FFCP PHASE1:Hg19::chr2:240158575..240158585,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=9759|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=14063|TSSclassifier=W|UniProt=|association_with_transcript=-210bp_to_ENST00000496347_5end|coexpression_cluster_id=C12|description=CAGE_peak_25_at_HDAC4_5end|id=chr2:240158575..240158585,-|ontology_enrichment_celltype=CL:0002274!5.60e-27!5;CL:0000457!5.60e-27!5;CL:0002191!5.60e-27!5;CL:0000097!5.60e-27!5;CL:0000831!5.60e-27!5;CL:0002028!5.60e-27!5;CL:0000163!4.28e-15!9|ontology_enrichment_celltype_v019=CL:0000097;1.56e-71;5!CL:0002032;2.70e-40;1!CL:0000557;2.70e-40;1!CL:0000163;2.91e-40;9!CL:0000151;8.10e-11;36|ontology_enrichment_celltype_v019_2=CL:0000097,1.56e-71,5;CL:0002028,1.56e-71,5;CL:0000163,2.91e-40,9;CL:0000151,9.21e-11,36;CL:0000557,5.22e-10,67|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:225!2.35e-09!1|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000178!1.87e-13!15;UBERON:0000179!1.87e-13!15;UBERON:0000463!1.87e-13!15;UBERON:0002390!5.83e-13!102;UBERON:0003061!5.83e-13!102;UBERON:0006947!1.10e-11!3;UBERON:0004054!1.10e-11!3;UBERON:0002193!1.37e-11!112;UBERON:0000998!1.56e-09!1;UBERON:0006868!1.56e-09!1;UBERON:0007023!2.32e-09!115;UBERON:0001301!3.00e-09!1;UBERON:0006834!4.50e-09!1;UBERON:0005904!5.51e-09!4|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.23e-10,98;UBERON:0003061,1.23e-10,98;UBERON:0002193,1.03e-09,108;UBERON:0002371,6.50e-09,76;UBERON:0001474,2.59e-08,82;UBERON:0004765,1.24e-07,90;UBERON:0002405,2.08e-07,93;UBERON:0001434,6.20e-07,100|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.528290604079356,2.48793738648926,3.45887888200707,2.39860623510122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238231775457789,0.411362273086194,1.29694662238543,0,0.79312517629427,0,0,0,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27746588066972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77380195455795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18628920882415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0.213383459388282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122241444182866,0,0,0,0|short_description=p25@HDAC4}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=9759 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14063 | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=-210bp_to_ENST00000496347_5end | |||
|coexpression_cluster_id=C12 | |||
|description=CAGE_peak_25_at_HDAC4_5end | |||
|id=chr2:240158575..240158585,- | |||
|ontology_enrichment_celltype=CL:0002274!5.60e-27!5;CL:0000457!5.60e-27!5;CL:0002191!5.60e-27!5;CL:0000097!5.60e-27!5;CL:0000831!5.60e-27!5;CL:0002028!5.60e-27!5;CL:0000163!4.28e-15!9 | |||
|ontology_enrichment_celltype_v019=CL:0000097;1.56e-71;5!CL:0002032;2.70e-40;1!CL:0000557;2.70e-40;1!CL:0000163;2.91e-40;9!CL:0000151;8.10e-11;36 | |||
|ontology_enrichment_celltype_v019_2=CL:0000097,1.56e-71,5;CL:0002028,1.56e-71,5;CL:0000163,2.91e-40,9;CL:0000151,9.21e-11,36;CL:0000557,5.22e-10,67 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:225!2.35e-09!1 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!1.87e-13!15;UBERON:0000179!1.87e-13!15;UBERON:0000463!1.87e-13!15;UBERON:0002390!5.83e-13!102;UBERON:0003061!5.83e-13!102;UBERON:0006947!1.10e-11!3;UBERON:0004054!1.10e-11!3;UBERON:0002193!1.37e-11!112;UBERON:0000998!1.56e-09!1;UBERON:0006868!1.56e-09!1;UBERON:0007023!2.32e-09!115;UBERON:0001301!3.00e-09!1;UBERON:0006834!4.50e-09!1;UBERON:0005904!5.51e-09!4 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.23e-10,98;UBERON:0003061,1.23e-10,98;UBERON:0002193,1.03e-09,108;UBERON:0002371,6.50e-09,76;UBERON:0001474,2.59e-08,82;UBERON:0004765,1.24e-07,90;UBERON:0002405,2.08e-07,93;UBERON:0001434,6.20e-07,100 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.528290604079356,2.48793738648926,3.45887888200707,2.39860623510122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238231775457789,0.411362273086194,1.29694662238543,0,0.79312517629427,0,0,0,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27746588066972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77380195455795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18628920882415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0.213383459388282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | |||
|short_description=p25@HDAC4 | |||
}} |
Revision as of 17:42, 12 September 2013
Short description: | p25@HDAC4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_25_at_HDAC4_5end |
Coexpression cluster: | C12_Mast_Basophils_immature_chorionic_mature_CD14_Eosinophils |
Association with transcript: | -210bp_to_ENST00000496347_5end |
EntrezGene: | HDAC4 |
HGNC: | 14063 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mast cell | 1.56e-71 | 5 |
basophil mast progenitor cell | 1.56e-71 | 5 |
endocrine cell | 2.91e-40 | 9 |
secretory cell | 9.21e-11 | 36 |
granulocyte monocyte progenitor cell | 5.22e-10 | 67 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.23e-10 | 98 |
blood island | 1.23e-10 | 98 |
hemolymphoid system | 1.03e-09 | 108 |
bone marrow | 6.50e-09 | 76 |
bone element | 2.59e-08 | 82 |
skeletal element | 1.24e-07 | 90 |
immune system | 2.08e-07 | 93 |
skeletal system | 6.20e-07 | 100 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.