FFCP PHASE1:Hg19::chr22:38005213..38005234,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=26088|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=17842|TSSclassifier=W|UniProt=|association_with_transcript=140bp_to_ENST00000484804_5end|coexpression_cluster_id=C2|description=CAGE_peak_4_at_GGA1_5end|id=chr22:38005213..38005234,+|ontology_enrichment_celltype=CL:0000988!2.21e-38!182;CL:0000738!3.57e-38!140;CL:0000037!9.18e-37!172;CL:0000566!9.18e-37!172;CL:0002032!4.90e-36!165;CL:0000837!4.90e-36!165;CL:0000766!2.30e-33!76;CL:0000763!4.97e-33!112;CL:0000049!4.97e-33!112;CL:0000557!2.06e-29!71;CL:0002031!4.28e-29!124;CL:0002087!7.52e-29!119;CL:0002057!6.68e-28!42;CL:0002009!1.47e-27!65;CL:0000839!3.64e-27!70;CL:0000860!2.48e-26!45;CL:0002194!3.75e-26!63;CL:0000576!3.75e-26!63;CL:0000040!3.75e-26!63;CL:0000559!3.75e-26!63;CL:0000134!9.08e-17!358;CL:0002320!3.79e-16!365;CL:0000034!1.14e-14!444;CL:0000048!1.97e-14!430;CL:0000723!3.72e-14!436;CL:0000219!1.63e-13!390;CL:0002371!2.22e-09!591;CL:0000063!2.29e-08!578;CL:0000144!7.80e-08!625;CL:0002393!9.92e-08!9;CL:0002397!9.92e-08!9;CL:0000012!5.98e-07!682|ontology_enrichment_celltype_v019=CL:0000860;6.96e-49;33!CL:0002057;6.96e-49;33!CL:0000473;1.18e-43;39!CL:0000234;1.18e-43;39!CL:0000576;1.19e-35;48!CL:0000766;1.13e-33;69!CL:0000763;7.54e-18;100!CL:0002087;1.61e-17;104!CL:0000738;2.20e-16;136!CL:0002393;8.81e-16;6!CL:0002397;8.81e-16;6!CL:0000094;2.32e-15;8!CL:0000081;4.36e-14;11!CL:0000988;2.17e-11;177!CL:0000775;6.54e-09;3!CL:0000226;6.51e-08;3!CL:0000842;6.51e-08;3!CL:0000453;2.14e-07;5!CL:0000219;2.20e-07;193!CL:0000945;2.27e-07;24|ontology_enrichment_celltype_v019_2=CL:0000766,2.88e-71,72;CL:0000473,1.53e-70,48;CL:0000234,1.53e-70,48;CL:0000738,6.19e-70,136;CL:0000860,9.51e-66,42;CL:0002057,9.51e-66,42;CL:0000988,1.18e-62,177;CL:0000037,1.49e-60,168;CL:0000557,2.92e-60,67;CL:0000763,5.63e-60,108;CL:0000049,5.63e-60,108;CL:0002009,5.94e-58,61;CL:0002032,1.21e-57,161;CL:0000837,1.21e-57,161;CL:0000839,2.65e-55,66;CL:0002194,5.32e-54,59;CL:0000576,5.32e-54,59;CL:0000040,5.32e-54,59;CL:0000559,5.32e-54,59;CL:0002031,1.92e-51,120;CL:0002087,4.56e-50,115;CL:0000134,1.01e-21,354;CL:0002320,6.08e-21,361;CL:0000219,3.40e-18,386;CL:0000034,6.93e-16,441;CL:0000048,1.47e-15,427;CL:0000094,1.65e-15,8;CL:0000723,4.37e-15,433;CL:0000081,3.25e-14,11;CL:0002393,2.11e-13,9;CL:0002397,2.11e-13,9;CL:0000775,6.57e-09,3;CL:0000226,5.54e-08,3;CL:0000842,5.54e-08,3;CL:0000453,1.19e-07,5;CL:0000945,2.46e-07,24;CL:0000826,2.46e-07,24|ontology_enrichment_development_v019=CL:0002057;1.05e-45;42!CL:0000049;5.89e-16;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!1.38e-26!80;UBERON:0001474!8.95e-26!86;UBERON:0002390!1.95e-25!102;UBERON:0003061!1.95e-25!102;UBERON:0002193!2.21e-22!112;UBERON:0004765!1.97e-21!101;UBERON:0001434!1.97e-21!101;UBERON:0002405!5.05e-18!115;UBERON:0002384!4.90e-16!375;UBERON:0002204!3.26e-13!167;UBERON:0003081!7.89e-12!216|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002390,6.48e-55,98;UBERON:0003061,6.48e-55,98;UBERON:0002371,4.61e-54,76;UBERON:0001474,3.53e-49,82;UBERON:0002193,1.71e-48,108;UBERON:0002405,4.71e-44,93;UBERON:0004765,1.13e-43,90;UBERON:0001434,4.99e-38,100;UBERON:0003081,3.53e-23,203;UBERON:0002384,1.05e-20,371;UBERON:0002204,9.56e-19,167;UBERON:0000926,1.79e-10,315;UBERON:0004120,1.79e-10,315;UBERON:0006603,1.79e-10,315|phase1_expression=0,0,0.140954404095971,0,0.446961094427288,0,0,0,0.261185628199839,0,0,0,0,0,0.331397375727916,1.34465029290355,0,0,0,0,0,0,0,0,0.125542639594803,2.59805579543034,2.13461532569859,1.33808328233255,1.96682138424452,0,4.4896675761662,0,0.6024118375565,0,0.154934401160603,0.284338464974843,0,9.41792194504192,26.0707781711184,25.8242936151864,0,0.32389366601898,0.257575567634187,1.16318591023652,2.26725566213286,4.12392904019288,3.25400651667958,4.52284676824008,5.26500830521676,1.43846196161075,0.768482119587302,2.12834006899727,5.17118521104928,12.2642089880927,12.1883837934908,1.69418105588344,2.18324920046277,1.34834090667051,7.95818120164347,6.09765151444578,23.6554736545645,0,0.398927315243264,0.852449501065388,3.77272010217159,4.53908179752912,4.9825779919646,1.00499466102697,1.5644487552606,2.82345498116652,3.02699751316684,2.94622108790052,2.84816148696796,5.28138215779854,9.56719349842696,5.66078342872615,1.23561494261145,1.35159203557356,2.57160938715328,0.855038231223746,1.59133341759272,0.547992461293902,0,0,0,0,0,0.574752439954483,0,0,3.41527781465669,2.34894875748376,1.52909291250092,1.32171328579026,1.12101712596307,0,0,0.393010762749165,0.205601498999509,0,0,0,0,0.222820913770347,0,0,0,0.384273959177026,0.130059347559878,0,0,0.289803085735052,0,0,0,0.113309342697566,0,0,0,0.318565414324097,0,0,0,0,0,0,0,0.403213486449465,0.802320587350522,0.289648807765598,0,0,0,0,0,0,0,0.486634870302636,0,0,0.175669571386252,0.589405839739707,0,0,0,0,0.797747763113191,0.238490624305342,0,0,0.198762407366705,0,0,0.5653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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=26088 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17842 | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=140bp_to_ENST00000484804_5end | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_4_at_GGA1_5end | |||
|id=chr22:38005213..38005234,+ | |||
|ontology_enrichment_celltype=CL:0000988!2.21e-38!182;CL:0000738!3.57e-38!140;CL:0000037!9.18e-37!172;CL:0000566!9.18e-37!172;CL:0002032!4.90e-36!165;CL:0000837!4.90e-36!165;CL:0000766!2.30e-33!76;CL:0000763!4.97e-33!112;CL:0000049!4.97e-33!112;CL:0000557!2.06e-29!71;CL:0002031!4.28e-29!124;CL:0002087!7.52e-29!119;CL:0002057!6.68e-28!42;CL:0002009!1.47e-27!65;CL:0000839!3.64e-27!70;CL:0000860!2.48e-26!45;CL:0002194!3.75e-26!63;CL:0000576!3.75e-26!63;CL:0000040!3.75e-26!63;CL:0000559!3.75e-26!63;CL:0000134!9.08e-17!358;CL:0002320!3.79e-16!365;CL:0000034!1.14e-14!444;CL:0000048!1.97e-14!430;CL:0000723!3.72e-14!436;CL:0000219!1.63e-13!390;CL:0002371!2.22e-09!591;CL:0000063!2.29e-08!578;CL:0000144!7.80e-08!625;CL:0002393!9.92e-08!9;CL:0002397!9.92e-08!9;CL:0000012!5.98e-07!682 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.96e-49;33!CL:0002057;6.96e-49;33!CL:0000473;1.18e-43;39!CL:0000234;1.18e-43;39!CL:0000576;1.19e-35;48!CL:0000766;1.13e-33;69!CL:0000763;7.54e-18;100!CL:0002087;1.61e-17;104!CL:0000738;2.20e-16;136!CL:0002393;8.81e-16;6!CL:0002397;8.81e-16;6!CL:0000094;2.32e-15;8!CL:0000081;4.36e-14;11!CL:0000988;2.17e-11;177!CL:0000775;6.54e-09;3!CL:0000226;6.51e-08;3!CL:0000842;6.51e-08;3!CL:0000453;2.14e-07;5!CL:0000219;2.20e-07;193!CL:0000945;2.27e-07;24 | |||
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|ontology_enrichment_development_v019=CL:0002057;1.05e-45;42!CL:0000049;5.89e-16;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.38e-26!80;UBERON:0001474!8.95e-26!86;UBERON:0002390!1.95e-25!102;UBERON:0003061!1.95e-25!102;UBERON:0002193!2.21e-22!112;UBERON:0004765!1.97e-21!101;UBERON:0001434!1.97e-21!101;UBERON:0002405!5.05e-18!115;UBERON:0002384!4.90e-16!375;UBERON:0002204!3.26e-13!167;UBERON:0003081!7.89e-12!216 | |||
|ontology_enrichment_uberon_v019= | |||
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| |||
|short_description=p4@GGA1 | |||
}} |
Revision as of 11:53, 12 September 2013
Short description: | p4@GGA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_GGA1_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 140bp_to_ENST00000484804_5end |
EntrezGene: | GGA1 |
HGNC: | 17842 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 6.48e-55 | 98 |
blood island | 6.48e-55 | 98 |
bone marrow | 4.61e-54 | 76 |
bone element | 3.53e-49 | 82 |
hemolymphoid system | 1.71e-48 | 108 |
immune system | 4.71e-44 | 93 |
skeletal element | 1.13e-43 | 90 |
skeletal system | 4.99e-38 | 100 |
lateral plate mesoderm | 3.53e-23 | 203 |
connective tissue | 1.05e-20 | 371 |
musculoskeletal system | 9.56e-19 | 167 |
mesoderm | 1.79e-10 | 315 |
mesoderm-derived structure | 1.79e-10 | 315 |
presumptive mesoderm | 1.79e-10 | 315 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.