FFCP PHASE1:Hg19::chr22:38004723..38004752,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=26088|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=17842|TSSclassifier=S|UniProt=Q6IC75|association_with_transcript=0bp_to_ENST00000381756_5end|coexpression_cluster_id=C2|description=CAGE_peak_5_at_GGA1_5end|id=chr22:38004723..38004752,+|ontology_enrichment_celltype=CL:0002057!7.12e-31!42;CL:0000766!1.28e-30!76;CL:0000860!9.93e-28!45;CL:0000557!3.70e-25!71;CL:0002009!6.07e-25!65;CL:0000839!4.05e-24!70;CL:0002194!7.23e-24!63;CL:0000576!7.23e-24!63;CL:0000040!7.23e-24!63;CL:0000559!7.23e-24!63;CL:0000763!2.06e-23!112;CL:0000049!2.06e-23!112;CL:0000738!2.45e-20!140;CL:0000037!2.72e-16!172;CL:0000566!2.72e-16!172;CL:0002032!9.58e-16!165;CL:0000837!9.58e-16!165;CL:0000988!1.07e-15!182;CL:0002031!1.04e-14!124;CL:0002087!4.26e-14!119;CL:0000094!1.95e-07!8;CL:0002393!3.22e-07!9;CL:0002397!3.22e-07!9|ontology_enrichment_celltype_v019=CL:0000860;9.87e-75;33!CL:0002057;9.87e-75;33!CL:0000473;1.19e-58;39!CL:0000234;1.19e-58;39!CL:0000576;5.26e-54;48!CL:0000766;7.62e-44;69!CL:0000094;1.10e-21;8!CL:0000763;4.19e-20;100!CL:0000081;2.57e-15;11!CL:0002087;1.01e-14;104!CL:0002393;1.71e-14;6!CL:0002397;1.71e-14;6!CL:0000738;2.43e-12;136!CL:0000775;1.17e-09;3!CL:0000767;2.02e-08;3!CL:0000988;3.40e-08;177!CL:0000875;4.94e-08;3!CL:0002396;4.94e-08;3!CL:0000226;8.39e-08;3!CL:0000842;8.39e-08;3!CL:0000771;5.02e-07;2|ontology_enrichment_celltype_v019_2=CL:0000860,7.72e-103,42;CL:0002057,7.72e-103,42;CL:0000473,3.67e-97,48;CL:0000234,3.67e-97,48;CL:0000766,8.99e-95,72;CL:0002009,1.15e-75,61;CL:0002194,3.58e-75,59;CL:0000576,3.58e-75,59;CL:0000040,3.58e-75,59;CL:0000559,3.58e-75,59;CL:0000557,2.12e-74,67;CL:0000839,1.70e-72,66;CL:0000763,2.97e-63,108;CL:0000049,2.97e-63,108;CL:0000738,2.04e-55,136;CL:0000037,1.38e-43,168;CL:0002087,5.70e-42,115;CL:0002032,7.54e-41,161;CL:0000837,7.54e-41,161;CL:0000988,1.36e-40,177;CL:0002031,1.54e-39,120;CL:0000094,1.14e-21,8;CL:0002393,6.30e-21,9;CL:0002397,6.30e-21,9;CL:0000081,2.63e-15,11;CL:0000134,3.75e-14,354;CL:0002320,1.40e-13,361;CL:0000219,1.40e-11,386;CL:0000048,9.74e-10,427;CL:0000775,1.18e-09,3;CL:0000034,1.60e-09,441;CL:0000723,2.15e-09,433;CL:0000767,2.08e-08,3;CL:0000875,4.21e-08,3;CL:0002396,4.21e-08,3;CL:0000226,5.27e-08,3;CL:0000842,5.27e-08,3;CL:0000771,5.03e-07,2|ontology_enrichment_development_v019=CL:0002057;6.77e-73;42!CL:0000049;2.11e-18;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!4.24e-27!102;UBERON:0003061!4.24e-27!102;UBERON:0002371!1.61e-22!80;UBERON:0002193!9.17e-22!112;UBERON:0001474!1.77e-21!86;UBERON:0004765!8.40e-16!101;UBERON:0001434!8.40e-16!101;UBERON:0002405!4.77e-11!115;UBERON:0007023!6.91e-08!115;UBERON:0000178!2.56e-07!15;UBERON:0000179!2.56e-07!15;UBERON:0000463!2.56e-07!15|ontology_enrichment_uberon_v019=UBERON:0000178;4.06e-09;15!UBERON:0000179;4.06e-09;15!UBERON:0000463;4.06e-09;15|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.68e-69,98;UBERON:0003061,2.68e-69,98;UBERON:0002371,4.48e-67,76;UBERON:0002193,1.43e-61,108;UBERON:0001474,2.99e-61,82;UBERON:0004765,1.11e-54,90;UBERON:0002405,1.65e-52,93;UBERON:0001434,6.12e-48,100;UBERON:0003081,2.81e-27,203;UBERON:0002204,8.54e-25,167;UBERON:0000926,5.68e-14,315;UBERON:0004120,5.68e-14,315;UBERON:0006603,5.68e-14,315;UBERON:0002384,8.34e-13,371;UBERON:0000178,4.32e-09,15;UBERON:0000179,4.32e-09,15;UBERON:0000463,4.32e-09,15|phase1_expression=0.363356758541113,0.214100523890983,0.281908808191942,0,0,0.872338524100369,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0.246242116153576,0.204000691244253,0.313454721478088,0,0,0,0.0764134057479513,0.0821005894499457,0,3.54027849164014,2.30297638858328,3.56077083626975,0,0.30120591877825,0,0.0774672005803016,0.142169232487422,0,4.9859586767869,4.8130667392834,3.25516306073778,0.223915474239924,0.32389366601898,0.77272670290256,5.23433659606433,4.1566353805769,4.36651310138069,8.13501629169896,8.22335776043652,13.6270803193846,4.02769349251011,5.63553554364021,7.09446689665756,7.58440497620561,10.973239620925,9.47985406160392,8.47090527941721,6.27684145133045,6.51698104890745,13.1616073719488,8.02322567690234,14.7047538933779,2.96866170168044,2.99195486432448,4.26224750532694,9.86711411337186,8.5107783703671,9.9651559839292,5.7787193009051,4.17186334736161,6.5156653411535,7.26479403160043,11.4166067156145,7.59509729858123,1.26753171787165,1.91343869968539,1.04829322754188,1.68492946719743,1.50176892841506,1.28580469357664,2.56511469367124,2.18808344918999,1.46131323011707,0,0,0,0.426730222566507,0.400395987036012,0,0,0.954053754535364,0,1.17447437874188,0,1.32171328579026,0,0,0,0.786021525498329,0.616804496998528,0.167186495390678,0,0,1.94826728407911,0.222820913770347,0.294605907474837,0.221533894583621,0.270803863765016,0.768547918354051,0.260118695119756,0.328875809207352,0.552700035571697,0,0.14828656316206,0.267540828089713,0,0.793165398882963,0,0,0.253019692019503,0,0,0,0.301150238155546,0.5119464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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=26088 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17842 | |||
|TSSclassifier=S | |||
|UniProt=Q6IC75 | |||
|association_with_transcript=0bp_to_ENST00000381756_5end | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_5_at_GGA1_5end | |||
|id=chr22:38004723..38004752,+ | |||
|ontology_enrichment_celltype=CL:0002057!7.12e-31!42;CL:0000766!1.28e-30!76;CL:0000860!9.93e-28!45;CL:0000557!3.70e-25!71;CL:0002009!6.07e-25!65;CL:0000839!4.05e-24!70;CL:0002194!7.23e-24!63;CL:0000576!7.23e-24!63;CL:0000040!7.23e-24!63;CL:0000559!7.23e-24!63;CL:0000763!2.06e-23!112;CL:0000049!2.06e-23!112;CL:0000738!2.45e-20!140;CL:0000037!2.72e-16!172;CL:0000566!2.72e-16!172;CL:0002032!9.58e-16!165;CL:0000837!9.58e-16!165;CL:0000988!1.07e-15!182;CL:0002031!1.04e-14!124;CL:0002087!4.26e-14!119;CL:0000094!1.95e-07!8;CL:0002393!3.22e-07!9;CL:0002397!3.22e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000860;9.87e-75;33!CL:0002057;9.87e-75;33!CL:0000473;1.19e-58;39!CL:0000234;1.19e-58;39!CL:0000576;5.26e-54;48!CL:0000766;7.62e-44;69!CL:0000094;1.10e-21;8!CL:0000763;4.19e-20;100!CL:0000081;2.57e-15;11!CL:0002087;1.01e-14;104!CL:0002393;1.71e-14;6!CL:0002397;1.71e-14;6!CL:0000738;2.43e-12;136!CL:0000775;1.17e-09;3!CL:0000767;2.02e-08;3!CL:0000988;3.40e-08;177!CL:0000875;4.94e-08;3!CL:0002396;4.94e-08;3!CL:0000226;8.39e-08;3!CL:0000842;8.39e-08;3!CL:0000771;5.02e-07;2 | |||
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|ontology_enrichment_development_v019=CL:0002057;6.77e-73;42!CL:0000049;2.11e-18;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!4.24e-27!102;UBERON:0003061!4.24e-27!102;UBERON:0002371!1.61e-22!80;UBERON:0002193!9.17e-22!112;UBERON:0001474!1.77e-21!86;UBERON:0004765!8.40e-16!101;UBERON:0001434!8.40e-16!101;UBERON:0002405!4.77e-11!115;UBERON:0007023!6.91e-08!115;UBERON:0000178!2.56e-07!15;UBERON:0000179!2.56e-07!15;UBERON:0000463!2.56e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.06e-09;15!UBERON:0000179;4.06e-09;15!UBERON:0000463;4.06e-09;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.68e-69,98;UBERON:0003061,2.68e-69,98;UBERON:0002371,4.48e-67,76;UBERON:0002193,1.43e-61,108;UBERON:0001474,2.99e-61,82;UBERON:0004765,1.11e-54,90;UBERON:0002405,1.65e-52,93;UBERON:0001434,6.12e-48,100;UBERON:0003081,2.81e-27,203;UBERON:0002204,8.54e-25,167;UBERON:0000926,5.68e-14,315;UBERON:0004120,5.68e-14,315;UBERON:0006603,5.68e-14,315;UBERON:0002384,8.34e-13,371;UBERON:0000178,4.32e-09,15;UBERON:0000179,4.32e-09,15;UBERON:0000463,4.32e-09,15 | |||
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| |||
|short_description=p5@GGA1 | |||
}} |
Revision as of 11:53, 12 September 2013
Short description: | p5@GGA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_GGA1_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 0bp_to_ENST00000381756_5end |
EntrezGene: | GGA1 |
HGNC: | 17842 |
UniProt: | Q6IC75 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.68e-69 | 98 |
blood island | 2.68e-69 | 98 |
bone marrow | 4.48e-67 | 76 |
hemolymphoid system | 1.43e-61 | 108 |
bone element | 2.99e-61 | 82 |
skeletal element | 1.11e-54 | 90 |
immune system | 1.65e-52 | 93 |
skeletal system | 6.12e-48 | 100 |
lateral plate mesoderm | 2.81e-27 | 203 |
musculoskeletal system | 8.54e-25 | 167 |
mesoderm | 5.68e-14 | 315 |
mesoderm-derived structure | 5.68e-14 | 315 |
presumptive mesoderm | 5.68e-14 | 315 |
connective tissue | 8.34e-13 | 371 |
blood | 4.32e-09 | 15 |
haemolymphatic fluid | 4.32e-09 | 15 |
organism substance | 4.32e-09 | 15 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.