0001829;3.06e-12;2!UBERON:0001041;2.99e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001736,5.13e-23,1;UBERON:0006298,5.13e-23,1;UBERON:0001044,1.13e-15,6;UBERON:0003293,1.13e-15,6;UBERON:0003294,1.13e-15,6;UBERON:0010047,1.13e-15,6;UBERON:0000167,1.13e-15,6;UBERON:0001829,3.24e-12,2;UBERON:0003408,8.46e-10,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.36852972734796,0,0,0,0,0,0,0,0,0,0,0,61.0152429489901,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153900517007594,0,0,0,0,0.31900115973192,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.6124209448053,1.97341156132701,1.72442459811739,0,0,0,0,0,0,0,0,0.85381197895741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606965604236632,0,0.266107110487916,0,0,0,0,0,0,0.39246546425257,0,0,0,0,0,0,0,1.16241425368125,0,0,0,0,0,3.44181887056222,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233939463462106,0,0,0,0,0,0,0,0,0,3.06379511232114,0,0,0,0,0,0,0,0,0,0,0,1.37618785021362,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573777643141411,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | |||
|short_description=p1@LOC388942 | |||
}} |
Revision as of 18:37, 12 September 2013
Short description: | p1@LOC388942 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_LOC388942_5end |
Coexpression cluster: | C15_anaplastic_small_skeletal_neuroblastoma_parietal_temporal_tongue |
Association with transcript: | 0bp_to_ENST00000398796, ENST00000442214, NR_033996, uc002rse.2, uc010fao.1_5end |
EntrezGene: | LOC388942 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
peptide hormone secreting cell | 2.10e-23 | 1 |
enteroendocrine cell | 2.10e-23 | 1 |
type D enteroendocrine cell | 2.10e-23 | 1 |
somatostatin secreting cell | 2.10e-23 | 1 |
pancreatic D cell | 2.10e-23 | 1 |
progenitor cell of endocrine pancreas | 2.10e-23 | 1 |
Ontology term | p-value | n |
---|---|---|
submandibular gland | 5.13e-23 | 1 |
submandibular gland primordium | 5.13e-23 | 1 |
saliva-secreting gland | 1.13e-15 | 6 |
gland of oral region | 1.13e-15 | 6 |
gland of foregut | 1.13e-15 | 6 |
oral gland | 1.13e-15 | 6 |
oral cavity | 1.13e-15 | 6 |
major salivary gland | 3.24e-12 | 2 |
gland of gut | 8.46e-10 | 10 |
Ontology term | p-value | n |
---|---|---|
somatostatinoma | 2.10e-23 | 1 |
cell type cancer | 2.10e-07 | 143 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.