FFCP PHASE1:Hg19::chr22:45680822..45680843,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=7380|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=12580|TSSclassifier=S|UniProt=O75631|association_with_transcript=-19bp_to_ENST00000216211_5end|coexpression_cluster_id=C124|description=CAGE_peak_1_at_UPK3A_5end|id=chr22:45680822..45680843,+|ontology_enrichment_celltype=CL:0002057!2.41e-44!42;CL:0000860!2.89e-40!45;CL:0002194!4.98e-29!63;CL:0000576!4.98e-29!63;CL:0000040!4.98e-29!63;CL:0000559!4.98e-29!63;CL:0000766!4.51e-28!76;CL:0002009!1.24e-27!65;CL:0000557!2.75e-25!71;CL:0000839!1.65e-24!70;CL:0000763!2.07e-21!112;CL:0000049!2.07e-21!112;CL:0000738!1.03e-18!140;CL:0000037!1.65e-15!172;CL:0000566!1.65e-15!172;CL:0002087!2.97e-15!119;CL:0000988!1.65e-13!182;CL:0002032!1.02e-12!165;CL:0000837!1.02e-12!165;CL:0002031!9.53e-12!124;CL:0002393!1.71e-11!9;CL:0002397!1.71e-11!9|ontology_enrichment_celltype_v019=CL:0000860;5.02e-50;33!CL:0002057;5.02e-50;33!CL:0000576;6.39e-36;48!CL:0000473;6.42e-35;39!CL:0000234;6.42e-35;39!CL:0000766;3.61e-22;69!CL:0000763;1.46e-11;100!CL:0002393;2.15e-09;6!CL:0002397;2.15e-09;6!CL:0002087;1.62e-08;104!CL:0000875;4.76e-08;3!CL:0002396;4.76e-08;3!CL:0000784;1.11e-07;3!CL:0000738;1.14e-07;136!CL:0000451;2.31e-07;10|ontology_enrichment_celltype_v019_2=CL:0000860,2.31e-70,42;CL:0002057,2.31e-70,42;CL:0000473,4.94e-60,48;CL:0000234,4.94e-60,48;CL:0002194,2.05e-48,59;CL:0000576,2.05e-48,59;CL:0000040,2.05e-48,59;CL:0000559,2.05e-48,59;CL:0000766,9.52e-47,72;CL:0002009,1.87e-46,61;CL:0000557,1.82e-43,67;CL:0000839,4.54e-42,66;CL:0000763,2.56e-37,108;CL:0000049,2.56e-37,108;CL:0000738,1.19e-29,136;CL:0000037,1.11e-24,168;CL:0002087,4.44e-23,115;CL:0000988,1.15e-22,177;CL:0002032,1.33e-21,161;CL:0000837,1.33e-21,161;CL:0002031,2.84e-19,120;CL:0002393,1.31e-15,9;CL:0002397,1.31e-15,9;CL:0000875,4.94e-08,3;CL:0002396,4.94e-08,3;CL:0000784,1.12e-07,3;CL:0000451,2.32e-07,10|ontology_enrichment_development_v019=CL:0002057;2.69e-49;42!CL:0000049;2.63e-11;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!8.70e-28!102;UBERON:0003061!8.70e-28!102;UBERON:0002193!1.54e-25!112;UBERON:0002371!5.53e-23!80;UBERON:0001474!3.15e-20!86;UBERON:0007023!9.77e-18!115;UBERON:0002405!1.39e-17!115;UBERON:0004765!1.33e-15!101;UBERON:0001434!1.33e-15!101;UBERON:0003081!1.09e-07!216;UBERON:0000922!3.65e-07!612|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.83e-39,98;UBERON:0003061,2.83e-39,98;UBERON:0002371,4.20e-39,76;UBERON:0001474,2.31e-35,82;UBERON:0002193,2.30e-34,108;UBERON:0002405,2.54e-31,93;UBERON:0004765,3.75e-31,90;UBERON:0001434,7.61e-27,100;UBERON:0003081,2.47e-17,203;UBERON:0002204,3.60e-16,167;UBERON:0000926,4.49e-11,315;UBERON:0004120,4.49e-11,315;UBERON:0006603,4.49e-11,315|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.36018566109342,0.383829398097213,2.32224184974114,0,0,0,0,0,0.293600439334847,3.32397245119126,3.60980005446255,0.868043482863407,0.447830948479849,0.32389366601898,0,1.30858414901608,2.64513160582167,1.94067248950253,1.85943229524548,2.46700732813095,2.47765096716083,2.58923153089935,1.2808035326455,1.89185783910868,1.37898272294647,1.93645405075148,1.35426486594342,2.07066573496865,1.91034305040492,1.12361742222542,2.14258724659632,0.962787081228281,4.47535988059329,4.28806690242731,2.59302754908121,3.83602275479425,3.48251086354301,1.13477044938228,1.24564449799115,2.76373531782418,2.08593167368081,4.99534342821768,1.81619850790011,1.47311054395026,3.16462387440884,4.22510572623884,2.97646019951061,5.2414661377094,3.81917345898083,4.05477610672067,2.73233497385036,5.98526761856622,6.16641699317179,11.1425133796427,0,0,0,0,0,0,0,0,0.569212969109448,0,0.382273228125229,0,0,0.526768169550154,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637130828648193,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.0654895377488563,0,0,0,0.174129737299267,0,4.76981248610684,5.14795419702115,3.34311751196608,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0,0.464775771478074,0.829288440122964,0.756962552626885,0.72995471815166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.788123040807709,0,0,0,0,0,0,0,6.74106321552464,0,0,0,0,0.271265023699736,0,0,0,0,0,0,0,0,0,0,0,0,0.82707210449155,1.07857100409308,2.02782359826544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.644566922551274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.512900250232778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,4.43430153536676,0.459446800413919,1.01489521846434,0.764637207142375,1.1392943743483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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=7380 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12580 | |||
|TSSclassifier=S | |||
|UniProt=O75631 | |||
|association_with_transcript=-19bp_to_ENST00000216211_5end | |||
|coexpression_cluster_id=C124 | |||
|description=CAGE_peak_1_at_UPK3A_5end | |||
|id=chr22:45680822..45680843,+ | |||
|ontology_enrichment_celltype=CL:0002057!2.41e-44!42;CL:0000860!2.89e-40!45;CL:0002194!4.98e-29!63;CL:0000576!4.98e-29!63;CL:0000040!4.98e-29!63;CL:0000559!4.98e-29!63;CL:0000766!4.51e-28!76;CL:0002009!1.24e-27!65;CL:0000557!2.75e-25!71;CL:0000839!1.65e-24!70;CL:0000763!2.07e-21!112;CL:0000049!2.07e-21!112;CL:0000738!1.03e-18!140;CL:0000037!1.65e-15!172;CL:0000566!1.65e-15!172;CL:0002087!2.97e-15!119;CL:0000988!1.65e-13!182;CL:0002032!1.02e-12!165;CL:0000837!1.02e-12!165;CL:0002031!9.53e-12!124;CL:0002393!1.71e-11!9;CL:0002397!1.71e-11!9 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.02e-50;33!CL:0002057;5.02e-50;33!CL:0000576;6.39e-36;48!CL:0000473;6.42e-35;39!CL:0000234;6.42e-35;39!CL:0000766;3.61e-22;69!CL:0000763;1.46e-11;100!CL:0002393;2.15e-09;6!CL:0002397;2.15e-09;6!CL:0002087;1.62e-08;104!CL:0000875;4.76e-08;3!CL:0002396;4.76e-08;3!CL:0000784;1.11e-07;3!CL:0000738;1.14e-07;136!CL:0000451;2.31e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.31e-70,42;CL:0002057,2.31e-70,42;CL:0000473,4.94e-60,48;CL:0000234,4.94e-60,48;CL:0002194,2.05e-48,59;CL:0000576,2.05e-48,59;CL:0000040,2.05e-48,59;CL:0000559,2.05e-48,59;CL:0000766,9.52e-47,72;CL:0002009,1.87e-46,61;CL:0000557,1.82e-43,67;CL:0000839,4.54e-42,66;CL:0000763,2.56e-37,108;CL:0000049,2.56e-37,108;CL:0000738,1.19e-29,136;CL:0000037,1.11e-24,168;CL:0002087,4.44e-23,115;CL:0000988,1.15e-22,177;CL:0002032,1.33e-21,161;CL:0000837,1.33e-21,161;CL:0002031,2.84e-19,120;CL:0002393,1.31e-15,9;CL:0002397,1.31e-15,9;CL:0000875,4.94e-08,3;CL:0002396,4.94e-08,3;CL:0000784,1.12e-07,3;CL:0000451,2.32e-07,10 | |||
|ontology_enrichment_development_v019=CL:0002057;2.69e-49;42!CL:0000049;2.63e-11;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!8.70e-28!102;UBERON:0003061!8.70e-28!102;UBERON:0002193!1.54e-25!112;UBERON:0002371!5.53e-23!80;UBERON:0001474!3.15e-20!86;UBERON:0007023!9.77e-18!115;UBERON:0002405!1.39e-17!115;UBERON:0004765!1.33e-15!101;UBERON:0001434!1.33e-15!101;UBERON:0003081!1.09e-07!216;UBERON:0000922!3.65e-07!612 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.83e-39,98;UBERON:0003061,2.83e-39,98;UBERON:0002371,4.20e-39,76;UBERON:0001474,2.31e-35,82;UBERON:0002193,2.30e-34,108;UBERON:0002405,2.54e-31,93;UBERON:0004765,3.75e-31,90;UBERON:0001434,7.61e-27,100;UBERON:0003081,2.47e-17,203;UBERON:0002204,3.60e-16,167;UBERON:0000926,4.49e-11,315;UBERON:0004120,4.49e-11,315;UBERON:0006603,4.49e-11,315 | |||
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|short_description=p1@UPK3A | |||
}} |
Revision as of 12:21, 12 September 2013
Short description: | p1@UPK3A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_UPK3A_5end |
Coexpression cluster: | C124_small_temporal_duodenum_colon_gall_signet_Hepatocyte |
Association with transcript: | -19bp_to_ENST00000216211_5end |
EntrezGene: | UPK3A |
HGNC: | 12580 |
UniProt: | O75631 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.31e-70 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.31e-70 | 42 |
defensive cell | 4.94e-60 | 48 |
phagocyte | 4.94e-60 | 48 |
monopoietic cell | 2.05e-48 | 59 |
monocyte | 2.05e-48 | 59 |
monoblast | 2.05e-48 | 59 |
promonocyte | 2.05e-48 | 59 |
myeloid leukocyte | 9.52e-47 | 72 |
macrophage dendritic cell progenitor | 1.87e-46 | 61 |
granulocyte monocyte progenitor cell | 1.82e-43 | 67 |
myeloid lineage restricted progenitor cell | 4.54e-42 | 66 |
myeloid cell | 2.56e-37 | 108 |
common myeloid progenitor | 2.56e-37 | 108 |
leukocyte | 1.19e-29 | 136 |
hematopoietic stem cell | 1.11e-24 | 168 |
nongranular leukocyte | 4.44e-23 | 115 |
hematopoietic cell | 1.15e-22 | 177 |
hematopoietic oligopotent progenitor cell | 1.33e-21 | 161 |
hematopoietic multipotent progenitor cell | 1.33e-21 | 161 |
hematopoietic lineage restricted progenitor cell | 2.84e-19 | 120 |
intermediate monocyte | 1.31e-15 | 9 |
CD14-positive, CD16-positive monocyte | 1.31e-15 | 9 |
non-classical monocyte | 4.94e-08 | 3 |
CD14-low, CD16-positive monocyte | 4.94e-08 | 3 |
plasmacytoid dendritic cell | 1.12e-07 | 3 |
dendritic cell | 2.32e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.83e-39 | 98 |
blood island | 2.83e-39 | 98 |
bone marrow | 4.20e-39 | 76 |
bone element | 2.31e-35 | 82 |
hemolymphoid system | 2.30e-34 | 108 |
immune system | 2.54e-31 | 93 |
skeletal element | 3.75e-31 | 90 |
skeletal system | 7.61e-27 | 100 |
lateral plate mesoderm | 2.47e-17 | 203 |
musculoskeletal system | 3.60e-16 | 167 |
mesoderm | 4.49e-11 | 315 |
mesoderm-derived structure | 4.49e-11 | 315 |
presumptive mesoderm | 4.49e-11 | 315 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.