FFCP PHASE1:Hg19::chr2:109301897..109301905,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=|TSSclassifier=W|UniProt=|association_with_transcript=-72bp_to_uc002tel.2_5end|coexpression_cluster_id=C469|description=CAGE_peak_1_at_uc002tel.2_5end|id=chr2:109301897..109301905,+|ontology_enrichment_celltype=CL:0002057!5.86e-20!42;CL:0002194!1.73e-19!63;CL:0000576!1.73e-19!63;CL:0000040!1.73e-19!63;CL:0000559!1.73e-19!63;CL:0000839!3.68e-19!70;CL:0002009!3.21e-18!65;CL:0000860!1.94e-17!45;CL:0000557!6.48e-17!71;CL:0000766!3.87e-16!76;CL:0000763!1.41e-11!112;CL:0000049!1.41e-11!112;CL:0002087!8.45e-11!119;CL:0002031!2.93e-10!124;CL:0000738!2.74e-08!140;CL:0002032!5.97e-08!165;CL:0000837!5.97e-08!165;CL:0000037!2.87e-07!172;CL:0000566!2.87e-07!172|ontology_enrichment_celltype_v019=CL:0000860;1.48e-46;33!CL:0002057;1.48e-46;33!CL:0000473;5.36e-39;39!CL:0000234;5.36e-39;39!CL:0000576;8.49e-25;48!CL:0000766;4.33e-16;69!CL:0000763;7.05e-09;100!CL:0000738;3.11e-07;136|ontology_enrichment_celltype_v019_2=CL:0000473,1.74e-45,48;CL:0000234,1.74e-45,48;CL:0000860,5.41e-43,42;CL:0002057,5.41e-43,42;CL:0002194,1.42e-42,59;CL:0000576,1.42e-42,59;CL:0000040,1.42e-42,59;CL:0000559,1.42e-42,59;CL:0002009,5.06e-41,61;CL:0000839,1.50e-37,66;CL:0000766,2.66e-37,72;CL:0000557,6.44e-37,67;CL:0000763,4.24e-23,108;CL:0000049,4.24e-23,108;CL:0002087,2.27e-19,115;CL:0002031,2.41e-18,120;CL:0000738,3.21e-17,136;CL:0002032,1.07e-13,161;CL:0000837,1.07e-13,161;CL:0000037,6.75e-13,168;CL:0000988,5.79e-12,177;CL:0000134,1.63e-07,354;CL:0002320,3.06e-07,361;CL:0000048,4.90e-07,427;CL:0000219,6.22e-07,386;CL:0000723,7.73e-07,433|ontology_enrichment_development_v019=CL:0002057;1.33e-28;42!CL:0000049;1.53e-09;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001474!2.27e-13!86;UBERON:0002371!2.44e-13!80;UBERON:0004765!4.23e-12!101;UBERON:0001434!4.23e-12!101;UBERON:0002193!2.48e-10!112;UBERON:0002405!4.40e-10!115;UBERON:0002390!1.26e-09!102;UBERON:0003061!1.26e-09!102;UBERON:0002204!1.95e-09!167|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,5.86e-32,76;UBERON:0001474,2.99e-29,82;UBERON:0004765,3.39e-26,90;UBERON:0002390,5.84e-26,98;UBERON:0003061,5.84e-26,98;UBERON:0002405,3.48e-25,93;UBERON:0001434,4.65e-23,100;UBERON:0002193,4.67e-23,108;UBERON:0002204,1.10e-15,167;UBERON:0003081,1.80e-15,203;UBERON:0000926,2.60e-09,315;UBERON:0004120,2.60e-09,315;UBERON:0006603,2.60e-09,315;UBERON:0002384,7.26e-07,371|phase1_expression=0,0.214100523890983,0.422863212287913,0,0,0,0,0,0.261185628199839,0,0,0,0,0.123766352960047,0,2.6893005858071,0.602694528023977,1.46062018077475,0.975865597581014,0,0,0.313454721478088,1.14494394852423,0.273748850145768,0.125542639594803,0.0764134057479513,0.0821005894499457,0.0787107813136792,0,0,0.154816123316076,0,0,0,0.0774672005803016,0,0,0,0,0.217010870715852,0.223915474239924,0.32389366601898,0,1.16318591023652,0.377875943688809,1.69808842831471,0.929716147622738,1.23350366406548,1.23882548358041,0.863077176966451,2.0492856522328,1.41889337933151,1.37898272294647,0.645484683583826,2.70852973188684,2.44715041405386,1.36453075028923,2.47195832889593,3.97909060082173,2.24650318953266,3.83602275479425,0,0.598390972864896,0.852449501065388,2.90209238628584,1.70215567407342,1.24564449799115,2.00998932205395,3.12889751052121,0.65156653411535,0.605399502633369,0.736555271975129,0.949387162322653,0,0.425208599930087,0.209658645508376,0.22465726229299,0.150176892841506,0,0.570025487482497,1.19350006319454,0.365328307529268,0,0,0,0.426730222566507,0,0.574752439954483,0,0,0,0,0,0,0,0,0.196709770113833,0,0.822405995998037,0,0.32592226663359,0,0,0.334231370655521,0,0,0,0.896639238079726,0.520237390239513,0.822189523018381,0.276350017785848,0,0,0,0,0.226618685395132,0,0,0.759059076058509,0,0,0,0,0,0,0.236777252044017,0,0,0.267440195783507,0,0,0,0,0.361439152384566,0,0.434539556882471,0,0,0.283604451492204,0,0.175669571386252,0.0654895377488563,0,0,1.29818957461873,0.522389211897802,1.99436940778298,0,0,0,0,0,0,0,0,0,0.208994966536811,0.258416759169329,0.35576626268671,0.33472061276467,0,0.760272105718513,0.488124115096339,0,0,0.17859945656816,0,0,0,0,0,0,0,0,0.993943903390637,0.633152558322899,0,0,0.709336764396714,0,0,0.49333509683432,0,0,0,0,0,0,0.624320153660641,0,0.149448680551801,0,0.161872944368132,0,0,0,0,2.37600571456411,0.247266929278557,0,0,0.168336113954066,0,0,0,0.30648779579902,0,0.680593098960126,0,0.427114777637135,0,0,0,0,0,0,0,0,0,0,0,0.10075209822764,0,0.57978255948989,0.272746120590835,0,0.121973706129595,0,0.116193942869518,0.10366105501537,0.252320850875628,0.36497735907583,0,0,0,0,0,0.236613600079688,0,0.241011029883482,0.110293972732394,0,0.71181185733329,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0.171567810298526,0.219500570817251,0,0.201057944823262,0,0.325808305310325,0,0,0,0,0,0.462985512576611,0.570762456703795,0,0,0.984868024349589,0.468008530278475,0.445893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29388577,0,0.179650404213174,0,0,0.813792356631477,0,0.201273793591026,0|short_description=p1@uc002tel.2}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=-72bp_to_uc002tel.2_5end | |||
|coexpression_cluster_id=C469 | |||
|description=CAGE_peak_1_at_uc002tel.2_5end | |||
|id=chr2:109301897..109301905,+ | |||
|ontology_enrichment_celltype=CL:0002057!5.86e-20!42;CL:0002194!1.73e-19!63;CL:0000576!1.73e-19!63;CL:0000040!1.73e-19!63;CL:0000559!1.73e-19!63;CL:0000839!3.68e-19!70;CL:0002009!3.21e-18!65;CL:0000860!1.94e-17!45;CL:0000557!6.48e-17!71;CL:0000766!3.87e-16!76;CL:0000763!1.41e-11!112;CL:0000049!1.41e-11!112;CL:0002087!8.45e-11!119;CL:0002031!2.93e-10!124;CL:0000738!2.74e-08!140;CL:0002032!5.97e-08!165;CL:0000837!5.97e-08!165;CL:0000037!2.87e-07!172;CL:0000566!2.87e-07!172 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.48e-46;33!CL:0002057;1.48e-46;33!CL:0000473;5.36e-39;39!CL:0000234;5.36e-39;39!CL:0000576;8.49e-25;48!CL:0000766;4.33e-16;69!CL:0000763;7.05e-09;100!CL:0000738;3.11e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.74e-45,48;CL:0000234,1.74e-45,48;CL:0000860,5.41e-43,42;CL:0002057,5.41e-43,42;CL:0002194,1.42e-42,59;CL:0000576,1.42e-42,59;CL:0000040,1.42e-42,59;CL:0000559,1.42e-42,59;CL:0002009,5.06e-41,61;CL:0000839,1.50e-37,66;CL:0000766,2.66e-37,72;CL:0000557,6.44e-37,67;CL:0000763,4.24e-23,108;CL:0000049,4.24e-23,108;CL:0002087,2.27e-19,115;CL:0002031,2.41e-18,120;CL:0000738,3.21e-17,136;CL:0002032,1.07e-13,161;CL:0000837,1.07e-13,161;CL:0000037,6.75e-13,168;CL:0000988,5.79e-12,177;CL:0000134,1.63e-07,354;CL:0002320,3.06e-07,361;CL:0000048,4.90e-07,427;CL:0000219,6.22e-07,386;CL:0000723,7.73e-07,433 | |||
|ontology_enrichment_development_v019=CL:0002057;1.33e-28;42!CL:0000049;1.53e-09;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001474!2.27e-13!86;UBERON:0002371!2.44e-13!80;UBERON:0004765!4.23e-12!101;UBERON:0001434!4.23e-12!101;UBERON:0002193!2.48e-10!112;UBERON:0002405!4.40e-10!115;UBERON:0002390!1.26e-09!102;UBERON:0003061!1.26e-09!102;UBERON:0002204!1.95e-09!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,5.86e-32,76;UBERON:0001474,2.99e-29,82;UBERON:0004765,3.39e-26,90;UBERON:0002390,5.84e-26,98;UBERON:0003061,5.84e-26,98;UBERON:0002405,3.48e-25,93;UBERON:0001434,4.65e-23,100;UBERON:0002193,4.67e-23,108;UBERON:0002204,1.10e-15,167;UBERON:0003081,1.80e-15,203;UBERON:0000926,2.60e-09,315;UBERON:0004120,2.60e-09,315;UBERON:0006603,2.60e-09,315;UBERON:0002384,7.26e-07,371 | |||
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| |||
|short_description=p1@uc002tel.2 | |||
}} |
Revision as of 12:54, 12 September 2013
Short description: | p1@uc002tel.2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_uc002tel.2_5end |
Coexpression cluster: | C469_Neutrophils_Monocytederived_CD14_CD19_Eosinophils_blood_Macrophage |
Association with transcript: | -72bp_to_uc002tel.2_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.74e-45 | 48 |
phagocyte | 1.74e-45 | 48 |
classical monocyte | 5.41e-43 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.41e-43 | 42 |
monopoietic cell | 1.42e-42 | 59 |
monocyte | 1.42e-42 | 59 |
monoblast | 1.42e-42 | 59 |
promonocyte | 1.42e-42 | 59 |
macrophage dendritic cell progenitor | 5.06e-41 | 61 |
myeloid lineage restricted progenitor cell | 1.50e-37 | 66 |
myeloid leukocyte | 2.66e-37 | 72 |
granulocyte monocyte progenitor cell | 6.44e-37 | 67 |
myeloid cell | 4.24e-23 | 108 |
common myeloid progenitor | 4.24e-23 | 108 |
nongranular leukocyte | 2.27e-19 | 115 |
hematopoietic lineage restricted progenitor cell | 2.41e-18 | 120 |
leukocyte | 3.21e-17 | 136 |
hematopoietic oligopotent progenitor cell | 1.07e-13 | 161 |
hematopoietic multipotent progenitor cell | 1.07e-13 | 161 |
hematopoietic stem cell | 6.75e-13 | 168 |
hematopoietic cell | 5.79e-12 | 177 |
mesenchymal cell | 1.63e-07 | 354 |
connective tissue cell | 3.06e-07 | 361 |
multi fate stem cell | 4.90e-07 | 427 |
motile cell | 6.22e-07 | 386 |
somatic stem cell | 7.73e-07 | 433 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 5.86e-32 | 76 |
bone element | 2.99e-29 | 82 |
skeletal element | 3.39e-26 | 90 |
hematopoietic system | 5.84e-26 | 98 |
blood island | 5.84e-26 | 98 |
immune system | 3.48e-25 | 93 |
skeletal system | 4.65e-23 | 100 |
hemolymphoid system | 4.67e-23 | 108 |
musculoskeletal system | 1.10e-15 | 167 |
lateral plate mesoderm | 1.80e-15 | 203 |
mesoderm | 2.60e-09 | 315 |
mesoderm-derived structure | 2.60e-09 | 315 |
presumptive mesoderm | 2.60e-09 | 315 |
connective tissue | 7.26e-07 | 371 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.