FFCP PHASE1:Mm9::chr10:55835198..55835229,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=0|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr10:55835198..55835229,+|id=chr10:55835198..55835229,+|ontology_enrichment_celltype=CL:0000117!2.53e-09!23;CL:0000337!2.53e-09!23;CL:0002319!3.75e-08!43;CL:0000221!1.15e-07!44;CL:0000133!1.15e-07!44|ontology_enrichment_celltype_v019_2=CL:0000117,1.12e-08,23;CL:0000337,1.12e-08,23;CL:0002614,3.97e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!1.04e-18!52;UBERON:0005068!1.04e-18!52;UBERON:0006241!1.04e-18!52;UBERON:0007135!1.04e-18!52;UBERON:0000073!2.72e-17!75;UBERON:0001016!2.72e-17!75;UBERON:0007811!1.28e-16!86;UBERON:0001017!1.32e-16!73;UBERON:0005743!1.32e-16!73;UBERON:0000153!4.82e-16!94;UBERON:0000955!5.85e-16!50;UBERON:0006238!5.85e-16!50;UBERON:0004121!7.20e-16!102;UBERON:0000924!7.20e-16!102;UBERON:0006601!7.20e-16!102;UBERON:0002346!8.04e-16!71;UBERON:0003075!8.04e-16!71;UBERON:0007284!8.04e-16!71;UBERON:0002616!8.29e-16!49;UBERON:0000033!1.29e-14!63;UBERON:0003080!1.38e-13!40;UBERON:0003056!1.39e-13!49;UBERON:0002020!3.46e-13!34;UBERON:0002780!4.41e-13!39;UBERON:0001890!4.41e-13!39;UBERON:0006240!4.41e-13!39;UBERON:0002791!4.89e-11!29;UBERON:0003528!4.89e-11!29;UBERON:0001893!4.89e-11!29;UBERON:0000956!3.58e-09!21;UBERON:0001869!3.58e-09!21;UBERON:0000203!3.58e-09!21;UBERON:0002619!3.49e-08!17;UBERON:0000064!3.98e-07!99|ontology_enrichment_uberon_v019_2=UBERON:0002780,5.19e-12,39;UBERON:0001890,5.19e-12,39;UBERON:0006240,5.19e-12,39;UBERON:0003080,1.14e-11,40;UBERON:0002020,1.66e-11,34;UBERON:0003528,3.72e-11,29;UBERON:0002791,3.72e-11,29;UBERON:0001893,3.72e-11,29;UBERON:0001049,2.77e-10,52;UBERON:0005068,2.77e-10,52;UBERON:0006241,2.77e-10,52;UBERON:0007135,2.77e-10,52;UBERON:0002616,6.38e-10,46;UBERON:0000073,7.84e-10,54;UBERON:0000955,1.13e-09,47;UBERON:0006238,1.13e-09,47;UBERON:0003056,3.30e-09,49;UBERON:0010371,4.06e-08,73;UBERON:0001017,4.88e-08,73;UBERON:0002346,5.41e-08,64;UBERON:0003075,5.41e-08,64;UBERON:0007284,5.41e-08,64;UBERON:0001016,9.11e-08,75;UBERON:0002038,3.97e-07,3;UBERON:0009663,3.97e-07,3;UBERON:0009661,3.97e-07,3;UBERON:0000125,3.97e-07,3;UBERON:0002308,3.97e-07,3;UBERON:0000956,4.82e-07,21;UBERON:0001869,4.82e-07,21;UBERON:0000203,4.82e-07,21;UBERON:0004121,8.80e-07,95;UBERON:0000924,8.80e-07,95;UBERON:0006601,8.80e-07,95|phase1_expression=0.640595388419176,0,0,0,0,0,0,0.774739940649458,0.140788722151667,0,0,0.159544317990673,0.171200729931206,0.34968160967599,0,0.202475267389826,0,0,0.137114433605739,0,5.78294373027274,0,0,0,0.22940928106717,0,0,0,0.190023419456374,0,0,0,0,0,0,0,0,0.418531630736908,0,0,0,0,0.485510353031154,0,0,0,0.782391344348039,0.872100625521786,1.09843091367236,0.388859798148567,0.419959264876088,0,0,1.45072428402269,0,0,0,0,0.606949382578793,1.05798195854407,0.633831403506179,0,0,0,0,0.7104801149461,0,0.384218305321555,0.518448061542388,1.08004750665353,0.420649922702764,0.285650984403804,1.10434270475807,0.61245399607477,0.479227355091182,1.83843757322004,0,0.638436690425939,0.307213066512487,0.923204014111357,1.46380229763855,0,2.23346399201105,1.68828783009504,0.916789486660861,0.589257170947335,0.854230084794618,0.745597783301202,0.302904773332736,0.755715601067855,0.289864488701678,0,0,0,0,0,1.40444420131752,0,0,0,0,0,0,0,0.216491041011214,0.253359865475099,0,0.79928715803342,0,0,0,0.608930956624282,0,0.452167921657868,0.352766121407114,0.251333182659351,0,0,0,0.161766849947409,0,0,0,0.292780797011547,0.83778682725382,0.255457055208591,0.718890747035522,0.599902730993408,0.762421362438388,0.748953197024114,0,0.502617408451458,0.173824320192276,0.767146371990992,0.20778804455956,0.324482526135515,0.203678727700633,0.373220911830279,0.252722758433675,0,0.130120442962704,0.229902104433473,0.360124259610698,0.150704817835715,0.408218994907967,0.512454881139399,0.374806898238915,0.258703370739016,0.431135985865684,0,0.351902248327898,0,0.278047249225598,0.348252166522167,0.205782136407943,0.199034266818493,0.702213187313235,0.51469581422943,0.568326998791185,0,0,0,0.23674473558521,0,0,0,0,0.116765342367169,0,0,0.0810688095458557,0,0,0.134206418760372,0.630869845692382,1.3377599609307,0,0,0.213288250535234,0,0,0.201683524623343,0.22237804384487,0,0,0,0,0,0,0,0,0,0.758671603812327,0.114248512609729,0,0,0,0.140271639780637,0,0,0,0.123397163921801,0,0,0.196558995113203,0.224862112384854,0.202860121388503,0,0,0,0.162135226775035,0,0,0,0,0,0,0,0,0.189491411770485,0,0.169745085775188,0,0.335012514883631,0,0.195133647857799,0.157635144106191,0,0,0,0,0.144649058581512,0,0,1.47529281905711,0.551873492609465,0.321101179975584,0.703270119553219,0,0,0,0,0,0,0.891194696329576,0.283076530788832,0,0.292255857911312,0,0.321321316421807,0.425820255624806,0,0.162886959353576,0,0,0,0,0,0.295301892880773,0.307435147943927,0.258428293168221,0,0,0,0,0,1.36175842301515,0,0.517434735131018,0.428674070063185,1.24138163549592,0.891844088010353,0.164549020602121,0.608929898229199,0.2346717080637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| ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=0 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr10:55835198..55835229,+ | |||
|id=chr10:55835198..55835229,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.53e-09!23;CL:0000337!2.53e-09!23;CL:0002319!3.75e-08!43;CL:0000221!1.15e-07!44;CL:0000133!1.15e-07!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.12e-08,23;CL:0000337,1.12e-08,23;CL:0002614,3.97e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.04e-18!52;UBERON:0005068!1.04e-18!52;UBERON:0006241!1.04e-18!52;UBERON:0007135!1.04e-18!52;UBERON:0000073!2.72e-17!75;UBERON:0001016!2.72e-17!75;UBERON:0007811!1.28e-16!86;UBERON:0001017!1.32e-16!73;UBERON:0005743!1.32e-16!73;UBERON:0000153!4.82e-16!94;UBERON:0000955!5.85e-16!50;UBERON:0006238!5.85e-16!50;UBERON:0004121!7.20e-16!102;UBERON:0000924!7.20e-16!102;UBERON:0006601!7.20e-16!102;UBERON:0002346!8.04e-16!71;UBERON:0003075!8.04e-16!71;UBERON:0007284!8.04e-16!71;UBERON:0002616!8.29e-16!49;UBERON:0000033!1.29e-14!63;UBERON:0003080!1.38e-13!40;UBERON:0003056!1.39e-13!49;UBERON:0002020!3.46e-13!34;UBERON:0002780!4.41e-13!39;UBERON:0001890!4.41e-13!39;UBERON:0006240!4.41e-13!39;UBERON:0002791!4.89e-11!29;UBERON:0003528!4.89e-11!29;UBERON:0001893!4.89e-11!29;UBERON:0000956!3.58e-09!21;UBERON:0001869!3.58e-09!21;UBERON:0000203!3.58e-09!21;UBERON:0002619!3.49e-08!17;UBERON:0000064!3.98e-07!99 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002780,5.19e-12,39;UBERON:0001890,5.19e-12,39;UBERON:0006240,5.19e-12,39;UBERON:0003080,1.14e-11,40;UBERON:0002020,1.66e-11,34;UBERON:0003528,3.72e-11,29;UBERON:0002791,3.72e-11,29;UBERON:0001893,3.72e-11,29;UBERON:0001049,2.77e-10,52;UBERON:0005068,2.77e-10,52;UBERON:0006241,2.77e-10,52;UBERON:0007135,2.77e-10,52;UBERON:0002616,6.38e-10,46;UBERON:0000073,7.84e-10,54;UBERON:0000955,1.13e-09,47;UBERON:0006238,1.13e-09,47;UBERON:0003056,3.30e-09,49;UBERON:0010371,4.06e-08,73;UBERON:0001017,4.88e-08,73;UBERON:0002346,5.41e-08,64;UBERON:0003075,5.41e-08,64;UBERON:0007284,5.41e-08,64;UBERON:0001016,9.11e-08,75;UBERON:0002038,3.97e-07,3;UBERON:0009663,3.97e-07,3;UBERON:0009661,3.97e-07,3;UBERON:0000125,3.97e-07,3;UBERON:0002308,3.97e-07,3;UBERON:0000956,4.82e-07,21;UBERON:0001869,4.82e-07,21;UBERON:0000203,4.82e-07,21;UBERON:0004121,8.80e-07,95;UBERON:0000924,8.80e-07,95;UBERON:0006601,8.80e-07,95 | |||
|phase1_expression=0.640595388419176,0,0,0,0,0,0,0.774739940649458,0.140788722151667,0,0,0.159544317990673,0.171200729931206,0.34968160967599,0,0.202475267389826,0,0,0.137114433605739,0,5.78294373027274,0,0,0,0.22940928106717,0,0,0,0.190023419456374,0,0,0,0,0,0,0,0,0.418531630736908,0,0,0,0,0.485510353031154,0,0,0,0.782391344348039,0.872100625521786,1.09843091367236,0.388859798148567,0.419959264876088,0,0,1.45072428402269,0,0,0,0,0.606949382578793,1.05798195854407,0.633831403506179,0,0,0,0,0.7104801149461,0,0.384218305321555,0.518448061542388,1.08004750665353,0.420649922702764,0.285650984403804,1.10434270475807,0.61245399607477,0.479227355091182,1.83843757322004,0,0.638436690425939,0.307213066512487,0.923204014111357,1.46380229763855,0,2.23346399201105,1.68828783009504,0.916789486660861,0.589257170947335,0.854230084794618,0.745597783301202,0.302904773332736,0.755715601067855,0.289864488701678,0,0,0,0,0,1.40444420131752,0,0,0,0,0,0,0,0.216491041011214,0.253359865475099,0,0.79928715803342,0,0,0,0.608930956624282,0,0.452167921657868,0.352766121407114,0.251333182659351,0,0,0,0.161766849947409,0,0,0,0.292780797011547,0.83778682725382,0.255457055208591,0.718890747035522,0.599902730993408,0.762421362438388,0.748953197024114,0,0.502617408451458,0.173824320192276,0.767146371990992,0.20778804455956,0.324482526135515,0.203678727700633,0.373220911830279,0.252722758433675,0,0.130120442962704,0.229902104433473,0.360124259610698,0.150704817835715,0.408218994907967,0.512454881139399,0.374806898238915,0.258703370739016,0.431135985865684,0,0.351902248327898,0,0.278047249225598,0.348252166522167,0.205782136407943,0.199034266818493,0.702213187313235,0.51469581422943,0.568326998791185,0,0,0,0.23674473558521,0,0,0,0,0.116765342367169,0,0,0.0810688095458557,0,0,0.134206418760372,0.630869845692382,1.3377599609307,0,0,0.213288250535234,0,0,0.201683524623343,0.22237804384487,0,0,0,0,0,0,0,0,0,0.758671603812327,0.114248512609729,0,0,0,0.140271639780637,0,0,0,0.123397163921801,0,0,0.196558995113203,0.224862112384854,0.202860121388503,0,0,0,0.162135226775035,0,0,0,0,0,0,0,0,0.189491411770485,0,0.169745085775188,0,0.335012514883631,0,0.195133647857799,0.157635144106191,0,0,0,0,0.144649058581512,0,0,1.47529281905711,0.551873492609465,0.321101179975584,0.703270119553219,0,0,0,0,0,0,0.891194696329576,0.283076530788832,0,0.292255857911312,0,0.321321316421807,0.425820255624806,0,0.162886959353576,0,0,0,0,0,0.295301892880773,0.307435147943927,0.258428293168221,0,0,0,0,0,1.36175842301515,0,0.517434735131018,0.428674070063185,1.24138163549592,0.891844088010353,0.164549020602121,0.608929898229199,0.23467170806371,0.42366414172764,0,0.32977250588296,0.161464426695906,0.0603129249281559,0,0.164140899745061,0,0.556275906031529,0.341741761595705,0.206386867963223,0.370389054739423,0,0,0,0.679913719975421,0.139951452323658,0.414599921413271,0,0,0.203319467126849,0.108005340821801,0.209088296014469,0,0,0,0.26175594198403,0,0,35.512655137104,0.149516546043979,0,0,0.129159823477731,0.168956125490778,0,0,0,21.5009867535145,22.1783104818556,0.316011120628178,0.810900861160657,0.410843828659309,0.51968329191118,0.716106782669926,0,0.721172697119813,0.886137163047463,0.100966449948148,0.990688486514998,0.907435666231565,0.779663045918019,0.481059208201647,0.935015217452552,0,0,0,0,0,0.563047426353546,0.183151624267265,0,0,0.564751842617067,0.920650473014354,1.71868654031819,1.20297227640581,0.685082519770642,0.755393897389701,0.675022500231806,0.900642406448441,0.453142408984205,0,0.415149390336707,0.399024873401031,0.682934423016537,0,0.209613162627982,0.551530525350042,0,0,0.320919209591815,0,0.25347929989024,0,0.0936415074698824,0.0640251524048693,0.17230640686684,0.476293691283074,0.115884325944855,0.578727661391115,0.412085900803307,0.294397840268795,0,0.177475806159338,0,0.145346416632329,0.0941093804153306,0.0846146078916765,0,0.263069711437843,0,0,0.355905054372522,0.0985044823755635,0.409231043169689,0,0.385813221962283,0,0,0.429742108096597,0,0.441182838239031,0 | |||
|short_description=p@chr10:55835198..55835229,+ | |||
}} |
Revision as of 16:54, 12 September 2013
Short description: | p@chr10:55835198..55835229, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr10:55835198..55835229, + |
Coexpression cluster: | MCL_coexpression_mm9:0 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.12e-08 | 23 |
neuroblast (sensu Vertebrata) | 1.12e-08 | 23 |
neuron of the substantia nigra | 3.97e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
regional part of forebrain | 5.19e-12 | 39 |
forebrain | 5.19e-12 | 39 |
future forebrain | 5.19e-12 | 39 |
anterior neural tube | 1.14e-11 | 40 |
gray matter | 1.66e-11 | 34 |
brain grey matter | 3.72e-11 | 29 |
regional part of telencephalon | 3.72e-11 | 29 |
telencephalon | 3.72e-11 | 29 |
neural tube | 2.77e-10 | 52 |
neural rod | 2.77e-10 | 52 |
future spinal cord | 2.77e-10 | 52 |
neural keel | 2.77e-10 | 52 |
regional part of brain | 6.38e-10 | 46 |
regional part of nervous system | 7.84e-10 | 54 |
brain | 1.13e-09 | 47 |
future brain | 1.13e-09 | 47 |
pre-chordal neural plate | 3.30e-09 | 49 |
ecto-epithelium | 4.06e-08 | 73 |
central nervous system | 4.88e-08 | 73 |
neurectoderm | 5.41e-08 | 64 |
neural plate | 5.41e-08 | 64 |
presumptive neural plate | 5.41e-08 | 64 |
nervous system | 9.11e-08 | 75 |
substantia nigra | 3.97e-07 | 3 |
telencephalic nucleus | 3.97e-07 | 3 |
midbrain nucleus | 3.97e-07 | 3 |
neural nucleus | 3.97e-07 | 3 |
nucleus of brain | 3.97e-07 | 3 |
cerebral cortex | 4.82e-07 | 21 |
cerebral hemisphere | 4.82e-07 | 21 |
pallium | 4.82e-07 | 21 |
ectoderm-derived structure | 8.80e-07 | 95 |
ectoderm | 8.80e-07 | 95 |
presumptive ectoderm | 8.80e-07 | 95 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.