FFCP PHASE1:Hg19::chr2:160654889..160654912,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=9936|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=30843|TSSclassifier=W|UniProt=B4E2T9,Q8IX05|association_with_transcript=-123bp_to_NM_001198763,NM_001198764,NM_014880,uc002uba.2,uc010zco.1_5end|coexpression_cluster_id=C5|description=CAGE_peak_3_at_CD302_5end|id=chr2:160654889..160654912,-|ontology_enrichment_celltype=CL:0002194!1.59e-40!63;CL:0000576!1.59e-40!63;CL:0000040!1.59e-40!63;CL:0000559!1.59e-40!63;CL:0002009!4.74e-40!65;CL:0000766!1.13e-39!76;CL:0002057!7.45e-39!42;CL:0000557!1.31e-36!71;CL:0000860!4.66e-35!45;CL:0000839!2.85e-34!70;CL:0000763!7.71e-29!112;CL:0000049!7.71e-29!112;CL:0000738!1.15e-17!140;CL:0002087!2.68e-17!119;CL:0000037!7.42e-15!172;CL:0000566!7.42e-15!172;CL:0002032!3.41e-14!165;CL:0000837!3.41e-14!165;CL:0002031!7.30e-14!124;CL:0000988!9.47e-13!182;CL:0002320!2.22e-11!365;CL:0000134!1.38e-10!358;CL:0002393!9.19e-10!9;CL:0002397!9.19e-10!9;CL:0000219!1.56e-08!390|ontology_enrichment_celltype_v019=CL:0000860;1.02e-58;33!CL:0002057;1.02e-58;33!CL:0000473;1.68e-51;39!CL:0000234;1.68e-51;39!CL:0000576;7.30e-50;48!CL:0000766;1.31e-33;69!CL:0000763;3.04e-16;100!CL:0002393;1.75e-13;6!CL:0002397;1.75e-13;6!CL:0002087;4.93e-13;104!CL:0000738;3.02e-09;136!CL:0000988;5.73e-07;177|ontology_enrichment_celltype_v019_2=CL:0000473,1.97e-84,48;CL:0000234,1.97e-84,48;CL:0000860,3.36e-82,42;CL:0002057,3.36e-82,42;CL:0002194,1.53e-73,59;CL:0000576,1.53e-73,59;CL:0000040,1.53e-73,59;CL:0000559,1.53e-73,59;CL:0002009,7.53e-71,61;CL:0000766,2.10e-69,72;CL:0000557,1.61e-67,67;CL:0000839,8.08e-65,66;CL:0000763,1.56e-45,108;CL:0000049,1.56e-45,108;CL:0002087,1.65e-37,115;CL:0000738,5.49e-36,136;CL:0002031,1.78e-31,120;CL:0000037,8.59e-29,168;CL:0002032,3.57e-27,161;CL:0000837,3.57e-27,161;CL:0000988,8.71e-27,177;CL:0002393,7.08e-17,9;CL:0002397,7.08e-17,9;CL:0000134,1.25e-12,354;CL:0002320,3.67e-12,361;CL:0000219,1.63e-10,386;CL:0000048,1.65e-08,427;CL:0000723,3.10e-08,433;CL:0000034,7.03e-08,441|ontology_enrichment_development_v019=CL:0002057;1.95e-57;42!CL:0000049;7.34e-14;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!1.75e-32!102;UBERON:0003061!1.75e-32!102;UBERON:0002405!7.49e-32!115;UBERON:0002371!3.73e-31!80;UBERON:0002193!1.86e-30!112;UBERON:0001474!1.91e-30!86;UBERON:0004765!5.37e-28!101;UBERON:0001434!5.37e-28!101;UBERON:0002204!1.36e-15!167;UBERON:0002384!1.33e-10!375;UBERON:0003081!2.08e-08!216;UBERON:0000926!1.20e-07!448;UBERON:0004120!1.20e-07!448;UBERON:0006603!1.20e-07!448|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.93e-58,76;UBERON:0002390,7.81e-54,98;UBERON:0003061,7.81e-54,98;UBERON:0001474,1.74e-53,82;UBERON:0002405,1.21e-48,93;UBERON:0002193,6.64e-48,108;UBERON:0004765,6.80e-48,90;UBERON:0001434,6.52e-47,100;UBERON:0002204,4.53e-24,167;UBERON:0003081,1.31e-20,203;UBERON:0000926,7.29e-12,315;UBERON:0004120,7.29e-12,315;UBERON:0006603,7.29e-12,315;UBERON:0002384,1.60e-11,371;UBERON:0000923,8.18e-07,560;UBERON:0010316,8.18e-07,560;UBERON:0005291,8.18e-07,560;UBERON:0006598,8.18e-07,560;UBERON:0010317,8.18e-07,560;UBERON:0002532,8.18e-07,560|phase1_expression=0.908391896352783,0.428201047781966,0.704772020479856,1.0007329835313,0.893922188854576,0.872338524100369,0,0.631719873426831,0.261185628199839,0,0,0,0,0.123766352960047,0.662794751455832,0,0,0,0,0,0,0,0,0,0,0,0,0,2.36018566109342,2.30297638858328,0.619264493264304,0,0,0,0,0,0,2.21598163412751,1.40381113229099,1.08505435357926,1.79132379391939,0.971680998056939,2.06060454107349,0.726991193897824,0.377875943688809,0.970336244751265,1.85943229524548,2.87817521615278,1.54853185447552,2.01384674625505,1.2808035326455,1.41889337933151,2.06847408441971,1.93645405075148,4.06279459783025,0.752969358170419,0.272906150057846,1.34834090667051,3.06083892370903,2.24650318953266,1.91801137739712,1.64925650093358,1.79517291859469,0,7.54544020434318,3.97169657283798,5.60540024096017,1.7587406567972,1.5644487552606,1.73751075764093,7.26479403160043,4.41933163185078,5.37986058649504,2.74631872205524,2.76385589954557,0.628975936525128,1.23561494261145,1.95229960693958,4.66104201421532,0.570025487482497,3.38158351238453,1.64397738388171,0,0,0,0,0,0,0,0,0,0,0,0,0,0.790152254325231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637130828648193,0,0,0.301150238155546,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0.144846518960824,0,0,0,0,0,0.261958150995425,0,0,0.649094787309367,0.174129737299267,0.398873881556595,0,0,0,0,0,0,0,0,0,0.208994966536811,0,0.35576626268671,0,0,0,0.24406205754817,0,0,0,0.22452937262617,0,0,0,0,0,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0.204154171254893,0,0.206651562351531,0,0.494533858557114,0,0,0,0,0,0,0,1.35214253015937,0,0,0,0.211931901159562,0,0.103052529238439,0.257640540045629,0,0,0,0,0,0.323292113637624,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.0132552232746,22.605025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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=9936 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30843 | |||
|TSSclassifier=W | |||
|UniProt=B4E2T9,Q8IX05 | |||
|association_with_transcript=-123bp_to_NM_001198763,NM_001198764,NM_014880,uc002uba.2,uc010zco.1_5end | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_3_at_CD302_5end | |||
|id=chr2:160654889..160654912,- | |||
|ontology_enrichment_celltype=CL:0002194!1.59e-40!63;CL:0000576!1.59e-40!63;CL:0000040!1.59e-40!63;CL:0000559!1.59e-40!63;CL:0002009!4.74e-40!65;CL:0000766!1.13e-39!76;CL:0002057!7.45e-39!42;CL:0000557!1.31e-36!71;CL:0000860!4.66e-35!45;CL:0000839!2.85e-34!70;CL:0000763!7.71e-29!112;CL:0000049!7.71e-29!112;CL:0000738!1.15e-17!140;CL:0002087!2.68e-17!119;CL:0000037!7.42e-15!172;CL:0000566!7.42e-15!172;CL:0002032!3.41e-14!165;CL:0000837!3.41e-14!165;CL:0002031!7.30e-14!124;CL:0000988!9.47e-13!182;CL:0002320!2.22e-11!365;CL:0000134!1.38e-10!358;CL:0002393!9.19e-10!9;CL:0002397!9.19e-10!9;CL:0000219!1.56e-08!390 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.02e-58;33!CL:0002057;1.02e-58;33!CL:0000473;1.68e-51;39!CL:0000234;1.68e-51;39!CL:0000576;7.30e-50;48!CL:0000766;1.31e-33;69!CL:0000763;3.04e-16;100!CL:0002393;1.75e-13;6!CL:0002397;1.75e-13;6!CL:0002087;4.93e-13;104!CL:0000738;3.02e-09;136!CL:0000988;5.73e-07;177 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.97e-84,48;CL:0000234,1.97e-84,48;CL:0000860,3.36e-82,42;CL:0002057,3.36e-82,42;CL:0002194,1.53e-73,59;CL:0000576,1.53e-73,59;CL:0000040,1.53e-73,59;CL:0000559,1.53e-73,59;CL:0002009,7.53e-71,61;CL:0000766,2.10e-69,72;CL:0000557,1.61e-67,67;CL:0000839,8.08e-65,66;CL:0000763,1.56e-45,108;CL:0000049,1.56e-45,108;CL:0002087,1.65e-37,115;CL:0000738,5.49e-36,136;CL:0002031,1.78e-31,120;CL:0000037,8.59e-29,168;CL:0002032,3.57e-27,161;CL:0000837,3.57e-27,161;CL:0000988,8.71e-27,177;CL:0002393,7.08e-17,9;CL:0002397,7.08e-17,9;CL:0000134,1.25e-12,354;CL:0002320,3.67e-12,361;CL:0000219,1.63e-10,386;CL:0000048,1.65e-08,427;CL:0000723,3.10e-08,433;CL:0000034,7.03e-08,441 | |||
|ontology_enrichment_development_v019=CL:0002057;1.95e-57;42!CL:0000049;7.34e-14;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.75e-32!102;UBERON:0003061!1.75e-32!102;UBERON:0002405!7.49e-32!115;UBERON:0002371!3.73e-31!80;UBERON:0002193!1.86e-30!112;UBERON:0001474!1.91e-30!86;UBERON:0004765!5.37e-28!101;UBERON:0001434!5.37e-28!101;UBERON:0002204!1.36e-15!167;UBERON:0002384!1.33e-10!375;UBERON:0003081!2.08e-08!216;UBERON:0000926!1.20e-07!448;UBERON:0004120!1.20e-07!448;UBERON:0006603!1.20e-07!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.93e-58,76;UBERON:0002390,7.81e-54,98;UBERON:0003061,7.81e-54,98;UBERON:0001474,1.74e-53,82;UBERON:0002405,1.21e-48,93;UBERON:0002193,6.64e-48,108;UBERON:0004765,6.80e-48,90;UBERON:0001434,6.52e-47,100;UBERON:0002204,4.53e-24,167;UBERON:0003081,1.31e-20,203;UBERON:0000926,7.29e-12,315;UBERON:0004120,7.29e-12,315;UBERON:0006603,7.29e-12,315;UBERON:0002384,1.60e-11,371;UBERON:0000923,8.18e-07,560;UBERON:0010316,8.18e-07,560;UBERON:0005291,8.18e-07,560;UBERON:0006598,8.18e-07,560;UBERON:0010317,8.18e-07,560;UBERON:0002532,8.18e-07,560 | |||
|phase1_expression=0.908391896352783,0.428201047781966,0.704772020479856,1.0007329835313,0.893922188854576,0.872338524100369,0,0.631719873426831,0.261185628199839,0,0,0,0,0.123766352960047,0.662794751455832,0,0,0,0,0,0,0,0,0,0,0,0,0,2.36018566109342,2.30297638858328,0.619264493264304,0,0,0,0,0,0,2.21598163412751,1.40381113229099,1.08505435357926,1.79132379391939,0.971680998056939,2.06060454107349,0.726991193897824,0.377875943688809,0.970336244751265,1.85943229524548,2.87817521615278,1.54853185447552,2.01384674625505,1.2808035326455,1.41889337933151,2.06847408441971,1.93645405075148,4.06279459783025,0.752969358170419,0.272906150057846,1.34834090667051,3.06083892370903,2.24650318953266,1.91801137739712,1.64925650093358,1.79517291859469,0,7.54544020434318,3.97169657283798,5.60540024096017,1.7587406567972,1.5644487552606,1.73751075764093,7.26479403160043,4.41933163185078,5.37986058649504,2.74631872205524,2.76385589954557,0.628975936525128,1.23561494261145,1.95229960693958,4.66104201421532,0.570025487482497,3.38158351238453,1.64397738388171,0,0,0,0,0,0,0,0,0,0,0,0,0,0.790152254325231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637130828648193,0,0,0.301150238155546,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0.144846518960824,0,0,0,0,0,0.261958150995425,0,0,0.649094787309367,0.174129737299267,0.398873881556595,0,0,0,0,0,0,0,0,0,0.208994966536811,0,0.35576626268671,0,0,0,0.24406205754817,0,0,0,0.22452937262617,0,0,0,0,0,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0.204154171254893,0,0.206651562351531,0,0.494533858557114,0,0,0,0,0,0,0,1.35214253015937,0,0,0,0.211931901159562,0,0.103052529238439,0.257640540045629,0,0,0,0,0,0.323292113637624,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.0132552232746,22.6050259835854,17.7236972004421,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0,0,0,0.492434012174795,0.702012795417713,1.63494278517601,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0.129271715757778,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0.355391948742546,0,0.301439377059586,0,0,0,1.00451418286425,2.10833939483032,0,0,0,0,0,0,0,0.197030760201927,0,0,0,0,0,0,0,0.749007023947182,0,0.828831026872071,0.49076596687656,0,0.271265023699736,0.207970861530807,0,0,0,0.300946099727719,0,0,0,0,0.173767228936166,0,0,2.27444828735176,2.37285620900479,0.74709290462411,0,0,0,0.496215615637554,0,0,0.128139149255701,0,0,0,0,0,0,0,0,0,0.200506470303285,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75169719801128,0.0915694648183434,0.082509499920588,0,0,0,0,0,0,0,0,0.145016693914229,0,0,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.359744915166629,0,0,0,0,0,0,0,0,0.136499911407986,0.141405431953713,0,0,0,0,0,0.655894752046633,0.202910376962704,0,0,0,0,0.35667105148125,0,1.26664581178598,0.329294892959902,0,0,0,0,0,2.82431402330337,0,0,0,0,0,0,0.569647187174163,0.476463550915578,0.822724546172388,0,0.540031437238115,2.37937552888281,0,0,0,0,0,0,0,0.199579371432817,0,0,0,0.280797178113459,0,0,0,0,0,0.201799707191048,0.425846237690326,0,0.307240764308458,0.223676107892416,0.500547425135725,0.19538809540204,0,0,0,0,0,0,0.439524537815682,0,0,0,0,0.296964680832639,0,0,0,0.445234820091624,0,0,0,0,0,0,0,0.311039587661807,0.179736702294654,0,0.511572370226872,0.493217028184668,0,0,0.969332746095218,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0.332423363800313,0,0,0,0,0,0,0,0,0,0,0.353830258013357,0,0,0,0,0.134802265961354,0.802577647298789,0,0,0,0,0,0,0,0.505492637027904,0,0.103688191397247,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.290967049465258,0,0.225980740780532,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0.235694034616795,0.135904206073614,0,0,0,0,0,3.83239764200917,0,0,0,0,0.717873024576814,0,0,0.223171457441873,0.201550417460179,0,0,0.157566364614447,0.164831716762333,0.13480708770837,0,0,0,0,0,0.137539436597234,0,0.2249738915515,0,0.0607495566580247,0,0.157611414598396,0.314727528809989,0,0,0,0,0.662091970365432,0,0,0,0.326587360109409,0,0,0,0,16.7069546393014,2.65013777824443,0,0,0,0,1.60181118851542,4.71612915298998,5.79934677486074,0.992332043623902,0,0.121792598380896,0,0,0.5013797880454,0.306345576763462,0.655745261419609,0,0,0,0.1251909307065,0,0,0.18628920882415,0.276697269872462,0,0,0,0,0,0,0,0,0,0,0.251567901752575,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0.464033759878494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303859956177382,0,0.194860308839388,0,0,0,0,0,0,0,0,0,0.736423801007363,0,0.622077260032973,0,0.107824811396682,0,0,0,0,0,0,0,0,0,0.352675943690684,0,0,0,0,0,0.252071696221718,0.138314504928436,0,0,0,0,0,0,0,0,0,0.601682626794058,0,0,0,0.327543835020193,0,0,0,0,0,0,0,0,0,0.127762427639595,0.535701835878287,0,0,0,0,0,0.514464028312255,0,0.131545547125698,0,0,0.549451649953598,0,0,0,0,0,0.571812353413251,0,0,0,0,0,0,0,0.430227358820278,0.354996002191696,0.170426809518315,0,0,0.31020638566432,0,0,0,0,0,0.205325613712494,0,0.485710993059139,0,0,0,0,0.109940516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| |||
|short_description=p3@CD302 | |||
}} |
Revision as of 14:18, 12 September 2013
Short description: | p3@CD302 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_CD302_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | -123bp_to_NM_001198763, NM_001198764, NM_014880, uc002uba.2, uc010zco.1_5end |
EntrezGene: | CD302 |
HGNC: | 30843 |
UniProt: | B4E2T9Q8IX05 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.97e-84 | 48 |
phagocyte | 1.97e-84 | 48 |
classical monocyte | 3.36e-82 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.36e-82 | 42 |
monopoietic cell | 1.53e-73 | 59 |
monocyte | 1.53e-73 | 59 |
monoblast | 1.53e-73 | 59 |
promonocyte | 1.53e-73 | 59 |
macrophage dendritic cell progenitor | 7.53e-71 | 61 |
myeloid leukocyte | 2.10e-69 | 72 |
granulocyte monocyte progenitor cell | 1.61e-67 | 67 |
myeloid lineage restricted progenitor cell | 8.08e-65 | 66 |
myeloid cell | 1.56e-45 | 108 |
common myeloid progenitor | 1.56e-45 | 108 |
nongranular leukocyte | 1.65e-37 | 115 |
leukocyte | 5.49e-36 | 136 |
hematopoietic lineage restricted progenitor cell | 1.78e-31 | 120 |
hematopoietic stem cell | 8.59e-29 | 168 |
hematopoietic oligopotent progenitor cell | 3.57e-27 | 161 |
hematopoietic multipotent progenitor cell | 3.57e-27 | 161 |
hematopoietic cell | 8.71e-27 | 177 |
intermediate monocyte | 7.08e-17 | 9 |
CD14-positive, CD16-positive monocyte | 7.08e-17 | 9 |
mesenchymal cell | 1.25e-12 | 354 |
connective tissue cell | 3.67e-12 | 361 |
motile cell | 1.63e-10 | 386 |
multi fate stem cell | 1.65e-08 | 427 |
somatic stem cell | 3.10e-08 | 433 |
stem cell | 7.03e-08 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.93e-58 | 76 |
hematopoietic system | 7.81e-54 | 98 |
blood island | 7.81e-54 | 98 |
bone element | 1.74e-53 | 82 |
immune system | 1.21e-48 | 93 |
hemolymphoid system | 6.64e-48 | 108 |
skeletal element | 6.80e-48 | 90 |
skeletal system | 6.52e-47 | 100 |
musculoskeletal system | 4.53e-24 | 167 |
lateral plate mesoderm | 1.31e-20 | 203 |
mesoderm | 7.29e-12 | 315 |
mesoderm-derived structure | 7.29e-12 | 315 |
presumptive mesoderm | 7.29e-12 | 315 |
connective tissue | 1.60e-11 | 371 |
germ layer | 8.18e-07 | 560 |
germ layer / neural crest | 8.18e-07 | 560 |
embryonic tissue | 8.18e-07 | 560 |
presumptive structure | 8.18e-07 | 560 |
germ layer / neural crest derived structure | 8.18e-07 | 560 |
epiblast (generic) | 8.18e-07 | 560 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.