FFCP PHASE1:Hg19::chr2:128433361..128433386,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=55679|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=16084|TSSclassifier=S|UniProt=F5H6E6|association_with_transcript=0bp_to_ENST00000544917_5end|description=CAGE_peak_6_at_LIMS2_5end|id=chr2:128433361..128433386,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!7.00e-31!115;UBERON:0001049!5.89e-15!57;UBERON:0005068!5.89e-15!57;UBERON:0006241!5.89e-15!57;UBERON:0007135!5.89e-15!57;UBERON:0000955!3.63e-13!69;UBERON:0006238!3.63e-13!69;UBERON:0001017!3.73e-13!82;UBERON:0002616!7.00e-13!59;UBERON:0003080!1.47e-12!42;UBERON:0005743!1.50e-12!86;UBERON:0002020!3.30e-12!34;UBERON:0003528!3.30e-12!34;UBERON:0001893!3.32e-12!34;UBERON:0002791!5.69e-12!33;UBERON:0002780!5.94e-12!41;UBERON:0001890!5.94e-12!41;UBERON:0006240!5.94e-12!41;UBERON:0001869!1.80e-11!32;UBERON:0004111!5.97e-11!241;UBERON:0000025!7.37e-11!194;UBERON:0003075!8.27e-11!86;UBERON:0007284!8.27e-11!86;UBERON:0002346!2.43e-10!90;UBERON:0002619!4.11e-10!22;UBERON:0000073!4.97e-10!94;UBERON:0001016!4.97e-10!94;UBERON:0000477!5.78e-10!286;UBERON:0000468!4.71e-09!659;UBERON:0001950!7.42e-09!20;UBERON:0000956!1.13e-08!25;UBERON:0000203!1.13e-08!25;UBERON:0000475!4.02e-08!365;UBERON:0000062!8.28e-08!511;UBERON:0000467!2.80e-07!625;UBERON:0000480!3.63e-07!626|ontology_enrichment_uberon_v019=UBERON:0007023;6.80e-07;114|ontology_enrichment_uberon_v019_2=UBERON:0007023,4.25e-25,114;UBERON:0001049,2.38e-07,56;UBERON:0005068,2.38e-07,56;UBERON:0006241,2.38e-07,56;UBERON:0007135,2.38e-07,56;UBERON:0000073,2.48e-07,53;UBERON:0002616,2.48e-07,53;UBERON:0002780,2.72e-07,41;UBERON:0001890,2.72e-07,41;UBERON:0003080,2.72e-07,41;UBERON:0006240,2.72e-07,41;UBERON:0000955,4.10e-07,68;UBERON:0006238,4.10e-07,68;UBERON:0001893,7.12e-07,34|phase1_expression=0.726713517082227,1.49870366723688,2.39622486963151,0,3.5756887554183,1.74467704820074,0,0,0,0.245733936501509,0,0,0,0,0,0,0.602694528023977,0,0,0,0,0.313454721478088,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10799081706375,0.401088894940283,0.651032612147555,0,0,0,0,0,0,0.232429036905685,0,0.309706370895104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0.56738522469114,1.24564449799115,0,0,0,0,0.368277635987565,0,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0843174571537,0,1.01392563272577,0,0.973269740605272,0,0,0,1.76821751921912,0,0,0,0,0,0,0,0,0.39752481473341,0,0.347140501607594,0,0.838998872419812,0.825354125820202,0,3.35941786920128,1.77883131343355,1.00416183829401,0.402829317109147,0.760272105718513,0.488124115096339,0.735326160691737,0.81014194788176,1.25019619597712,2.02076435363553,0.900891843866578,0,0,0,0,0,0,3.97577561356255,0.886413581652058,2.51577443545116,3.15520282823695,0.354668382198357,0,3.20246987189115,1.72667283892012,0,0.134710672069688,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.718618141816238,0.168336113954066,0,0,0.438977620880838,0.612975591598039,0.45071417671979,0,3.04962380671065,1.70845911054854,0.423863802319124,0.600182192168805,0.515262646192195,8.50213782150576,1.30281799432113,3.03797398034279,1.26668106709558,2.52433774244115,0.644349290496095,2.90962902273861,3.90510551768276,1.10827308050404,0.339121184620975,0,0,0,0,0,0,0,0,0,0,3.21620469096443,0,0,0,0,0,0,0.110293972732394,0,0,0.134831308160164,0.196221465125346,0,0.738155454624648,2.80483547606892,0,1.47008711385542,1.26755034821831,1.96565443335525,0.590789906681404,0,0,0,0.109750285408626,0,0,0,0,0,0,0.115930404975077,0,0.577465791044295,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224262168690721,0,0,1.29271715757778,3.57656445851882,0,2.6593811658487,0,0,0,0,0.428933980974443,0,0,0,0.710783897485092,0,0,0.871533458600294,0.499864955910285,0,0,0,0.239624855491583,2.29723871668228,0,1.15825045334063,0,0.537182889719687,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0,0,0,8.52680532276309,3.03329280955175,6.30809660135739,3.27995961979597,0,0,0,0,0.184369168541703,0.60818530127658,0,0,0,0,0,0,0,0,2.23297027036899,14.2719635157898,1.96462066103151,2.43464383585832,0.511707249066704,2.2519548960105,2.96836132889982,0.154209693802656,0,0,0,0,0,0,0,0,0.364182336013434,0.655622074797121,0,0.0770153371044148,0,0,0.105551628892876,0,1.02056223165909,0,6.16909010761157,0,0,0,0,0.223874754722178,0,0,0,0,0,1.13345112812495,0.366277859273374,0.247528499761764,0,0,1.6068392984416,0,0,0,0.137836572484531,0,0,0,0.0890320356467374,0,0,0.127612712494584,0,0,3.77774816196768,0,0,0,0,0,0,0,0.949138274156178,0.38126038784765,0,0,0,0,0.179872457583315,0.274537029736055,0.117812402345686,0.202182481573316,0,0,0,0.487426979262569,0,0.136499911407986,0,0,0,0,0.876901770507525,0,0,0.405820753925408,0.3098234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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=55679 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=16084 | |||
|TSSclassifier=S | |||
|UniProt=F5H6E6 | |||
|association_with_transcript=0bp_to_ENST00000544917_5end | |||
|description=CAGE_peak_6_at_LIMS2_5end | |||
|id=chr2:128433361..128433386,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.00e-31!115;UBERON:0001049!5.89e-15!57;UBERON:0005068!5.89e-15!57;UBERON:0006241!5.89e-15!57;UBERON:0007135!5.89e-15!57;UBERON:0000955!3.63e-13!69;UBERON:0006238!3.63e-13!69;UBERON:0001017!3.73e-13!82;UBERON:0002616!7.00e-13!59;UBERON:0003080!1.47e-12!42;UBERON:0005743!1.50e-12!86;UBERON:0002020!3.30e-12!34;UBERON:0003528!3.30e-12!34;UBERON:0001893!3.32e-12!34;UBERON:0002791!5.69e-12!33;UBERON:0002780!5.94e-12!41;UBERON:0001890!5.94e-12!41;UBERON:0006240!5.94e-12!41;UBERON:0001869!1.80e-11!32;UBERON:0004111!5.97e-11!241;UBERON:0000025!7.37e-11!194;UBERON:0003075!8.27e-11!86;UBERON:0007284!8.27e-11!86;UBERON:0002346!2.43e-10!90;UBERON:0002619!4.11e-10!22;UBERON:0000073!4.97e-10!94;UBERON:0001016!4.97e-10!94;UBERON:0000477!5.78e-10!286;UBERON:0000468!4.71e-09!659;UBERON:0001950!7.42e-09!20;UBERON:0000956!1.13e-08!25;UBERON:0000203!1.13e-08!25;UBERON:0000475!4.02e-08!365;UBERON:0000062!8.28e-08!511;UBERON:0000467!2.80e-07!625;UBERON:0000480!3.63e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;6.80e-07;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,4.25e-25,114;UBERON:0001049,2.38e-07,56;UBERON:0005068,2.38e-07,56;UBERON:0006241,2.38e-07,56;UBERON:0007135,2.38e-07,56;UBERON:0000073,2.48e-07,53;UBERON:0002616,2.48e-07,53;UBERON:0002780,2.72e-07,41;UBERON:0001890,2.72e-07,41;UBERON:0003080,2.72e-07,41;UBERON:0006240,2.72e-07,41;UBERON:0000955,4.10e-07,68;UBERON:0006238,4.10e-07,68;UBERON:0001893,7.12e-07,34 | |||
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| |||
|short_description=p6@LIMS2 | |||
}} |
Revision as of 13:25, 12 September 2013
Short description: | p6@LIMS2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_LIMS2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000544917_5end |
EntrezGene: | LIMS2 |
HGNC: | 16084 |
UniProt: | F5H6E6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 4.25e-25 | 114 |
neural tube | 2.38e-07 | 56 |
neural rod | 2.38e-07 | 56 |
future spinal cord | 2.38e-07 | 56 |
neural keel | 2.38e-07 | 56 |
regional part of nervous system | 2.48e-07 | 53 |
regional part of brain | 2.48e-07 | 53 |
regional part of forebrain | 2.72e-07 | 41 |
forebrain | 2.72e-07 | 41 |
anterior neural tube | 2.72e-07 | 41 |
future forebrain | 2.72e-07 | 41 |
brain | 4.10e-07 | 68 |
future brain | 4.10e-07 | 68 |
telencephalon | 7.12e-07 | 34 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.