FFCP PHASE1:Hg19::chr2:191696381..191696384,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr2:191696381..191696384,-|id=chr2:191696381..191696384,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000322;1.91e-44;3!CL:0000319;5.97e-34;1!CL:0000159;9.86e-18;2!CL:0002202;1.31e-15;9!CL:0002632;1.31e-15;9!CL:0002368;3.94e-11;13!CL:0000082;6.36e-08;19!CL:0002076;1.41e-07;42!CL:0002149;7.17e-07;6!CL:0002255;7.17e-07;6|ontology_enrichment_celltype_v019_2=CL:0000322,1.53e-44,3;CL:0000319,5.05e-34,1;CL:0000159,9.07e-18,2;CL:0002202,1.22e-15,9;CL:0002632,1.22e-15,9;CL:0002368,3.75e-11,13;CL:0000082,6.15e-08,19;CL:0002076,7.76e-08,42;CL:0002149,7.17e-07,6;CL:0002255,7.17e-07,6|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:3910!8.39e-07!2|ontology_enrichment_disease_v019=DOID:3910;5.53e-66;2!DOID:3030;5.97e-34;1!DOID:3908;3.55e-27;5!DOID:1325;9.48e-20;7!DOID:3904;9.48e-20;7!DOID:3905;1.31e-15;9!DOID:1324;8.85e-10;15!DOID:0050615;3.14e-09;16!DOID:3001;7.17e-07;6|ontology_enrichment_disease_v019_2=DOID:3910,3.96e-66,2;DOID:3030,5.05e-34,1;DOID:3908,3.11e-27,5;DOID:1325,8.62e-20,7;DOID:3904,8.62e-20,7;DOID:3905,1.22e-15,9;DOID:1324,8.46e-10,15;DOID:0050615,3.01e-09,16;DOID:305,3.20e-08,106;DOID:3001,7.17e-07,6|ontology_enrichment_uberon=UBERON:0004903!8.39e-07!2;UBERON:0002173!8.39e-07!2;UBERON:0002186!8.39e-07!2|ontology_enrichment_uberon_v019=UBERON:0004903;5.53e-66;2!UBERON:0002173;5.53e-66;2!UBERON:0002186;5.53e-66;2!UBERON:0004821;1.91e-44;3!UBERON:0007499;1.91e-44;3!UBERON:0003215;1.91e-44;3!UBERON:0010368;1.91e-44;3!UBERON:0009911;1.91e-44;3!UBERON:0002299;1.91e-44;3!UBERON:0006524;1.91e-44;3!UBERON:0008874;1.91e-44;3!UBERON:0002169;1.91e-44;3!UBERON:0004894;1.91e-44;3!UBERON:0009856;1.17e-33;4!UBERON:0000058;3.71e-14;10!UBERON:0007196;8.85e-10;15!UBERON:0001558;8.85e-10;15!UBERON:0004802;6.36e-08;19!UBERON:0000115;6.36e-08;19!UBERON:0002048;5.74e-07;22!UBERON:0000487;5.74e-07;22!UBERON:0004807;5.74e-07;22!UBERON:0000117;5.74e-07;22!UBERON:0000171;5.74e-07;22!UBERON:0000170;5.74e-07;22|ontology_enrichment_uberon_v019_2=UBERON:0004903,3.96e-66,2;UBERON:0002173,3.96e-66,2;UBERON:0002186,3.96e-66,2;UBERON:0004821,1.53e-44,3;UBERON:0003215,1.53e-44,3;UBERON:0010368,1.53e-44,3;UBERON:0009911,1.53e-44,3;UBERON:0002299,1.53e-44,3;UBERON:0006524,1.53e-44,3;UBERON:0008874,1.53e-44,3;UBERON:0002169,1.53e-44,3;UBERON:0004894,1.53e-44,3;UBERON:0007196,8.46e-10,15;UBERON:0001558,8.46e-10,15;UBERON:0000058,6.15e-08,19;UBERON:0004802,6.15e-08,19;UBERON:0000115,6.15e-08,19;UBERON:0002048,5.57e-07,22;UBERON:0000487,5.57e-07,22;UBERON:0000117,5.57e-07,22;UBERON:0000171,5.57e-07,22;UBERON:0000170,5.57e-07,22;UBERON:0005597,5.57e-07,22;UBERON:0000118,5.57e-07,22|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639337125799041,0,0,0,0,0.56738522469114,0,0.251248665256743,0,0,0,0,0.316462387440884,0,0,0,0,0.150176892841506,0,0,0,0,0,0.546138611262131,0,0,0,0,0,0,0,0,0.382273228125229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0.130059347559878,0.164437904603676,0,0.579606171470105,0,0,0,0,0.383220493601921,0,0.253019692019503,0,0,0,0,0.127986611154418,0,0,0,0.403213486449465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.358779271377724,0,0,0,0,0,0,0,0,0.252433774244115,0.0920498986422993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0.088048434013226,0,0.144119953416961,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285955987316295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224170287987055,0,0.215627574859517,0.128343036279748,0,0,0,0.335032530668698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0.507447609232169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199579371432817,0,0,0,0.280797178113459,0,0,2.50634477090067,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0.18714054040822,0,0,0,1.13654458722565,0.23874448473769,0,0.921482106297696,0,0,0.111308705022906,0,0,0,0,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,1.5255219017566,0,0.344743373241465,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0.889563386041866,0,0,0,0,0,0.182454789215666,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,4.55375273647668,0,0,0.0979923974143777,0.174118413160805,0,0,0.0967563312890851,0,0.1642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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr2:191696381..191696384,- | |||
|id=chr2:191696381..191696384,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000322;1.91e-44;3!CL:0000319;5.97e-34;1!CL:0000159;9.86e-18;2!CL:0002202;1.31e-15;9!CL:0002632;1.31e-15;9!CL:0002368;3.94e-11;13!CL:0000082;6.36e-08;19!CL:0002076;1.41e-07;42!CL:0002149;7.17e-07;6!CL:0002255;7.17e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000322,1.53e-44,3;CL:0000319,5.05e-34,1;CL:0000159,9.07e-18,2;CL:0002202,1.22e-15,9;CL:0002632,1.22e-15,9;CL:0002368,3.75e-11,13;CL:0000082,6.15e-08,19;CL:0002076,7.76e-08,42;CL:0002149,7.17e-07,6;CL:0002255,7.17e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3910!8.39e-07!2 | |||
|ontology_enrichment_disease_v019=DOID:3910;5.53e-66;2!DOID:3030;5.97e-34;1!DOID:3908;3.55e-27;5!DOID:1325;9.48e-20;7!DOID:3904;9.48e-20;7!DOID:3905;1.31e-15;9!DOID:1324;8.85e-10;15!DOID:0050615;3.14e-09;16!DOID:3001;7.17e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3910,3.96e-66,2;DOID:3030,5.05e-34,1;DOID:3908,3.11e-27,5;DOID:1325,8.62e-20,7;DOID:3904,8.62e-20,7;DOID:3905,1.22e-15,9;DOID:1324,8.46e-10,15;DOID:0050615,3.01e-09,16;DOID:305,3.20e-08,106;DOID:3001,7.17e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0004903!8.39e-07!2;UBERON:0002173!8.39e-07!2;UBERON:0002186!8.39e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0004903;5.53e-66;2!UBERON:0002173;5.53e-66;2!UBERON:0002186;5.53e-66;2!UBERON:0004821;1.91e-44;3!UBERON:0007499;1.91e-44;3!UBERON:0003215;1.91e-44;3!UBERON:0010368;1.91e-44;3!UBERON:0009911;1.91e-44;3!UBERON:0002299;1.91e-44;3!UBERON:0006524;1.91e-44;3!UBERON:0008874;1.91e-44;3!UBERON:0002169;1.91e-44;3!UBERON:0004894;1.91e-44;3!UBERON:0009856;1.17e-33;4!UBERON:0000058;3.71e-14;10!UBERON:0007196;8.85e-10;15!UBERON:0001558;8.85e-10;15!UBERON:0004802;6.36e-08;19!UBERON:0000115;6.36e-08;19!UBERON:0002048;5.74e-07;22!UBERON:0000487;5.74e-07;22!UBERON:0004807;5.74e-07;22!UBERON:0000117;5.74e-07;22!UBERON:0000171;5.74e-07;22!UBERON:0000170;5.74e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,3.96e-66,2;UBERON:0002173,3.96e-66,2;UBERON:0002186,3.96e-66,2;UBERON:0004821,1.53e-44,3;UBERON:0003215,1.53e-44,3;UBERON:0010368,1.53e-44,3;UBERON:0009911,1.53e-44,3;UBERON:0002299,1.53e-44,3;UBERON:0006524,1.53e-44,3;UBERON:0008874,1.53e-44,3;UBERON:0002169,1.53e-44,3;UBERON:0004894,1.53e-44,3;UBERON:0007196,8.46e-10,15;UBERON:0001558,8.46e-10,15;UBERON:0000058,6.15e-08,19;UBERON:0004802,6.15e-08,19;UBERON:0000115,6.15e-08,19;UBERON:0002048,5.57e-07,22;UBERON:0000487,5.57e-07,22;UBERON:0000117,5.57e-07,22;UBERON:0000171,5.57e-07,22;UBERON:0000170,5.57e-07,22;UBERON:0005597,5.57e-07,22;UBERON:0000118,5.57e-07,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639337125799041,0,0,0,0,0.56738522469114,0,0.251248665256743,0,0,0,0,0.316462387440884,0,0,0,0,0.150176892841506,0,0,0,0,0,0.546138611262131,0,0,0,0,0,0,0,0,0.382273228125229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0.130059347559878,0.164437904603676,0,0.579606171470105,0,0,0,0,0.383220493601921,0,0.253019692019503,0,0,0,0,0.127986611154418,0,0,0,0.403213486449465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.358779271377724,0,0,0,0,0,0,0,0,0.252433774244115,0.0920498986422993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0.088048434013226,0,0.144119953416961,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285955987316295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224170287987055,0,0.215627574859517,0.128343036279748,0,0,0,0.335032530668698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0.507447609232169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199579371432817,0,0,0,0.280797178113459,0,0,2.50634477090067,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0.18714054040822,0,0,0,1.13654458722565,0.23874448473769,0,0.921482106297696,0,0,0.111308705022906,0,0,0,0,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,1.5255219017566,0,0.344743373241465,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0.889563386041866,0,0,0,0,0,0.182454789215666,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,4.55375273647668,0,0,0.0979923974143777,0.174118413160805,0,0,0.0967563312890851,0,0.164230914106418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124252535565433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77380195455795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197611631897944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0,0,0.231522474323834,0,0,0,0,0,0,0.337884881306145,0,0,0,0,0.194860308839388,0,0,0,1.2288645437686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.619678821295011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.60511520611056,0,0,0,0.147856086217045,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.472775363535873,0.333694205676207,0,0,0.280272163313789,0,0,0,0,0,0,0,0,0,0,0.691259661814092,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109940516745429,0,0,0,0,0,0,0,0,0,0,0.187967835959707,0,0.0999411559249289,0,1.05868461514708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,0,0.106727345877715,0,0,0,0,0,0,0.201273793591026,0 | |||
|short_description=p@chr2:191696381..191696384,- | |||
}} |
Revision as of 15:43, 12 September 2013
Short description: | p@chr2:191696381..191696384, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr2:191696381..191696384, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pneumocyte | 1.53e-44 | 3 |
mucus secreting cell | 5.05e-34 | 1 |
seromucus secreting cell | 9.07e-18 | 2 |
epithelial cell of tracheobronchial tree | 1.22e-15 | 9 |
epithelial cell of lower respiratory tract | 1.22e-15 | 9 |
respiratory epithelial cell | 3.75e-11 | 13 |
epithelial cell of lung | 6.15e-08 | 19 |
endo-epithelial cell | 7.76e-08 | 42 |
epithelial cell of uterus | 7.17e-07 | 6 |
stromal cell of endometrium | 7.17e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 3.96e-66 | 2 |
alveolar duct | 3.96e-66 | 2 |
bronchiole | 3.96e-66 | 2 |
pulmonary alveolus epithelium | 1.53e-44 | 3 |
alveolus | 1.53e-44 | 3 |
pulmonary lobule | 1.53e-44 | 3 |
lobule | 1.53e-44 | 3 |
alveolus of lung | 1.53e-44 | 3 |
alveolar system | 1.53e-44 | 3 |
pulmonary acinus | 1.53e-44 | 3 |
alveolar sac | 1.53e-44 | 3 |
alveolar wall | 1.53e-44 | 3 |
tracheobronchial tree | 8.46e-10 | 15 |
lower respiratory tract | 8.46e-10 | 15 |
duct | 6.15e-08 | 19 |
respiratory tract epithelium | 6.15e-08 | 19 |
lung epithelium | 6.15e-08 | 19 |
lung | 5.57e-07 | 22 |
simple squamous epithelium | 5.57e-07 | 22 |
respiratory tube | 5.57e-07 | 22 |
respiration organ | 5.57e-07 | 22 |
pair of lungs | 5.57e-07 | 22 |
lung primordium | 5.57e-07 | 22 |
lung bud | 5.57e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
lung adenocarcinoma | 3.96e-66 | 2 |
mucinous adenocarcinoma | 5.05e-34 | 1 |
non-small cell lung carcinoma | 3.11e-27 | 5 |
bronchus cancer | 8.62e-20 | 7 |
bronchogenic carcinoma | 8.62e-20 | 7 |
lung carcinoma | 1.22e-15 | 9 |
lung cancer | 8.46e-10 | 15 |
respiratory system cancer | 3.01e-09 | 16 |
carcinoma | 3.20e-08 | 106 |
female reproductive endometrioid cancer | 7.17e-07 | 6 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.