FFCP PHASE1:Hg19::chr22:47016102..47016117,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=23151|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=29113|TSSclassifier=S|UniProt=Q6IC98|association_with_transcript=-181bp_to_ENST00000406902_5end|coexpression_cluster_id=C462|description=CAGE_peak_2_at_GRAMD4_5end|id=chr22:47016102..47016117,+|ontology_enrichment_celltype=CL:0002009!1.54e-45!65;CL:0000557!1.48e-43!71;CL:0002194!1.59e-43!63;CL:0000576!1.59e-43!63;CL:0000040!1.59e-43!63;CL:0000559!1.59e-43!63;CL:0000766!1.12e-42!76;CL:0000763!6.49e-42!112;CL:0000049!6.49e-42!112;CL:0000839!7.13e-39!70;CL:0002057!3.25e-36!42;CL:0000860!8.74e-33!45;CL:0000037!2.16e-28!172;CL:0000566!2.16e-28!172;CL:0002032!7.52e-26!165;CL:0000837!7.52e-26!165;CL:0000988!2.72e-25!182;CL:0000738!1.56e-24!140;CL:0002087!1.12e-22!119;CL:0002031!4.90e-21!124|ontology_enrichment_celltype_v019=CL:0000473;5.56e-49;39!CL:0000234;5.56e-49;39!CL:0000860;1.58e-42;33!CL:0002057;1.58e-42;33!CL:0000576;7.20e-39;48!CL:0000766;1.34e-27;69!CL:0000763;3.19e-20;100!CL:0000235;1.33e-18;6!CL:0002619;4.57e-10;3!CL:0000738;9.67e-09;136!CL:0000767;1.00e-08;3!CL:0002087;1.31e-07;104|ontology_enrichment_celltype_v019_2=CL:0002009,1.67e-67,61;CL:0002194,2.04e-66,59;CL:0000576,2.04e-66,59;CL:0000040,2.04e-66,59;CL:0000559,2.04e-66,59;CL:0000557,1.30e-63,67;CL:0000766,1.90e-61,72;CL:0000763,2.93e-61,108;CL:0000049,2.93e-61,108;CL:0000473,2.97e-59,48;CL:0000234,2.97e-59,48;CL:0000839,2.65e-58,66;CL:0000860,4.37e-44,42;CL:0002057,4.37e-44,42;CL:0002032,9.29e-37,161;CL:0000837,9.29e-37,161;CL:0000037,2.95e-36,168;CL:0000988,9.92e-34,177;CL:0002087,1.10e-30,115;CL:0000738,1.76e-30,136;CL:0002031,4.51e-29,120;CL:0000235,1.28e-18,6;CL:0000134,2.85e-10,354;CL:0002619,4.72e-10,3;CL:0002320,7.94e-10,361;CL:0000767,1.51e-08,3;CL:0000219,2.85e-08,386|ontology_enrichment_development_v019=CL:0002057;3.67e-32;42!CL:0000049;1.63e-19;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:8692;4.60e-09;31|ontology_enrichment_disease_v019_2=DOID:8692,2.47e-09,31;DOID:1240,6.33e-07,39|ontology_enrichment_uberon=UBERON:0002390!5.68e-48!102;UBERON:0003061!5.68e-48!102;UBERON:0002193!1.29e-42!112;UBERON:0002371!8.60e-38!80;UBERON:0001474!1.12e-33!86;UBERON:0002405!8.60e-28!115;UBERON:0004765!1.38e-26!101;UBERON:0001434!1.38e-26!101;UBERON:0007023!6.14e-23!115;UBERON:0003081!1.42e-14!216;UBERON:0002204!7.47e-10!167;UBERON:0000178!7.53e-10!15;UBERON:0000179!7.53e-10!15;UBERON:0000463!7.53e-10!15;UBERON:0001049!6.95e-07!57;UBERON:0005068!6.95e-07!57;UBERON:0006241!6.95e-07!57;UBERON:0007135!6.95e-07!57|ontology_enrichment_uberon_v019=UBERON:0000178;5.80e-13;15!UBERON:0000179;5.80e-13;15!UBERON:0000463;5.80e-13;15|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.25e-62,98;UBERON:0003061,4.25e-62,98;UBERON:0002193,3.51e-55,108;UBERON:0002371,8.14e-55,76;UBERON:0001474,5.15e-50,82;UBERON:0004765,1.34e-44,90;UBERON:0002405,8.27e-43,93;UBERON:0001434,4.81e-39,100;UBERON:0003081,8.89e-26,203;UBERON:0002204,5.42e-19,167;UBERON:0000178,5.91e-13,15;UBERON:0000179,5.91e-13,15;UBERON:0000463,5.91e-13,15;UBERON:0000926,9.04e-13,315;UBERON:0004120,9.04e-13,315;UBERON:0006603,9.04e-13,315;UBERON:0002384,3.19e-09,371|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492484232307152,0,0,0,0.136874425072884,0.125542639594803,0,0,0.0787107813136792,2.36018566109342,1.15148819429164,2.16742572642506,0,0,0,0,0,0.587200878669695,2.76997704265939,0.601633342410425,0.868043482863407,27.0937723830308,11.6601719766833,20.0908942754665,12.7950450126017,6.42389104270976,13.3421233653299,2.09186133215116,1.23350366406548,1.85823822537062,0.28769239232215,1.5369642391746,0.47296445977717,0.689491361473237,2.5819387343353,1.35426486594342,4.51781614902251,4.91231070104122,2.69668181334102,1.83650335422542,5.1348644332175,5.11469700639233,2.63881040149373,2.39356389145958,2.13112375266347,0.870627715885752,1.13477044938228,0.622822248995575,0.251248665256743,2.60741459210101,1.3031330682307,0.605399502633369,1.10483290796269,0.632924774881769,1.90129757680748,0.425208599930087,1.46761051855863,8.08766144254765,3.90459921387916,5.46466994770072,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0.150575119077773,0.255973222308837,0,0.473554504088034,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.589405839739707,0,0,0,0,0.26591592103773,0.238490624305342,0.571994910780128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.709336764396714,0,0,0,0,0,0,0,0.576175924479999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,45.7963631322559,3.7440682422278,20.6597315581332,0,0,0,0,0,0,0,0,0,0.720599767084807,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,38.919609805181,76.8453349891153,46.383466686267,0,0,0,0,0,0,0,0.197030760201927,0,0,0.254094624222463,0,0,0.670065061337395,0,0.749007023947182,0,0.414415513436035,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=23151 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29113 | |||
|TSSclassifier=S | |||
|UniProt=Q6IC98 | |||
|association_with_transcript=-181bp_to_ENST00000406902_5end | |||
|coexpression_cluster_id=C462 | |||
|description=CAGE_peak_2_at_GRAMD4_5end | |||
|id=chr22:47016102..47016117,+ | |||
|ontology_enrichment_celltype=CL:0002009!1.54e-45!65;CL:0000557!1.48e-43!71;CL:0002194!1.59e-43!63;CL:0000576!1.59e-43!63;CL:0000040!1.59e-43!63;CL:0000559!1.59e-43!63;CL:0000766!1.12e-42!76;CL:0000763!6.49e-42!112;CL:0000049!6.49e-42!112;CL:0000839!7.13e-39!70;CL:0002057!3.25e-36!42;CL:0000860!8.74e-33!45;CL:0000037!2.16e-28!172;CL:0000566!2.16e-28!172;CL:0002032!7.52e-26!165;CL:0000837!7.52e-26!165;CL:0000988!2.72e-25!182;CL:0000738!1.56e-24!140;CL:0002087!1.12e-22!119;CL:0002031!4.90e-21!124 | |||
|ontology_enrichment_celltype_v019=CL:0000473;5.56e-49;39!CL:0000234;5.56e-49;39!CL:0000860;1.58e-42;33!CL:0002057;1.58e-42;33!CL:0000576;7.20e-39;48!CL:0000766;1.34e-27;69!CL:0000763;3.19e-20;100!CL:0000235;1.33e-18;6!CL:0002619;4.57e-10;3!CL:0000738;9.67e-09;136!CL:0000767;1.00e-08;3!CL:0002087;1.31e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0002009,1.67e-67,61;CL:0002194,2.04e-66,59;CL:0000576,2.04e-66,59;CL:0000040,2.04e-66,59;CL:0000559,2.04e-66,59;CL:0000557,1.30e-63,67;CL:0000766,1.90e-61,72;CL:0000763,2.93e-61,108;CL:0000049,2.93e-61,108;CL:0000473,2.97e-59,48;CL:0000234,2.97e-59,48;CL:0000839,2.65e-58,66;CL:0000860,4.37e-44,42;CL:0002057,4.37e-44,42;CL:0002032,9.29e-37,161;CL:0000837,9.29e-37,161;CL:0000037,2.95e-36,168;CL:0000988,9.92e-34,177;CL:0002087,1.10e-30,115;CL:0000738,1.76e-30,136;CL:0002031,4.51e-29,120;CL:0000235,1.28e-18,6;CL:0000134,2.85e-10,354;CL:0002619,4.72e-10,3;CL:0002320,7.94e-10,361;CL:0000767,1.51e-08,3;CL:0000219,2.85e-08,386 | |||
|ontology_enrichment_development_v019=CL:0002057;3.67e-32;42!CL:0000049;1.63e-19;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:8692;4.60e-09;31 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,2.47e-09,31;DOID:1240,6.33e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0002390!5.68e-48!102;UBERON:0003061!5.68e-48!102;UBERON:0002193!1.29e-42!112;UBERON:0002371!8.60e-38!80;UBERON:0001474!1.12e-33!86;UBERON:0002405!8.60e-28!115;UBERON:0004765!1.38e-26!101;UBERON:0001434!1.38e-26!101;UBERON:0007023!6.14e-23!115;UBERON:0003081!1.42e-14!216;UBERON:0002204!7.47e-10!167;UBERON:0000178!7.53e-10!15;UBERON:0000179!7.53e-10!15;UBERON:0000463!7.53e-10!15;UBERON:0001049!6.95e-07!57;UBERON:0005068!6.95e-07!57;UBERON:0006241!6.95e-07!57;UBERON:0007135!6.95e-07!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.80e-13;15!UBERON:0000179;5.80e-13;15!UBERON:0000463;5.80e-13;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.25e-62,98;UBERON:0003061,4.25e-62,98;UBERON:0002193,3.51e-55,108;UBERON:0002371,8.14e-55,76;UBERON:0001474,5.15e-50,82;UBERON:0004765,1.34e-44,90;UBERON:0002405,8.27e-43,93;UBERON:0001434,4.81e-39,100;UBERON:0003081,8.89e-26,203;UBERON:0002204,5.42e-19,167;UBERON:0000178,5.91e-13,15;UBERON:0000179,5.91e-13,15;UBERON:0000463,5.91e-13,15;UBERON:0000926,9.04e-13,315;UBERON:0004120,9.04e-13,315;UBERON:0006603,9.04e-13,315;UBERON:0002384,3.19e-09,371 | |||
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|short_description=p2@GRAMD4 | |||
}} |
Revision as of 12:25, 12 September 2013
Short description: | p2@GRAMD4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_GRAMD4_5end |
Coexpression cluster: | C462_CD14_Monocytederived_Macrophage_Hepatic_Dendritic_lung_adipose |
Association with transcript: | -181bp_to_ENST00000406902_5end |
EntrezGene: | GRAMD4 |
HGNC: | 29113 |
UniProt: | Q6IC98 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage dendritic cell progenitor | 1.67e-67 | 61 |
monopoietic cell | 2.04e-66 | 59 |
monocyte | 2.04e-66 | 59 |
monoblast | 2.04e-66 | 59 |
promonocyte | 2.04e-66 | 59 |
granulocyte monocyte progenitor cell | 1.30e-63 | 67 |
myeloid leukocyte | 1.90e-61 | 72 |
myeloid cell | 2.93e-61 | 108 |
common myeloid progenitor | 2.93e-61 | 108 |
defensive cell | 2.97e-59 | 48 |
phagocyte | 2.97e-59 | 48 |
myeloid lineage restricted progenitor cell | 2.65e-58 | 66 |
classical monocyte | 4.37e-44 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.37e-44 | 42 |
hematopoietic oligopotent progenitor cell | 9.29e-37 | 161 |
hematopoietic multipotent progenitor cell | 9.29e-37 | 161 |
hematopoietic stem cell | 2.95e-36 | 168 |
hematopoietic cell | 9.92e-34 | 177 |
nongranular leukocyte | 1.10e-30 | 115 |
leukocyte | 1.76e-30 | 136 |
hematopoietic lineage restricted progenitor cell | 4.51e-29 | 120 |
macrophage | 1.28e-18 | 6 |
mesenchymal cell | 2.85e-10 | 354 |
adult endothelial progenitor cell | 4.72e-10 | 3 |
connective tissue cell | 7.94e-10 | 361 |
basophil | 1.51e-08 | 3 |
motile cell | 2.85e-08 | 386 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 4.25e-62 | 98 |
blood island | 4.25e-62 | 98 |
hemolymphoid system | 3.51e-55 | 108 |
bone marrow | 8.14e-55 | 76 |
bone element | 5.15e-50 | 82 |
skeletal element | 1.34e-44 | 90 |
immune system | 8.27e-43 | 93 |
skeletal system | 4.81e-39 | 100 |
lateral plate mesoderm | 8.89e-26 | 203 |
musculoskeletal system | 5.42e-19 | 167 |
blood | 5.91e-13 | 15 |
haemolymphatic fluid | 5.91e-13 | 15 |
organism substance | 5.91e-13 | 15 |
mesoderm | 9.04e-13 | 315 |
mesoderm-derived structure | 9.04e-13 | 315 |
presumptive mesoderm | 9.04e-13 | 315 |
connective tissue | 3.19e-09 | 371 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 2.47e-09 | 31 |
leukemia | 6.33e-07 | 39 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.