FFCP PHASE1:Hg19::chr2:29336855..29336914,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=79745|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=26108|TSSclassifier=N|UniProt=A8K6D0,Q8N3C7|association_with_transcript=0bp_to_ENST00000402240,ENST00000404424,uc010ezm.1_5end|description=CAGE_peak_7_at_CLIP4_5end|id=chr2:29336855..29336914,+|ontology_enrichment_celltype=CL:0002057!5.62e-22!42;CL:0000860!1.23e-21!45;CL:0002194!2.31e-20!63;CL:0000576!2.31e-20!63;CL:0000040!2.31e-20!63;CL:0000559!2.31e-20!63;CL:0000839!6.08e-20!70;CL:0002009!6.14e-20!65;CL:0000557!1.07e-19!71;CL:0000766!3.58e-17!76;CL:0000063!7.13e-09!578;CL:0000066!2.73e-08!254;CL:0002076!8.65e-08!43;CL:0000763!4.55e-07!112;CL:0000049!4.55e-07!112;CL:0000077!7.74e-07!19|ontology_enrichment_celltype_v019=CL:0000860;6.62e-26;33!CL:0002057;6.62e-26;33!CL:0000473;1.37e-22;39!CL:0000234;1.37e-22;39!CL:0000576;2.32e-17;48!CL:0000766;4.01e-10;69|ontology_enrichment_celltype_v019_2=CL:0000473,9.28e-33,48;CL:0000234,9.28e-33,48;CL:0000860,1.09e-30,42;CL:0002057,1.09e-30,42;CL:0002194,3.17e-26,59;CL:0000576,3.17e-26,59;CL:0000040,3.17e-26,59;CL:0000559,3.17e-26,59;CL:0002009,6.02e-25,61;CL:0000557,8.29e-23,67;CL:0000839,4.23e-22,66;CL:0000766,3.18e-19,72;CL:0000763,1.21e-09,108;CL:0000049,1.21e-09,108;CL:0000066,7.86e-09,253;CL:0000076,1.20e-08,63;CL:0002087,7.29e-08,115;CL:0002031,3.94e-07,120|ontology_enrichment_development_v019=CL:0002057;7.07e-22;42|ontology_enrichment_disease=DOID:1749!1.36e-08!14;DOID:305!1.75e-08!106|ontology_enrichment_disease_v019=DOID:1749;1.22e-15;14|ontology_enrichment_disease_v019_2=DOID:1749,1.57e-15,14;DOID:305,8.35e-10,106;DOID:0050687,1.23e-07,143|ontology_enrichment_uberon=UBERON:0002371!8.21e-16!80;UBERON:0000062!3.72e-13!511;UBERON:0001474!5.54e-13!86;UBERON:0004765!1.28e-12!101;UBERON:0001434!1.28e-12!101;UBERON:0002390!1.31e-12!102;UBERON:0003061!1.31e-12!102;UBERON:0002193!1.10e-10!112;UBERON:0002405!7.40e-10!115;UBERON:0000467!5.33e-07!625;UBERON:0000480!7.20e-07!626|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.32e-18,76;UBERON:0001474,2.42e-16,82;UBERON:0004765,8.73e-16,90;UBERON:0002405,5.31e-13,93;UBERON:0001434,5.72e-13,100;UBERON:0002390,9.40e-12,98;UBERON:0003061,9.40e-12,98;UBERON:0002193,1.21e-09,108|phase1_expression=0.54503513781167,3.21150785836475,0.845726424575827,0,0.446961094427288,0.872338524100369,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.273748850145768,0.125542639594803,0.0764134057479513,0,0.236132343941038,0.393364276848904,0.767658796194425,0.464448369948228,0.919421224478927,0.30120591877825,4.43704812200145,0.154934401160603,0.142169232487422,0,0.553995408531877,0.601633342410425,0.868043482863407,0.895661896959697,0.971680998056939,1.03030227053675,3.48955773070955,3.02300754951048,1.4555043671269,3.25400651667958,2.46700732813095,4.95530193432166,2.01384674625505,1.5369642391746,3.54723344832878,1.72372840368309,3.87290810150296,1.35426486594342,3.9530891303947,2.18324920046277,3.59557575112135,1.53041946185451,4.17207735198922,4.47535988059329,0.329851300186716,1.39624560335142,1.27867425159808,1.45104619314292,1.13477044938228,1.24564449799115,1.50749199154046,1.0429658368404,3.25783267057675,3.02699751316684,2.94622108790052,3.16462387440884,1.69004229049553,1.4882300997553,2.09658645508376,0.898629049171961,1.50176892841506,0.964353520182481,1.99508920618874,2.58591680358817,2.55729815270488,0,0,0,0.853460445133014,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0.25618263945135,0,0,0,0,0,0,0,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0.144846518960824,0,0,0,0.221729397462564,0.087834785693126,0.0654895377488563,0,0,0.649094787309367,1.21890816109487,0.930705723632056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.98788780678127,0.12663051166458,0.264818361626438,0.286836620748814,0,1.12135520028461,0,0,0.311211035399766,0.134710672069688,0,0,0,0,0,0,0.149448680551801,0.352303495931295,0.161872944368132,0.280901613404497,0.408308342509787,0.61417158655884,0.516628905878827,0,0,0.910161361938026,0.718618141816238,0,0.375355559615893,0.831192346452549,0,0.612975591598039,0,0.113432183160021,0.358779271377724,0.640672166455702,0,1.50045548042201,0.206105058476878,0.257640540045629,1.48893485065272,0,0,0,0.460249493211497,0.161646056818812,1.06502877754984,0.302256294682921,0.169560592310488,3.86521706326594,1.09098448236334,2.29443676311203,0,0,0,0.207322110030741,0,0,0,0,0,1.39310378409594,0,0,0,0,0.110293972732394,0,0.237270619111097,0.134831308160164,0.196221465125346,0,0,0,0,0,0,0,0,0,0.491953754172454,0,1.20725313949488,1.1240175325762,0.502644862058154,0,0,0,0,0.115930404975077,0,0,0,0,0,0.858486162094873,1.47730203652438,4.44608103764552,2.37809859661965,3.74935335947108,0.839910640994298,1.70130116690864,2.32852159027406,2.3250715081117,0.766765358330422,0,0.176096868026452,0.207328115540772,0.144119953416961,0.50496973370552,0,0.381988425558278,0,0,0.102827492703324,0.901029173531752,0.571652865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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=79745 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26108 | |||
|TSSclassifier=N | |||
|UniProt=A8K6D0,Q8N3C7 | |||
|association_with_transcript=0bp_to_ENST00000402240,ENST00000404424,uc010ezm.1_5end | |||
|description=CAGE_peak_7_at_CLIP4_5end | |||
|id=chr2:29336855..29336914,+ | |||
|ontology_enrichment_celltype=CL:0002057!5.62e-22!42;CL:0000860!1.23e-21!45;CL:0002194!2.31e-20!63;CL:0000576!2.31e-20!63;CL:0000040!2.31e-20!63;CL:0000559!2.31e-20!63;CL:0000839!6.08e-20!70;CL:0002009!6.14e-20!65;CL:0000557!1.07e-19!71;CL:0000766!3.58e-17!76;CL:0000063!7.13e-09!578;CL:0000066!2.73e-08!254;CL:0002076!8.65e-08!43;CL:0000763!4.55e-07!112;CL:0000049!4.55e-07!112;CL:0000077!7.74e-07!19 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.62e-26;33!CL:0002057;6.62e-26;33!CL:0000473;1.37e-22;39!CL:0000234;1.37e-22;39!CL:0000576;2.32e-17;48!CL:0000766;4.01e-10;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,9.28e-33,48;CL:0000234,9.28e-33,48;CL:0000860,1.09e-30,42;CL:0002057,1.09e-30,42;CL:0002194,3.17e-26,59;CL:0000576,3.17e-26,59;CL:0000040,3.17e-26,59;CL:0000559,3.17e-26,59;CL:0002009,6.02e-25,61;CL:0000557,8.29e-23,67;CL:0000839,4.23e-22,66;CL:0000766,3.18e-19,72;CL:0000763,1.21e-09,108;CL:0000049,1.21e-09,108;CL:0000066,7.86e-09,253;CL:0000076,1.20e-08,63;CL:0002087,7.29e-08,115;CL:0002031,3.94e-07,120 | |||
|ontology_enrichment_development_v019=CL:0002057;7.07e-22;42 | |||
|ontology_enrichment_disease=DOID:1749!1.36e-08!14;DOID:305!1.75e-08!106 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.22e-15;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.57e-15,14;DOID:305,8.35e-10,106;DOID:0050687,1.23e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0002371!8.21e-16!80;UBERON:0000062!3.72e-13!511;UBERON:0001474!5.54e-13!86;UBERON:0004765!1.28e-12!101;UBERON:0001434!1.28e-12!101;UBERON:0002390!1.31e-12!102;UBERON:0003061!1.31e-12!102;UBERON:0002193!1.10e-10!112;UBERON:0002405!7.40e-10!115;UBERON:0000467!5.33e-07!625;UBERON:0000480!7.20e-07!626 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.32e-18,76;UBERON:0001474,2.42e-16,82;UBERON:0004765,8.73e-16,90;UBERON:0002405,5.31e-13,93;UBERON:0001434,5.72e-13,100;UBERON:0002390,9.40e-12,98;UBERON:0003061,9.40e-12,98;UBERON:0002193,1.21e-09,108 | |||
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| |||
|short_description=p7@CLIP4 | |||
}} |
Revision as of 18:14, 12 September 2013
Short description: | p7@CLIP4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_CLIP4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000402240, ENST00000404424, uc010ezm.1_5end |
EntrezGene: | CLIP4 |
HGNC: | 26108 |
UniProt: | A8K6D0Q8N3C7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 9.28e-33 | 48 |
phagocyte | 9.28e-33 | 48 |
classical monocyte | 1.09e-30 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.09e-30 | 42 |
monopoietic cell | 3.17e-26 | 59 |
monocyte | 3.17e-26 | 59 |
monoblast | 3.17e-26 | 59 |
promonocyte | 3.17e-26 | 59 |
macrophage dendritic cell progenitor | 6.02e-25 | 61 |
granulocyte monocyte progenitor cell | 8.29e-23 | 67 |
myeloid lineage restricted progenitor cell | 4.23e-22 | 66 |
myeloid leukocyte | 3.18e-19 | 72 |
myeloid cell | 1.21e-09 | 108 |
common myeloid progenitor | 1.21e-09 | 108 |
epithelial cell | 7.86e-09 | 253 |
squamous epithelial cell | 1.20e-08 | 63 |
nongranular leukocyte | 7.29e-08 | 115 |
hematopoietic lineage restricted progenitor cell | 3.94e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.32e-18 | 76 |
bone element | 2.42e-16 | 82 |
skeletal element | 8.73e-16 | 90 |
immune system | 5.31e-13 | 93 |
skeletal system | 5.72e-13 | 100 |
hematopoietic system | 9.40e-12 | 98 |
blood island | 9.40e-12 | 98 |
hemolymphoid system | 1.21e-09 | 108 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.57e-15 | 14 |
carcinoma | 8.35e-10 | 106 |
cell type cancer | 1.23e-07 | 143 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.